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In this study, we newly sequenced, assembled, and annotated the mitogenomes of three nationally protected Class II wild plants (\n                    <jats:italic>P. bournei<\/jats:italic>\n                    ,\n                    <jats:italic>P. chekiangensis<\/jats:italic>\n                    ,\n                    <jats:italic>P. zhennan<\/jats:italic>\n                    ) from China and compared their mitogenomic characteristics. The three assemblies were resolved into representative circular configurations ranging from 808 to 864\u2009kb, with similar GC contents and conserved protein\u2010coding capacity. Each mitogenome contained distinct 41 protein\u2010coding genes, 27\u201328 transfer RNAs, and three ribosomal RNAs. Synteny analysis revealed extensive changes in homologous\u2010block order and orientation despite substantial sequence homology among the three species. Abundant repeats occurred predominantly in noncoding regions, while plastid\u2010derived fragments documented historical intracellular DNA transfer. The three species exhibited similar codon usage and predicted RNA\u2010editing patterns, whereas low synonymous divergence limited inference from pairwise ratios. Phylogenetic analysis based on mitochondrial protein\u2010coding genes recovered\n                    <jats:italic>Phoebe<\/jats:italic>\n                    as a well\u2010supported monophyletic lineage. These results reveal substantial structural divergence accompanied by conserved nucleotide composition and coding capacity, providing valuable data for further understanding the evolutionary variation of plant mitogenomes of\n                    <jats:italic>Phoebe<\/jats:italic>\n                    and the Lauraceae.\n                  <\/jats:p>","DOI":"10.1002\/ece3.74281","type":"journal-article","created":{"date-parts":[[2026,9,4]],"date-time":"2026-09-04T11:10:33Z","timestamp":1788520233000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Exploring the Mitochondrial Genomes of\n                    <i>Phoebe<\/i>\n                    Species (Lauraceae): Structural Dynamics and Functional Conservation"],"prefix":"10.1002","volume":"16","author":[{"given":"Ting","family":"Zou","sequence":"first","affiliation":[{"name":"College of Life Sciences Guizhou University  Guiyang China"},{"name":"Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education) Guizhou University  Guiyang China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rong\u2010Rong","family":"Yan","sequence":"additional","affiliation":[{"name":"College of Life Sciences Guizhou University  Guiyang China"},{"name":"Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education) Guizhou University  Guiyang China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rong\u2010Hui","family":"Jiang","sequence":"additional","affiliation":[{"name":"Guizhou Academy of Forestry  Guiyang China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hai\u2010Jun","family":"Ma","sequence":"additional","affiliation":[{"name":"Institute of Botany Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. 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