{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,11,2]],"date-time":"2026-11-02T00:13:59Z","timestamp":1793578439438,"version":"4.5.0"},"reference-count":37,"publisher":"American Medical Association (AMA)","issue":"8","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["JAMA Netw Open"],"abstract":"<jats:sec id=\"ab-zoi230900-4\"><jats:title>Importance<\/jats:title><jats:p>Despite the large health burden, reliable data on sepsis epidemiology are lacking; studies using <jats:italic>International Statistical Classification of Diseases and Related Health Problems (ICD)<\/jats:italic>\u2013coded hospital discharge diagnosis for sepsis identification suffer from limited sensitivity. Also, <jats:italic>ICD<\/jats:italic> data do not allow investigation of underlying pathogens and antimicrobial resistance.<\/jats:p><\/jats:sec><jats:sec id=\"ab-zoi230900-5\"><jats:title>Objectives<\/jats:title><jats:p>To generate reliable epidemiological estimates by linking data from a population-based database to a reference standard of clinical medical record review.<\/jats:p><\/jats:sec><jats:sec id=\"ab-zoi230900-6\"><jats:title>Design, Setting, and Participants<\/jats:title><jats:p>This was a retrospective, observational cohort study using a population-based administrative database including all acute care hospitals of the Scania region in Sweden in 2019 and 2020 to identify hospital-treated sepsis cases by <jats:italic>ICD<\/jats:italic> codes. From this database, clinical medical records were also selected for review within 6 strata defined by <jats:italic>ICD<\/jats:italic> discharge diagnosis (both with and without sepsis diagnosis). Data were analyzed from April to October 2022.<\/jats:p><\/jats:sec><jats:sec id=\"ab-zoi230900-7\"><jats:title>Main outcomes and measures<\/jats:title><jats:p>Hospital and population incidences of sepsis, case fatality, antimicrobial resistance, and temporal dynamics due to COVID-19 were assessed, as well as validity of <jats:italic>ICD-10<\/jats:italic> case identification methods compared with the reference standard of clinical medical record review.<\/jats:p><\/jats:sec><jats:sec id=\"ab-zoi230900-8\"><jats:title>Results<\/jats:title><jats:p>Out of 295\u202f531 hospitalizations in 2019 in the Scania region of Sweden, 997 patient medical records were reviewed, among which 457 had sepsis according to clinical criteria. Of the patients with clinical sepsis, 232 (51%) were female, and 357 (78%) had at least 1 comorbidity. The median (IQR) age of the cohort was 76 (67-85) years. The incidence of sepsis in hospitalized patients according to the Third International Consensus Definitions for Sepsis and Septic Shock (Sepsis-3) criteria in 2019 was 4.1% (95% CI, 3.6-4.5) by medical record review. This corresponds to an annual incidence rate of 747 (95% CI, 663-832) patients with sepsis per 100\u202f000 population. No significant increase in sepsis during the COVID-19 pandemic nor a decrease in sepsis incidence when excluding COVID-19 sepsis was observed. Few sepsis cases caused by pathogens with antimicrobial resistance were found. The validity of <jats:italic>ICD-10<\/jats:italic>\u2013based case identification in administrative data was low.<\/jats:p><\/jats:sec><jats:sec id=\"ab-zoi230900-9\"><jats:title>Conclusions and Relevance<\/jats:title><jats:p>In this cohort study of sepsis epidemiology, sepsis was a considerable burden to public health in Sweden. Supplying administrative data with information from clinical medical records can help to generate reliable data on sepsis epidemiology.