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The selection and development of stocks with desirable production traits, such as enhanced growth and disease resistance, are critical for improving production. In this study, we leveraged a newly assembled, high\u2010quality genome sequence from a Philippine population to perform genome\u2010wide scans for SNPs associated with key production traits. Using cohort\u2010based extreme phenotype GWAS (XP\u2010GWAS), we identified variants linked to resistance against white spot syndrome virus (WSSV), body weight, and carapace length\u2010to\u2010abdomen length (CL\/AL) ratio. Candidate genes previously implicated in immune defense and growth regulation were located within 1\u2010Mb regions surrounding these variants, reinforcing their likely functional involvement and providing biological support for the associations. These findings highlight genomic loci and gene candidates of direct relevance to selective breeding, offering molecular markers with potential utility in stock improvement programs for\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>P. monodon<\/jats:italic>\n                    <\/jats:styled-content>\n                    . These genomic data, alongside the identified polymorphisms, constitute a valuable resource for enhancement of production and selective breeding strategies in the Penaeid species, contributing to the improvement of shrimp aquaculture.\n                  <\/jats:p>","DOI":"10.1002\/age.70082","type":"journal-article","created":{"date-parts":[[2026,3,16]],"date-time":"2026-03-16T11:43:25Z","timestamp":1773661405000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Genome Sequencing and Genome\u2010Wide Analysis Uncover Candidate Genes and Loci Linked to Key Production Traits in the Philippine Black Tiger Shrimp (\n                    <i>Penaeus monodon<\/i>\n                    )"],"prefix":"10.1002","volume":"57","author":[{"ORCID":"https:\/\/orcid.org\/0009-0008-9845-5666","authenticated-orcid":false,"given":"Kreighton E.","family":"Cadorna","sequence":"first","affiliation":[{"name":"Marine Genomics and Molecular 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