{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,11,12]],"date-time":"2026-11-12T19:00:42Z","timestamp":1794510042674,"version":"4.9.1"},"reference-count":49,"publisher":"Wiley","issue":"8","license":[{"start":{"date-parts":[[2020,7,13]],"date-time":"2020-07-13T00:00:00Z","timestamp":1594598400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100000925","name":"National Health and Medical Research Council","doi-asserted-by":"publisher","award":["1024879"],"award-info":[{"award-number":["1024879"]}],"id":[{"id":"10.13039\/501100000925","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000925","name":"National Health and Medical Research Council","doi-asserted-by":"publisher","award":["1071822"],"award-info":[{"award-number":["1071822"]}],"id":[{"id":"10.13039\/501100000925","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000925","name":"National Health and Medical Research Council","doi-asserted-by":"publisher","award":["1159458"],"award-info":[{"award-number":["1159458"]}],"id":[{"id":"10.13039\/501100000925","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["acrjournals.onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["Arthritis &amp; Rheumatology"],"published-print":{"date-parts":[[2020,8]]},"abstract":"<jats:sec><jats:title>Objective<\/jats:title><jats:p>Ankylosing spondylitis (<jats:styled-content style=\"fixed-case\">AS<\/jats:styled-content>) is a common spondyloarthropathy primarily affecting the axial skeleton and strongly associated with <jats:italic><jats:styled-content style=\"fixed-case\">HLA<\/jats:styled-content>\u2013B*27<\/jats:italic> carriage. Genetic evidence implicates both autoinflammatory processes and autoimmunity against an <jats:italic><jats:styled-content style=\"fixed-case\">HLA<\/jats:styled-content>\u2013B*27<\/jats:italic>\u2013restricted autoantigen in immunopathology. In addition to articular symptoms, up to 70% of <jats:styled-content style=\"fixed-case\">AS<\/jats:styled-content> patients present with concurrent bowel inflammation, suggesting that adverse interactions between a genetically primed host immune system and the gut microbiome contribute to the disease. Accordingly, this study aimed to characterize adaptive immune responses to antigenic stimuli in <jats:styled-content style=\"fixed-case\">AS<\/jats:styled-content>.<\/jats:p><\/jats:sec><jats:sec><jats:title>Methods<\/jats:title><jats:p>The peripheral <jats:styled-content style=\"fixed-case\">CD<\/jats:styled-content>4 and <jats:styled-content style=\"fixed-case\">CD<\/jats:styled-content>8 T cell receptor (<jats:styled-content style=\"fixed-case\">TCR<\/jats:styled-content>) repertoire was profiled in <jats:styled-content style=\"fixed-case\">AS<\/jats:styled-content> patients (n = 47) and <jats:italic><jats:styled-content style=\"fixed-case\">HLA<\/jats:styled-content>\u2013B*27<\/jats:italic>\u2013matched healthy controls (n = 38). Repertoire diversity was estimated using the Normalized Shannon Diversity Entropy (<jats:styled-content style=\"fixed-case\">NSDE<\/jats:styled-content>) index, and univariate and multivariate statistical analyses were performed to characterize <jats:styled-content style=\"fixed-case\">AS<\/jats:styled-content>\u2010associated clonal signatures. Furthermore, T cell proliferation and cytokine production in response to immunogenic antigen exposure were investigated in vitro in peripheral blood mononuclear cells from <jats:styled-content style=\"fixed-case\">AS<\/jats:styled-content> patients (n = 19) and <jats:italic><jats:styled-content style=\"fixed-case\">HLA<\/jats:styled-content>\u2013B*27<\/jats:italic>\u2013matched healthy controls (n = 14).