<\/jats:p><\/jats:sec>","DOI":"10.1001\/jamanetworkopen.2023.31168","type":"journal-article","created":{"date-parts":[[2023,8,29]],"date-time":"2023-08-29T15:32:40Z","timestamp":1693323160000},"page":"e2331168","source":"Crossref","is-referenced-by-count":65,"title":["Estimating Sepsis Incidence Using Administrative Data and Clinical Medical Record Review"],"prefix":"10.1001","volume":"6","author":[{"given":"Lisa","family":"Mellhammar","sequence":"first","affiliation":[{"name":"Department of Clinical Sciences, Division of Infection Medicine, Lund University, Lund, Sweden"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Erik","family":"Wollter","sequence":"additional","affiliation":[{"name":"Department of Clinical Sciences, Division of Infection Medicine, Lund University, Lund, Sweden"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jacob","family":"Dahlberg","sequence":"additional","affiliation":[{"name":"Department of Clinical Sciences, Division of Infection Medicine, Lund University, Lund, Sweden"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Benjamin","family":"Donovan","sequence":"additional","affiliation":[{"name":"Department of Clinical Sciences, Division of Infection Medicine, Lund University, Lund, Sweden"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Carl-Johan","family":"Ols\u00e9en","sequence":"additional","affiliation":[{"name":"Department of Clinical Sciences, Division of Infection Medicine, Lund University, Lund, Sweden"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Per Ola","family":"Wiking","sequence":"additional","affiliation":[{"name":"Department of Clinical Sciences, Division of Infection Medicine, Lund University, Lund, Sweden"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Norman","family":"Rose","sequence":"additional","affiliation":[{"name":"Institute of Infectious Diseases and Infection Control, Jena University Hospital, Jena, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Daniel","family":"Schwarzkopf","sequence":"additional","affiliation":[{"name":"Institute of Infectious Diseases and Infection Control, Jena University Hospital, Jena, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marcus","family":"Friedrich","sequence":"additional","affiliation":[{"name":"Berlin Institute of Health, Campus Virchow-Klinikum, Berlin, Germany"},{"name":"Stiftung Charit\u00e9, Berlin, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Carolin","family":"Fleischmann-Struzek","sequence":"additional","affiliation":[{"name":"Institute of Infectious Diseases and Infection Control, Jena University Hospital, Jena, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Konrad","family":"Reinhart","sequence":"additional","affiliation":[{"name":"Institute of Infectious Diseases and Infection Control, Jena University Hospital, Jena, Germany"},{"name":"Berlin Institute of Health, Campus Virchow-Klinikum, Berlin, Germany"},{"name":"Department of Anesthesiology and Operative Intensive Care Medicine (CCM, CVK), Charit\u00e9 Universit\u00e4tsmedizin Berlin, Corporate Member of Freie Universit\u00e4t Berlin, Humboldt-Universit\u00e4t zu Berlin, Berlin, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Adam","family":"Linder","sequence":"additional","affiliation":[{"name":"Department of Clinical Sciences, Division of Infection Medicine, Lund University, Lund, Sweden"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"10","published-online":{"date-parts":[[2023,8,29]]},"reference":[{"issue":"5","key":"zoi230900r1","doi-asserted-by":"publisher","first-page":"1167","DOI":"10.1097\/CCM.0b013e31827c09f8","article-title":"Benchmarking the incidence and mortality of severe sepsis in the United States.","volume":"41","author":"Gaieski","year":"2013","journal-title":"Crit Care Med"},{"issue":"1","key":"zoi230900r2","doi-asserted-by":"publisher","first-page":"88","DOI":"10.1093\/cid\/ciu750","article-title":"Comparison of trends in sepsis incidence and coding using administrative claims versus objective clinical data.","volume":"60","author":"Rhee","year":"2015","journal-title":"Clin Infect