{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,22]],"date-time":"2026-10-22T10:39:06Z","timestamp":1792665546802,"version":"4.5.0"},"reference-count":62,"publisher":"Wiley","issue":"6","license":[{"start":{"date-parts":[[2026,10,22]],"date-time":"2026-10-22T00:00:00Z","timestamp":1792627200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"},{"start":{"date-parts":[[2026,10,22]],"date-time":"2026-10-22T00:00:00Z","timestamp":1792627200000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/doi.wiley.com\/10.1002\/tdm_license_1.1"}],"content-domain":{"domain":["onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["Animal Genetics"],"published-print":{"date-parts":[[2026,12]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n                  <jats:p>\n                    Carcass and meat quality traits are economically important in poultry breeding. To investigate their genetic architecture and identify potential candidate regulators, we performed whole\u2010genome resequencing (WGS) and an integrative genome\u2010wide association study (GWAS) on 315 breast muscle samples from yellow\u2010feathered broilers, jointly analyzing SNP and Indels across 14 carcass and meat quality traits. We identified about 13.5 million SNPs and 1.24 million Indels. Across 14 carcass and meat quality traits, 364 significant SNPs (\n                    <jats:italic>p<\/jats:italic>\n                    \u2009&lt;\u20091.0\u2009\u00d7\u200910\n                    <jats:sup>6<\/jats:sup>\n                    ) and 52 significant Indels (\n                    <jats:italic>p<\/jats:italic>\n                    \u2009&lt;\u20091.0\u2009\u00d7\u200910\n                    <jats:sup>\u22126<\/jats:sup>\n                    ) were detected, clustering into nine genomic regions. Key candidate genes included\n                    <jats:italic>CNTN5<\/jats:italic>\n                    for leg muscle percentage,\n                    <jats:italic>SORCS1<\/jats:italic>\n                    for crude fat (CF),\n                    <jats:italic>CNN3<\/jats:italic>\n                    for shear force, and\n                    <jats:italic>APOB<\/jats:italic>\n                    and\n                    <jats:italic>SQLE<\/jats:italic>\n                    for total cholesterol. We further used tissue\u2010specific transcriptome\u2010derived lncRNA annotations to identify candidate lncRNAs located within \u00b1100\u2009kb of significant GWAS loci. These lncRNAs were prioritized as genomic\u2010proximity\u2010based candidates for future functional validation. Functional enrichment analysis indicated involvement of PI3K\u2010Akt and Wnt signaling pathways, lipid metabolism, and cytoskeletal regulation. These findings provide new insights into the genetic basis of carcass yield and meat quality traits in yellow\u2010feathered chickens and offer molecular markers and regulatory candidates for future molecular breeding strategies.\n                  <\/jats:p>","DOI":"10.1002\/age.70224","type":"journal-article","created":{"date-parts":[[2026,10,22]],"date-time":"2026-10-22T09:51:02Z","timestamp":1792662662000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Resequencing\u2010Based GWAS Highlights SNP and Indel Loci and lncRNA Candidates for Carcass Yield and Meat Quality in Yellow\u2010Feathered Broilers"],"prefix":"10.1002","volume":"57","author":[{"ORCID":"https:\/\/orcid.org\/0009-0006-9618-2102","authenticated-orcid":false,"given":"Ziqing","family":"Li","sequence":"first","affiliation":[{"name":"College of Animal Science and Technology Nanjing Agricultural University  Nanjing China"},{"name":"Zhejiang Academy 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