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When integrated with traditional neurobiological approaches, developing an archival, digital repository of morphological images can offer the opportunity to improve our understanding of whole neural systems without the issues of surgical intervention and negate the risk of damage and artefactual interpretation. This review focuses on current approaches to bioimaging the peripheral (sense organs) and central (brain) nervous systems in extant fishes (cartilaginous and bony) and non\u2010avian reptiles\n                    <jats:italic>in situ<\/jats:italic>\n                    . Magnetic resonance imaging (MRI), micro\u2010computed tomography (\u03bcCT), both super\u2010resolution track density imaging and diffusion tensor\u2010based imaging, and a range of other new technological advances are presented, together with novel approaches in optimizing both contrast and resolution, for developing detailed neuroanatomical atlases and enhancing comparative analyses of museum specimens. For MRI, tissue preparation, including choice of fixative, impacts tissue MR responses, where both resolving power and signal\u2010to\u2010noise ratio improve as field strength increases. Time in fixative, concentration of contrast agent, and duration of immersion in the contrast agent can also significantly affect relaxation times, and thus image quality. For \u03bcCT, the use of contrast\u2010enhancing stains (iodine\u2010, non\u2010iodine\u2010, or nanoparticle\u2010based) is critical, where the type of fixative used, and the concentration of stain and duration of staining time often require species\u2010specific optimization. Advanced reconstruction algorithms to reduce noise and artifacts and post\u2010processing techniques, such as deconvolution and filtering, are now being used to improve image quality and resolution.\n                  <\/jats:p>","DOI":"10.1002\/ar.25566","type":"journal-article","created":{"date-parts":[[2024,9,3]],"date-time":"2024-09-03T01:45:24Z","timestamp":1725327924000},"page":"826-852","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":13,"title":["Bioimaging of sense organs and the central nervous system in extant fishes and reptiles in situ: A review"],"prefix":"10.1002","volume":"309","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-6236-0771","authenticated-orcid":false,"given":"Shaun P.","family":"Collin","sequence":"first","affiliation":[{"name":"School of Agriculture, Biomedicine and Environment La Trobe University  Bundoora Victoria Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7870-9066","authenticated-orcid":false,"given":"Kara E.","family":"Yopak","sequence":"additional","affiliation":[{"name":"Department of Biology and Marine Biology University of North Carolina Wilmington  Wilmington North Carolina USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2794-2914","authenticated-orcid":false,"given":"Jenna M.","family":"Crowe\u2010Riddell","sequence":"additional","affiliation":[{"name":"School of Agriculture, Biomedicine and Environment La Trobe University  Bundoora Victoria Australia"},{"name":"School of Biological Sciences The University of Adelaide  Adelaide South Australia Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9566-1394","authenticated-orcid":false,"given":"Victoria","family":"Camilieri\u2010Asch","sequence":"additional","affiliation":[{"name":"Max Planck Queensland Centre for the Materials Science of Extracellular Matrices Queensland University of Technology  Kelvin Grove Queensland Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Caroline C.","family":"Kerr","sequence":"additional","affiliation":[{"name":"School of Agriculture, Biomedicine and Environment La Trobe University  Bundoora Victoria Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hope","family":"Robins","sequence":"additional","affiliation":[{"name":"School of Agriculture, Biomedicine and Environment La Trobe University  Bundoora Victoria Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Myoung Hoon","family":"Ha","sequence":"additional","affiliation":[{"name":"School of Agriculture, Biomedicine and Environment La Trobe University  Bundoora Victoria Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Annalise","family":"Ceddia","sequence":"additional","affiliation":[{"name":"School of Agriculture, Biomedicine and Environment La Trobe University  Bundoora Victoria Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7459-1267","authenticated-orcid":false,"given":"Travis L.","family":"Dutka","sequence":"additional","affiliation":[{"name":"School of Agriculture, Biomedicine and Environment La Trobe University  Bundoora Victoria Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3001-983X","authenticated-orcid":false,"given":"Lucille","family":"Chapuis","sequence":"additional","affiliation":[{"name":"School of Agriculture, Biomedicine and Environment La Trobe University  Bundoora Victoria Australia"},{"name":"School of Biological Sciences University of Bristol  Bristol UK"},{"name":"Leigh Marine Laboratory, Institute of Marine Science University of Auckland  Leigh New Zealand"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2024,9,2]]},"reference":[{"key":"e_1_2_13_2_1","unstructured":"Ajavon A. &Simonitis L.(2022).What's that smell? 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