Dis"},{"issue":"8","key":"zoi230900r3","doi-asserted-by":"publisher","first-page":"1552","DOI":"10.1007\/s00134-020-06151-x","article-title":"Incidence and mortality of hospital- and ICU-treated sepsis: results from an updated and expanded systematic review and meta-analysis.","volume":"46","author":"Fleischmann-Struzek","year":"2020","journal-title":"Intensive Care Med"},{"issue":"6","key":"zoi230900r4","doi-asserted-by":"publisher","first-page":"1442","DOI":"10.1097\/CCM.0b013e3181de4406","article-title":"Assessment of incidence of severe sepsis in Sweden using different ways of abstracting International Classification of Diseases codes: difficulties with methods and interpretation of results.","volume":"38","author":"Wilhelms","year":"2010","journal-title":"Crit Care Med"},{"issue":"13","key":"zoi230900r5","doi-asserted-by":"publisher","first-page":"1241","DOI":"10.1001\/jama.2017.13836","article-title":"Incidence and trends of sepsis in US hospitals using clinical vs claims data, 2009-2014.","volume":"318","author":"Rhee","year":"2017","journal-title":"JAMA"},{"key":"zoi230900r6","first-page":"D17S","article-title":"Systematic medical record review in Skane. Diagnostic codes were often wrong in severe sepsis and septic shock.","volume":"112","author":"Johansson","year":"2015","journal-title":"Lakartidningen"},{"issue":"11","key":"zoi230900r7","doi-asserted-by":"publisher","DOI":"10.1097\/CCE.0000000000000788","article-title":"Accuracy of International Classification of Diseases, 10th Revision codes for identifying sepsis: a systematic review and meta-analysis.","volume":"4","author":"Liu","year":"2022","journal-title":"Crit Care Explor"},{"issue":"1","key":"zoi230900r8","doi-asserted-by":"publisher","first-page":"139","DOI":"10.1186\/s13054-015-0847-3","article-title":"Validity of administrative data in recording sepsis: a systematic review.","volume":"19","author":"Jolley","year":"2015","journal-title":"Crit Care"},{"issue":"12","key":"zoi230900r9","doi-asserted-by":"publisher","first-page":"2042","DOI":"10.1097\/CCM.0000000000005195","article-title":"Coronavirus disease 2019 as cause of viral sepsis: a systematic review and meta-analysis.","volume":"49","author":"Karakike","year":"2021","journal-title":"Crit Care Med"},{"issue":"1","key":"zoi230900r10","doi-asserted-by":"publisher","first-page":"173","DOI":"10.1055\/s-0042-1759880","article-title":"Update on sepsis epidemiology in the era of COVID-19.","volume":"44","author":"Shappell","year":"2023","journal-title":"Semin Respir Crit Care Med"},{"issue":"8","key":"zoi230900r12","doi-asserted-by":"publisher","first-page":"573","DOI":"10.7326\/0003-4819-147-8-200710160-00010","article-title":"The Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) statement: guidelines for reporting observational studies.","volume":"147","author":"von Elm","year":"2007","journal-title":"Ann Intern Med"},{"issue":"8","key":"zoi230900r14","doi-asserted-by":"publisher","first-page":"801","DOI":"10.1001\/jama.2016.0287","article-title":"The Third International Consensus Definitions for Sepsis and Septic Shock (Sepsis-3).","volume":"315","author":"Singer","year":"2016","journal-title":"JAMA"},{"issue":"3","key":"zoi230900r15","doi-asserted-by":"publisher","first-page":"599","DOI":"10.1152\/jappl.1979.46.3.599","article-title":"Simple, accurate equations for human blood O2 dissociation computations.","volume":"46","author":"Severinghaus","year":"1979","journal-title":"J Appl Physiol Respir Environ Exerc Physiol"},{"issue":"3","key":"zoi230900r16","doi-asserted-by":"publisher","first-page":"e272","DOI":"10.1097\/CCM.0000000000005318","article-title":"Peripheral oxygen saturation facilitates assessment of respiratory dysfunction in the sequential organ failure assessment score with implications for the Sepsis-3 criteria.","volume":"50","author":"Valik","year":"2022","journal-title":"Crit Care