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HNSCC accounts for more than 6 million cases worldwide, soaring mainly in the developing countries.<\/jats:p><\/jats:sec><jats:sec><jats:title>Recent findings<\/jats:title><jats:p>The aetiology of HNSCC is complex and multifactorial, involving both genetic and environmental factors. The critical role of microbiome, which includes bacteria, viruses, and fungi, is under spotlight due to the recent reports on their contribution in the development and progression of HNSCC. This review focuses on the effect of opportunistic pathogens on the host genome and epigenome, which contributes to the disease progression. Drawing parallels from the host\u2010pathogen interactions observed in other tumour types arising from the epithelial tissue such as colorectal cancer, the review also calls attention to the potential explorations of the role of pathogens in HNSCC biology and discusses the clinical implications of microbiome research in detection and treatment of HNSCC.<\/jats:p><\/jats:sec><jats:sec><jats:title>Conclusion<\/jats:title><jats:p>Our understanding of the genomic effects of the microbes on the disease progression and the mechanistic insights of the host\u2010pathogen interaction will pave way to novel treatment and preventive approaches in HNSCC.<\/jats:p><\/jats:sec>","DOI":"10.1002\/cnr2.1846","type":"journal-article","created":{"date-parts":[[2023,6,16]],"date-time":"2023-06-16T04:44:49Z","timestamp":1686890689000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":3,"title":["Influence of pathogens on host genome and epigenome in 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