{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,2]],"date-time":"2026-04-02T19:16:41Z","timestamp":1775157401596,"version":"3.50.1"},"reference-count":23,"publisher":"Wiley","issue":"2","license":[{"start":{"date-parts":[[2008,12,31]],"date-time":"2008-12-31T00:00:00Z","timestamp":1230681600000},"content-version":"vor","delay-in-days":4717,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Protein Science"],"published-print":{"date-parts":[[1996,2]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>We describe a suite of programs, PROMOTIF, that analyzes a protein coordinate file and provides details about the structural motifs in the protein. The program currently analyzes the following structural features: secondary structure; <jats:italic>\u03b2\u2010<\/jats:italic> and <jats:italic>\u03b3<\/jats:italic>\u2010turns; helical geometry and interactions; <jats:italic>\u03b2<\/jats:italic>\u2010strands and <jats:italic>\u03b2<\/jats:italic>\u2010sheet topology; <jats:italic>\u03b2<\/jats:italic>\u2010bulges; <jats:italic>\u03b2<\/jats:italic>\u2010hairpins; <jats:italic>\u03b2\u2010\u03b1\u2010\u03b2<\/jats:italic> units and <jats:italic>\u03a8<\/jats:italic>\u2010loops; disulphide bridges; and main\u2010chain hydrogen bonding patterns. PROMOTIF creates postscript files showing the examples of each type of motif in the protein, and a summary page. The program can also be used to compare motifs in a group of related structures, such as an ensemble of NMR structures.<\/jats:p>","DOI":"10.1002\/pro.5560050204","type":"journal-article","created":{"date-parts":[[2010,7,12]],"date-time":"2010-07-12T05:24:46Z","timestamp":1278912286000},"page":"212-220","source":"Crossref","is-referenced-by-count":897,"title":["PROMOTIF\u2014A program to identify and analyze structural motifs in proteins"],"prefix":"10.1002","volume":"5","author":[{"given":"E. Gail","family":"Hutchinson","sequence":"first","affiliation":[]},{"given":"Janet M.","family":"Thornton","sequence":"additional","affiliation":[]}],"member":"311","published-online":{"date-parts":[[2008,12,31]]},"reference":[{"key":"e_1_2_1_2_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0022-2836(77)80200-3"},{"key":"e_1_2_1_3_1","doi-asserted-by":"publisher","DOI":"10.1002\/pro.5560021004"},{"key":"e_1_2_1_4_1","doi-asserted-by":"publisher","DOI":"10.1038\/357543a0"},{"key":"e_1_2_1_5_1","doi-asserted-by":"publisher","DOI":"10.1016\/0014-5793(87)80487-8"},{"key":"e_1_2_1_6_1","doi-asserted-by":"publisher","DOI":"10.1093\/protein\/4.3.245"},{"key":"e_1_2_1_7_1","doi-asserted-by":"publisher","DOI":"10.1002\/prot.340080303"},{"key":"e_1_2_1_8_1","doi-asserted-by":"publisher","DOI":"10.1002\/pro.5560031206"},{"key":"e_1_2_1_9_1","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(70)90173-7"},{"key":"e_1_2_1_10_1","doi-asserted-by":"publisher","DOI":"10.1002\/bip.360221211"},{"key":"e_1_2_1_11_1","doi-asserted-by":"publisher","DOI":"10.1016\/0005-2795(73)90350-4"},{"key":"e_1_2_1_12_1","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(88)90368-3"},{"key":"e_1_2_1_13_1","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(86)90280-9"},{"key":"e_1_2_1_14_1","doi-asserted-by":"publisher","DOI":"10.1093\/protein\/6.5.485"},{"key":"e_1_2_1_15_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0065-3233(08)60520-3"},{"key":"e_1_2_1_16_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0065-3233(08)60063-7"},{"key":"e_1_2_1_17_1","doi-asserted-by":"publisher","DOI":"10.1002\/prot.340090107"},{"key":"e_1_2_1_18_1","doi-asserted-by":"publisher","DOI":"10.1038\/316170a0"},{"key":"e_1_2_1_19_1","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(89)90583-4"},{"key":"e_1_2_1_20_1","doi-asserted-by":"publisher","DOI":"10.1038\/271618a0"},{"key":"e_1_2_1_21_1","doi-asserted-by":"publisher","DOI":"10.1002\/bip.1968.360061006"},{"key":"e_1_2_1_22_1","doi-asserted-by":"publisher","DOI":"10.1021\/bi00167a002"},{"key":"e_1_2_1_23_1","doi-asserted-by":"publisher","DOI":"10.1016\/0022-2836(88)90103-9"},{"key":"e_1_2_1_24_1","doi-asserted-by":"publisher","DOI":"10.1093\/protein\/3.6.479"}],"container-title":["Protein Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.wiley.com\/onlinelibrary\/tdm\/v1\/articles\/10.1002%2Fpro.5560050204","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.wiley.com\/onlinelibrary\/tdm\/v1\/articles\/10.1002%2Fpro.5560050204","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1002\/pro.5560050204","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,10,26]],"date-time":"2023-10-26T16:03:45Z","timestamp":1698336225000},"score":1,"resource":{"primary":{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/10.1002\/pro.5560050204"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[1996,2]]},"references-count":23,"journal-issue":{"issue":"2","published-print":{"date-parts":[[1996,2]]}},"alternative-id":["10.1002\/pro.5560050204"],"URL":"https:\/\/doi.org\/10.1002\/pro.5560050204","archive":["Portico"],"relation":{},"ISSN":["0961-8368","1469-896X"],"issn-type":[{"value":"0961-8368","type":"print"},{"value":"1469-896X","type":"electronic"}],"subject":[],"published":{"date-parts":[[1996,2]]}}}