Med"},{"issue":"5","key":"zoi230900r17","doi-asserted-by":"publisher","first-page":"699","DOI":"10.3171\/jns.1988.69.5.0699","article-title":"A comparison of the Glasgow Coma Scale and the Reaction Level Scale (RLS85).","volume":"69","author":"Starmark","year":"1988","journal-title":"J Neurosurg"},{"issue":"6","key":"zoi230900r18","doi-asserted-by":"publisher","first-page":"933","DOI":"10.1007\/s00134-003-1757-4","article-title":"Comparison of the Glasgow Coma Scale and the Reaction Level Scale for assessment of cerebral responsiveness in the critically ill.","volume":"29","author":"Walther","year":"2003","journal-title":"Intensive Care Med"},{"issue":"5","key":"zoi230900r19","doi-asserted-by":"publisher","DOI":"10.1097\/CCE.0000000000000697","article-title":"New, useful criteria for assessing the evidence of infection in sepsis research.","volume":"4","author":"Mellhammar","year":"2022","journal-title":"Crit Care Explor"},{"issue":"5","key":"zoi230900r21","doi-asserted-by":"publisher","first-page":"373","DOI":"10.1016\/0021-9681(87)90171-8","article-title":"A new method of classifying prognostic comorbidity in longitudinal studies: development and validation.","volume":"40","author":"Charlson","year":"1987","journal-title":"J Chronic Dis"},{"issue":"1","key":"zoi230900r24","doi-asserted-by":"publisher","first-page":"38","DOI":"10.1080\/23744235.2018.1511056","article-title":"Epidemiology of community-acquired sepsis in the Faroe Islands\u2014a prospective observational study.","volume":"51","author":"Todorovic Markovic","year":"2019","journal-title":"Infect Dis (Lond)"},{"issue":"10219","key":"zoi230900r25","doi-asserted-by":"publisher","first-page":"200","DOI":"10.1016\/S0140-6736(19)32989-7","article-title":"Global, regional, and national sepsis incidence and mortality, 1990-2017: analysis for the Global Burden of Disease Study.","volume":"395","author":"Rudd","year":"2020","journal-title":"Lancet"},{"issue":"6","key":"zoi230900r26","doi-asserted-by":"publisher","first-page":"e360","DOI":"10.1016\/S2589-7500(21)00077-7","article-title":"Changes in the incidence of invasive disease due to Streptococcus pneumoniae, Haemophilus influenzae, and Neisseria meningitidis during the COVID-19 pandemic in 26 countries and territories in the Invasive Respiratory Infection Surveillance Initiative: a prospective analysis of surveillance data.","volume":"3","author":"Brueggemann","year":"2021","journal-title":"Lancet Digit Health"},{"issue":"8","key":"zoi230900r27","doi-asserted-by":"publisher","first-page":"762","DOI":"10.1001\/jama.2016.0288","article-title":"Assessment of clinical criteria for sepsis: for the Third International Consensus Definitions for Sepsis and Septic Shock (Sepsis-3).","volume":"315","author":"Seymour","year":"2016","journal-title":"JAMA"},{"issue":"12","key":"zoi230900r28","doi-asserted-by":"publisher","DOI":"10.1136\/bmjopen-2015-009487","article-title":"Validation and optimisation of an ICD-10-coded case definition for sepsis using administrative health data.","volume":"5","author":"Jolley","year":"2015","journal-title":"BMJ Open"},{"issue":"2","key":"zoi230900r29","doi-asserted-by":"publisher","first-page":"155","DOI":"10.1016\/j.jclinepi.2006.05.013","article-title":"Diagnosis-dependent misclassification of infections using administrative data variably affected incidence and mortality estimates in ICU patients.","volume":"60","author":"Gedeborg","year":"2007","journal-title":"J Clin Epidemiol"},{"issue":"1","key":"zoi230900r30","doi-asserted-by":"publisher","first-page":"42","DOI":"10.1186\/s13054-015-0771-6","article-title":"Discharge diagnoses versus medical record review in the identification of community-acquired sepsis.","volume":"19","author":"Wang","year":"2015","journal-title":"Crit Care"},{"issue":"4","key":"zoi230900r31","doi-asserted-by":"publisher","first-page":"945","DOI":"10.1097\/CCM.0b013e31827466f1","article-title":"Severe