<\/jats:p><\/jats:sec><jats:sec><jats:title>Results<\/jats:title><jats:p>Based on the <jats:styled-content style=\"fixed-case\">NSDE<\/jats:styled-content> measure of sample diversity across <jats:styled-content style=\"fixed-case\">CD<\/jats:styled-content>4 and <jats:styled-content style=\"fixed-case\">CD<\/jats:styled-content>8 T cell repertoires, <jats:styled-content style=\"fixed-case\">AS<\/jats:styled-content> patients showed increased <jats:styled-content style=\"fixed-case\">TCR<\/jats:styled-content> diversity compared to healthy controls (for <jats:styled-content style=\"fixed-case\">CD<\/jats:styled-content>4 T cells, <jats:italic>P<\/jats:italic> = 7.8 \u00d7 10<jats:sup>\u22126<\/jats:sup>; for <jats:styled-content style=\"fixed-case\">CD<\/jats:styled-content>8 T cells, <jats:italic>P<\/jats:italic> = 9.3 \u00d7 10<jats:sup>\u22124<\/jats:sup>), which was attributed to a significant reduction in the magnitude of peripheral T cell expansions globally. Upon in vitro stimulation, fewer T cells from <jats:styled-content style=\"fixed-case\">AS<\/jats:styled-content> patients than from healthy controls expressed interferon\u2010\u03b3 (for <jats:styled-content style=\"fixed-case\">CD<\/jats:styled-content>8 T cells, <jats:italic>P<\/jats:italic> = 0.03) and tumor necrosis factor (for <jats:styled-content style=\"fixed-case\">CD<\/jats:styled-content>4 T cells, <jats:italic>P<\/jats:italic> = 0.01; for <jats:styled-content style=\"fixed-case\">CD<\/jats:styled-content>8 T cells, <jats:italic>P<\/jats:italic> = 0.002). In addition, the <jats:styled-content style=\"fixed-case\">CD<\/jats:styled-content>8 <jats:styled-content style=\"fixed-case\">TCR<\/jats:styled-content> signature was altered in <jats:italic><jats:styled-content style=\"fixed-case\">HLA<\/jats:styled-content>\u2013B*27<\/jats:italic>+ <jats:styled-content style=\"fixed-case\">AS<\/jats:styled-content> patients compared to healthy controls, with significantly expanded Epstein\u2010Barr virus\u2013specific clonotypes (<jats:italic>P<\/jats:italic> = 0.03) and cytomegalovirus\u2010specific clonotypes (<jats:italic>P<\/jats:italic> = 0.02). <jats:italic>HLA\u2013B*27<\/jats:italic>+ AS patients also showed an increased incidence of \u201cpublic\u201d CD8 TCRs, representing identical clonotypes emerging in response to common antigen encounters, including homologous clonotypes matching those previously isolated from individuals with bacterial\u2010induced reactive arthritis.<\/jats:p><\/jats:sec><jats:sec><jats:title>Conclusion<\/jats:title><jats:p>The dynamics of peripheral T cell responses in AS patients are altered, suggesting that differential antigen exposure and disrupted adaptive immunity are underlying features of the disease.<\/jats:p><\/jats:sec>","DOI":"10.1002\/art.41252","type":"journal-article","created":{"date-parts":[[2020,3,12]],"date-time":"2020-03-12T05:53:34Z","timestamp":1583992414000},"page":"1289-1302","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":69,"title":["Altered Repertoire Diversity and Disease\u2010Associated Clonal Expansions Revealed by T Cell Receptor Immunosequencing in Ankylosing Spondylitis Patients"],"prefix":"10.1002","volume":"72","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-0231-8771","authenticated-orcid":false,"given":"Aimee L.","family":"Hanson","sequence":"first","affiliation":[{"name":"University of Queensland  Brisbane Queensland Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hendrik J.","family":"Nel","sequence":"additional","affiliation":[{"name":"University of Queensland  Brisbane Queensland Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Linda","family":"Bradbury","sequence":"additional","affiliation":[{"name":"Queensland University of Technology and Translational Research Institute  Brisbane Queensland Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Julie","family":"Phipps","sequence":"additional","affiliation":[{"name":"Queensland