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Nelore, the most numerically important indicine breed worldwide, diverges substantially from the taurine\u2010derived reference genome used for most bovine SV discovery, leaving its structural variation largely uncharacterized. Long\u2010read sequencing of 20 Nelore bulls with two complementary callers (Sniffles2, SVIM) yielded 82\u2009581 dual\u2010caller concordant SVs, of which 74\u2009222 insertions and deletions passed independent read\u2010based validation. Ensembl VEP annotation identified 561 HIGH\u2010impact variants (0.75% of the catalog) across 7040 protein\u2010coding genes. Only 22\u2009894 SVs (30.7%), including 147 of 561 HIGH\u2010impact variants (26.2%), could be tagged by an existing BovineHD SNP (\n                    <jats:italic>r<\/jats:italic>\n                    <jats:sup>2<\/jats:sup>\n                    \u2009\u2265\u20090.8), showing that routine array genotyping captures a minority of this variation. Intersection with an indicine\u2010ancestry SNP map identified 6114 SVs (8.2%) enriched in\n                    <jats:styled-content style=\"fixed-case\">\n                      <jats:italic>Bos indicus<\/jats:italic>\n                    <\/jats:styled-content>\n                    , including 61 HIGH\u2010impact variants overlapping genes with plausible roles in immune\/inflammatory defense and oxidative\u2010stress response, providing a resource and candidate variant set for genomic selection and tropical\u2010adaptation studies in indicine cattle.\n                  <\/jats:p>","DOI":"10.1002\/age.70225","type":"journal-article","created":{"date-parts":[[2026,10,18]],"date-time":"2026-10-18T23:06:57Z","timestamp":1792364817000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["A Nelore Cattle Structural Variant Catalog"],"prefix":"10.1002","volume":"57","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-4002-6793","authenticated-orcid":false,"given":"Thales","family":"de Lima Silva","sequence":"first","affiliation":[{"name":"Department of Animal Nutrition &amp; 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