sepsis cohorts derived from claims-based strategies appear to be biased toward a more severely ill patient population.","volume":"41","author":"Whittaker","year":"2013","journal-title":"Crit Care Med"},{"issue":"11","key":"zoi230900r32","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pmed.1002184","article-title":"Will 10 million people die a year due to antimicrobial resistance by 2050?","volume":"13","author":"de Kraker","year":"2016","journal-title":"PLoS Med"},{"issue":"1","key":"zoi230900r33","doi-asserted-by":"publisher","first-page":"56","DOI":"10.1016\/S1473-3099(18)30605-4","article-title":"Attributable deaths and disability-adjusted life-years caused by infections with antibiotic-resistant bacteria in the EU and the European Economic Area in 2015: a population-level modelling analysis.","volume":"19","author":"Cassini","year":"2019","journal-title":"Lancet Infect Dis"},{"issue":"10","key":"zoi230900r34","doi-asserted-by":"publisher","first-page":"1091","DOI":"10.1016\/j.ajic.2017.04.005","article-title":"Impact of an electronic sepsis initiative on antibiotic use and health care facility-onset Clostridium difficile infection rates.","volume":"45","author":"Hiensch","year":"2017","journal-title":"Am J Infect Control"},{"issue":"5","key":"zoi230900r35","doi-asserted-by":"publisher","first-page":"759","DOI":"10.1097\/CCM.0000000000002264","article-title":"Delays from first medical contact to antibiotic administration for sepsis.","volume":"45","author":"Seymour","year":"2017","journal-title":"Crit Care Med"},{"issue":"18","key":"zoi230900r36","doi-asserted-by":"publisher","first-page":"1958","DOI":"10.1177\/2047487317724009","article-title":"Severe infections and subsequent delayed cardiovascular disease.","volume":"24","author":"Bergh","year":"2017","journal-title":"Eur J Prev Cardiol"},{"issue":"9","key":"zoi230900r37","doi-asserted-by":"publisher","first-page":"797","DOI":"10.1056\/NEJMoa1705835","article-title":"Adjunctive glucocorticoid therapy in patients with septic shock.","volume":"378","author":"Venkatesh","year":"2018","journal-title":"N Engl J Med"},{"key":"zoi230900r11","volume-title":"Global report on the epidemiology and burden of sepsis: current evidence, identifying gaps and future directions","author":"WHO","year":"2020"},{"key":"zoi230900r13","volume-title":"International Statistical Classification of Diseases, Tenth Revision (ICD-10)","author":"World Health Organization","year":"1992"},{"key":"zoi230900r23","volume-title":"Assessing the health burden of infections with antibiotic-resistant bacteria in the EU\/EEA, 2016-2020","author":"European Centre for Disease Prevention and Control","year":"2022"},{"key":"zoi230900r20","unstructured":"EUCAST. EUCAST clinical breakpoint table. 2019. Accessed August 4, 2023. https:\/\/www.eucast.org\/clinical_breakpoints"},{"key":"zoi230900r22","unstructured":"SCB. Statistikdatabasen. 2021. Accessed August 4, 2023. https:\/\/www.statistikdatabasen.scb.se\/pxweb\/sv\/ssd\/"}],"container-title":["JAMA Network Open"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/jamanetwork.com\/journals\/jamanetworkopen\/articlepdf\/2808870\/mellhammar_2023_oi_230900_1692735442.82466.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,8,29]],"date-time":"2023-08-29T15:32:48Z","timestamp":1693323168000},"score":1,"resource":{"primary":{"URL":"https:\/\/jamanetwork.com\/journals\/jamanetworkopen\/fullarticle\/2808870"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,8,29]]},"references-count":37,"journal-issue":{"issue":"8","published-print":{"date-parts":[[2023,8,1]]}},"URL":"https:\/\/doi.org\/10.1001\/jamanetworkopen.2023.31168","relation":{},"ISSN":["2574-3805"],"issn-type":[{"value":"2574-3805","type":"electronic"}],"subject":[],"published":{"date-parts":[[2023,8,29]]}}}