University of Technology and Translational Research Institute  Brisbane Queensland Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0518-8386","authenticated-orcid":false,"given":"Ranjeny","family":"Thomas","sequence":"additional","affiliation":[{"name":"University of Queensland  Brisbane Queensland Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kim\u2010Anh","family":"L\u00ea Cao","sequence":"additional","affiliation":[{"name":"University of Melbourne  Melbourne Victoria Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tony J.","family":"Kenna","sequence":"additional","affiliation":[{"name":"Queensland University of Technology and Translational Research Institute  Brisbane Queensland Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Matthew A.","family":"Brown","sequence":"additional","affiliation":[{"name":"Queensland University of Technology and Translational Research Institute, Brisbane, Queensland, Australia, and Guy's and St Thomas' NHS Foundation Trust and King's College London NIHR Biomedical Research Centre, King's College London  UK"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2020,7,13]]},"reference":[{"key":"e_1_2_7_2_1","doi-asserted-by":"publisher","DOI":"10.1093\/rheumatology\/ket387"},{"key":"e_1_2_7_3_1","doi-asserted-by":"publisher","DOI":"10.1038\/ng.2007.17"},{"key":"e_1_2_7_4_1","doi-asserted-by":"publisher","DOI":"10.1038\/ng.513"},{"key":"e_1_2_7_5_1","doi-asserted-by":"publisher","DOI":"10.1038\/ng.2667"},{"key":"e_1_2_7_6_1","doi-asserted-by":"publisher","DOI":"10.1038\/nrg3502"},{"key":"e_1_2_7_7_1","doi-asserted-by":"publisher","DOI":"10.1038\/ncomms8146"},{"key":"e_1_2_7_8_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(73)91360-3"},{"key":"e_1_2_7_9_1","doi-asserted-by":"publisher","DOI":"10.1056\/NEJM197304052881403"},{"key":"e_1_2_7_10_1","first-page":"2273","article-title":"The evolution of spondyloarthropathies in relation to gut histology, part II. Histological aspects","volume":"22","author":"Meilants H","year":"1995","journal-title":"J Rheumatol"},{"key":"e_1_2_7_11_1","doi-asserted-by":"publisher","DOI":"10.1093\/rheumatology\/XXVII.suppl_2.95"},{"key":"e_1_2_7_12_1","doi-asserted-by":"publisher","DOI":"10.1136\/annrheumdis-2016-210000"},{"key":"e_1_2_7_13_1","doi-asserted-by":"publisher","DOI":"10.1136\/annrheumdis-2019-215763"},{"key":"e_1_2_7_14_1","doi-asserted-by":"publisher","DOI":"10.1038\/ng.3528"},{"key":"e_1_2_7_15_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1008038"},{"key":"e_1_2_7_16_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.90.20.9330"},{"key":"e_1_2_7_17_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0140-6736(95)91089-1"},{"key":"e_1_2_7_18_1","doi-asserted-by":"publisher","DOI":"10.1046\/j.1365-2249.2003.02289.x"},{"key":"e_1_2_7_19_1","doi-asserted-by":"publisher","DOI":"10.1002\/art.38249"},{"key":"e_1_2_7_20_1","doi-asserted-by":"publisher","DOI":"10.1002\/art.39734"},{"key":"e_1_2_7_21_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.jaut.2016.12.008"},{"key":"e_1_2_7_22_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0092-8674(02)00675-X"},{"key":"e_1_2_7_23_1","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M111.289488"},{"key":"e_1_2_7_24_1","doi-asserted-by":"publisher","DOI":"10.1182\/blood-2009-04-217604"},{"key":"e_1_2_7_25_1","doi-asserted-by":"publisher","DOI":"10.1101\/gr.115428.110"},{"key":"e_1_2_7_26_1","doi-asserted-by":"publisher","DOI":"10.1038\/cr.2012.1"},{"key":"e_1_2_7_27_1","doi-asserted-by":"publisher","DOI":"10.1002\/art.1780270401"},{"key":"e_1_2_7_28_1","article-title":"Practical use of methods for imputation of HLA alleles from SNP genotype data","author":"Motyer