{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,17]],"date-time":"2026-03-17T16:51:23Z","timestamp":1773766283674,"version":"3.50.1"},"reference-count":37,"publisher":"Wiley","issue":"6","license":[{"start":{"date-parts":[[2007,2,26]],"date-time":"2007-02-26T00:00:00Z","timestamp":1172448000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Cytometry Pt A"],"published-print":{"date-parts":[[2007,6]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:sec><jats:title>Background:<\/jats:title><jats:p>A major challenge in the post genomic era is to map and decipher the functional molecular networks of proteins directly in a cell or a tissue. This task requires technologies for the colocalization of random numbers of different molecular components (e.g. proteins) in one sample in one experiment.<\/jats:p><\/jats:sec><jats:sec><jats:title>Methods:<\/jats:title><jats:p>Multi\u2010epitope\u2010ligand\u2010\u201ckartographie\u201d (MELK) was developed as a microscopic imaging technology running cycles of iterative fluorescence tagging, imaging, and bleaching, to colocalize a large number of proteins in one sample (morphologically intact routinely fixed cells or tissue).<\/jats:p><\/jats:sec><jats:sec><jats:title>Results:<\/jats:title><jats:p>In the present study, 18 different cell surface proteins were colocalized by MELK in cells and tissue sections in different compartments of the human immune system. From the resulting sets of multidimensional binary vectors the most prominent groups of protein\u2013epitope arrangements were extracted and imaged as protein \u201ctoponome\u201d maps providing direct insight in the higher order topological organization of immune compartments uncovering new tissue domains. The data sets suggest that protein networks, topologically organized in proteomes in situ, obey a unique protein\u2010colocation and \u2010anticolocation code describable by three symbols.<\/jats:p><\/jats:sec><jats:sec><jats:title>Conclusion:<\/jats:title><jats:p>The technology has the potential to colocalize hundreds of proteins and other molecular components in one sample and may offer many applications in biology and medicine. \u00a9 2007 International Society for Analytical Cytology.<\/jats:p><\/jats:sec>","DOI":"10.1002\/cyto.a.20281","type":"journal-article","created":{"date-parts":[[2007,2,26]],"date-time":"2007-02-26T23:39:16Z","timestamp":1172533156000},"page":"352-360","source":"Crossref","is-referenced-by-count":37,"title":["A three\u2010symbol code for organized proteomes based on cyclical imaging of protein locations"],"prefix":"10.1002","volume":"71A","author":[{"given":"Walter","family":"Schubert","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"311","published-online":{"date-parts":[[2007,2,26]]},"reference":[{"key":"e_1_2_6_2_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.1062191"},{"key":"e_1_2_6_3_2","doi-asserted-by":"publisher","DOI":"10.1038\/ng0797-277"},{"key":"e_1_2_6_4_2","doi-asserted-by":"publisher","DOI":"10.1038\/35001009"},{"key":"e_1_2_6_5_2","doi-asserted-by":"publisher","DOI":"10.1038\/415180a"},{"key":"e_1_2_6_6_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.1090289"},{"key":"e_1_2_6_7_2","doi-asserted-by":"publisher","DOI":"10.1038\/415141a"},{"key":"e_1_2_6_8_2","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth726"},{"key":"e_1_2_6_9_2","doi-asserted-by":"publisher","DOI":"10.1038\/nature01626"},{"key":"e_1_2_6_10_2","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2184.2005.00342.x"},{"key":"e_1_2_6_11_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.1104635"},{"key":"e_1_2_6_12_2","doi-asserted-by":"publisher","DOI":"10.1126\/science.1105809"},{"key":"e_1_2_6_13_2","doi-asserted-by":"publisher","DOI":"10.1002\/cyto.b.10035"},{"key":"e_1_2_6_14_2","doi-asserted-by":"publisher","DOI":"10.1038\/nature02765"},{"key":"e_1_2_6_15_2","first-page":"333","article-title":"APP+ T lymphocytes selectively sorted to endomysial tubes in polymyositis displace NCAM\u2010expressing muscle fibers","volume":"62","author":"Schubert W","year":"1993","journal-title":"Eur J Cell Biol"},{"key":"e_1_2_6_16_2","doi-asserted-by":"publisher","DOI":"10.1038\/84701"},{"key":"e_1_2_6_17_2","doi-asserted-by":"publisher","DOI":"10.1038\/nbt927"},{"key":"e_1_2_6_18_2","doi-asserted-by":"publisher","DOI":"10.1117\/1.1583734"},{"key":"e_1_2_6_19_2","doi-asserted-by":"publisher","DOI":"10.1002\/cyto.a.20140"},{"key":"e_1_2_6_20_2","doi-asserted-by":"publisher","DOI":"10.1002\/cyto.a.20052"},{"key":"e_1_2_6_21_2","doi-asserted-by":"crossref","first-page":"32","DOI":"10.1055\/s-0038-1633920","article-title":"Automated tissue analysis\u2014a bioinformatics perspective","volume":"44","author":"Kriete A","year":"2005","journal-title":"Methods Inf Med"},{"key":"e_1_2_6_22_2","doi-asserted-by":"publisher","DOI":"10.1002\/cyto.a.20054"},{"key":"e_1_2_6_23_2","first-page":"189","article-title":"Topological proteomics, toponomics. 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Use of substances with immunomodulating activity for the treatment of amyotrophic lateral sclerosis. 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