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Zebrafish embryos with reduced Nodal signaling display an open anterior neural tube phenotype that is analogous to anencephaly. Previous work from our laboratory suggests that Nodal signaling acts through induction of the head mesendoderm and mesoderm. Head mesendoderm\/mesoderm then, through an unknown mechanism, promotes formation of the polarized neuroepithelium that is capable of undergoing the movements required for closure. We compared the transcriptome of embryos treated with a Nodal signaling inhibitor at sphere stage, which causes NTDs, to embryos treated at 30% epiboly, which does not cause NTDs. This screen identified over 3,000 transcripts with potential roles in anterior neurulation. Expression of several genes encoding components of tight and adherens junctions was significantly reduced, supporting the model that Nodal signaling regulates formation of the neuroepithelium. mRNAs involved in Wnt, FGF, and BMP signaling were also differentially expressed, suggesting these pathways might regulate anterior neurulation. In support of this, we found that pharmacological inhibition of FGF\u2013receptor function causes an open anterior NTD as well as loss of mesodermal derivatives. This suggests that Nodal and FGF signaling both promote anterior neurulation through induction of head mesoderm.<\/jats:p>","DOI":"10.1002\/dvg.23096","type":"journal-article","created":{"date-parts":[[2018,2,27]],"date-time":"2018-02-27T23:36:38Z","timestamp":1519774598000},"source":"Crossref","is-referenced-by-count":9,"title":["Identification of transcripts potentially involved in neural tube closure using RNA sequencing"],"prefix":"10.1002","volume":"56","author":[{"given":"Lexy M.","family":"Kindt","sequence":"first","affiliation":[{"name":"Department of Biology University of Minnesota Duluth  Duluth"},{"name":"Integrated Biosciences Graduate Program University of Minnesota  Duluth"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alicia R.","family":"Coughlin","sequence":"additional","affiliation":[{"name":"Department of Biology University of Minnesota Duluth  Duluth"},{"name":"Integrated Biosciences Graduate Program University of Minnesota  Duluth"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tianna R.","family":"Perosino","sequence":"additional","affiliation":[{"name":"Department of Biology University of Minnesota Duluth  Duluth"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Haley N.","family":"Ersfeld","sequence":"additional","affiliation":[{"name":"Department of Biology University of Minnesota Duluth  Duluth"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marshall","family":"Hampton","sequence":"additional","affiliation":[{"name":"Integrated Biosciences Graduate Program University of Minnesota  Duluth"},{"name":"Department of Mathematics and Statistics University of Minnesota Duluth  Duluth"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8215-3665","authenticated-orcid":false,"given":"Jennifer O.","family":"Liang","sequence":"additional","affiliation":[{"name":"Department of Biology University of Minnesota Duluth  Duluth"},{"name":"Integrated Biosciences Graduate Program University of Minnesota  Duluth"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"311","published-online":{"date-parts":[[2018,3,10]]},"reference":[{"key":"e_1_2_7_2_1","doi-asserted-by":"publisher","DOI":"10.1051\/jbio\/1999193040347"},{"key":"e_1_2_7_3_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0960-9822(00)80016-0"},{"key":"e_1_2_7_4_1","doi-asserted-by":"publisher","DOI":"10.1186\/gb-2010-11-10-r106"},{"key":"e_1_2_7_5_1","volume-title":"Differential expression of RNA\u2010Seq data at the gene level\u2014The DESeq package","author":"Anders S.","year":"2012"},{"key":"e_1_2_7_6_1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-213X-7-126"},{"key":"e_1_2_7_7_1","doi-asserted-by":"publisher","DOI":"10.1186\/1749-8104-9-9"},{"key":"e_1_2_7_8_1","doi-asserted-by":"publisher","DOI":"10.1038\/ng768"},{"key":"e_1_2_7_9_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0024-3205(97)01060-6"},{"key":"e_1_2_7_10_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.2517-6161.1995.tb02031.x"},{"key":"e_1_2_7_11_1","doi-asserted-by":"publisher","DOI":"10.1007\/s11684-014-0308-4"},{"key":"e_1_2_7_12_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.ydbio.2004.03.032"},{"key":"e_1_2_7_13_1","doi-asserted-by":"publisher","DOI":"10.1101\/gad.9.6.686"},{"key":"e_1_2_7_14_1","doi-asserted-by":"publisher","DOI":"10.1038\/nature04375"},{"key":"e_1_2_7_15_1","doi-asserted-by":"publisher","DOI":"10.1002\/dvdy.1144"},{"key":"e_1_2_7_16_1","doi-asserted-by":"publisher","DOI":"10.1002\/path.2643"},{"key":"e_1_2_7_17_1","doi-asserted-by":"publisher","DOI":"10.1038\/nrg1181"},{"key":"e_1_2_7_18_1","doi-asserted-by":"publisher","DOI":"10.1016\/S1474-4422(13)70110-8"},{"key":"e_1_2_7_19_1","doi-asserted-by":"publisher","DOI":"10.1124\/mol.65.3.744"},{"key":"e_1_2_7_20_1","doi-asserted-by":"crossref","first-page":"3937","DOI":"10.1242\/dev.128.20.3937","article-title":"Cell autonomous commitment to an endodermal fate and behaviour by activation of Nodal signalling","volume":"128","author":"David N. 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