A","year":"2016","journal-title":"bioRxive"},{"key":"e_1_2_7_29_1","doi-asserted-by":"publisher","DOI":"10.1093\/clinchem\/41.5.687"},{"key":"e_1_2_7_30_1","volume-title":"R: a language and environment for statistical computing","author":"R Core Team","year":"2018"},{"key":"e_1_2_7_31_1","doi-asserted-by":"publisher","DOI":"10.1093\/nar\/gkx760"},{"key":"e_1_2_7_32_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pcbi.1005752"},{"key":"e_1_2_7_33_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.jim.2003.09.004"},{"key":"e_1_2_7_34_1","first-page":"2286","article-title":"A new approach to defining disease status in ankylosing spondylitis: the Bath Ankylosing Spondylitis Disease Activity Index","volume":"21","author":"Garrett S","year":"1994","journal-title":"J Rheumatol"},{"key":"e_1_2_7_35_1","doi-asserted-by":"publisher","DOI":"10.1080\/2162402X.2014.1001230"},{"key":"e_1_2_7_36_1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-12-253"},{"key":"e_1_2_7_37_1","doi-asserted-by":"crossref","first-page":"3830","DOI":"10.4049\/jimmunol.162.7.3830","article-title":"Common intra\u2010articular T cell expansions in patients with reactive arthritis: identical \u03b2\u2010chain junctional sequences and cytotoxicity toward HLA\u2010B27","volume":"162","author":"Dulphy N","year":"1999","journal-title":"J Immunol"},{"key":"e_1_2_7_38_1","doi-asserted-by":"publisher","DOI":"10.1034\/j.1399-0039.2002.600404.x"},{"key":"e_1_2_7_39_1","doi-asserted-by":"publisher","DOI":"10.1002\/art.40028"},{"key":"e_1_2_7_40_1","doi-asserted-by":"publisher","DOI":"10.1093\/rheumatology\/kex517"},{"key":"e_1_2_7_41_1","doi-asserted-by":"publisher","DOI":"10.1038\/nature02119"},{"key":"e_1_2_7_42_1","doi-asserted-by":"publisher","DOI":"10.1002\/art.39041"},{"key":"e_1_2_7_43_1","doi-asserted-by":"publisher","DOI":"10.1002\/art.34423"},{"key":"e_1_2_7_44_1","doi-asserted-by":"publisher","DOI":"10.1136\/ard.45.12.974"},{"key":"e_1_2_7_45_1","doi-asserted-by":"publisher","DOI":"10.1136\/ard.46.6.493-b"},{"key":"e_1_2_7_46_1","doi-asserted-by":"publisher","DOI":"10.2119\/molmed.2016.00031"},{"key":"e_1_2_7_47_1","doi-asserted-by":"publisher","DOI":"10.1002\/art.23512"},{"key":"e_1_2_7_48_1","doi-asserted-by":"publisher","DOI":"10.1002\/art.38318"},{"key":"e_1_2_7_49_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1902649116"},{"key":"e_1_2_7_50_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pbio.3000314"}],"container-title":["Arthritis &amp; Rheumatology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.wiley.com\/onlinelibrary\/tdm\/v1\/articles\/10.1002%2Fart.41252","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1002\/art.41252","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/full-xml\/10.1002\/art.41252","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/acrjournals.onlinelibrary.wiley.com\/doi\/pdf\/10.1002\/art.41252","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,10,8]],"date-time":"2025-10-08T18:26:34Z","timestamp":1759947994000},"score":1,"resource":{"primary":{"URL":"https:\/\/acrjournals.onlinelibrary.wiley.com\/doi\/10.1002\/art.41252"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,7,13]]},"references-count":49,"journal-issue":{"issue":"8","published-print":{"date-parts":[[2020,8]]}},"alternative-id":["10.1002\/art.41252"],"URL":"https:\/\/doi.org\/10.1002\/art.41252","archive":["Portico"],"relation":{},"ISSN":["2326-5191","2326-5205"],"issn-type":[{"value":"2326-5191","type":"print"},{"value":"2326-5205","type":"electronic"}],"subject":[],"published":{"date-parts":[[2020,7,13]]},"assertion":[{"value":"2019-11-02","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2020-03-05","order":2,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2020-07-13","order":3,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}