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Using data from a randomized, placebo\u2010controlled trial of infant <jats:styled-content style=\"fixed-case\">CTX<\/jats:styled-content> prophylaxis, we sought to quantify emergence of antibiotic resistance.<\/jats:p><\/jats:sec><jats:sec><jats:title>Methods<\/jats:title><jats:p><jats:styled-content style=\"fixed-case\">HIV<\/jats:styled-content>\u2010exposed uninfected infants enrolled in the Botswana Mpepu study were randomized to prophylactic <jats:styled-content style=\"fixed-case\">CTX<\/jats:styled-content> or placebo between 14 and 34\u00a0days of life and continued through 15\u00a0months. Stool samples were collected from a subset of participating infants at randomization, three, and six months, and stored at \u221270\u00b0C prior to culture. Specimens that grew <jats:italic>Escherichia coli (E.\u00a0coli)<\/jats:italic> or <jats:italic>Klebsiella<\/jats:italic> species (<jats:italic>Klebsiella<\/jats:italic> spp.) underwent antibiotic susceptibility testing by Kirby Bauer method using <jats:styled-content style=\"fixed-case\">CTX<\/jats:styled-content> (<jats:styled-content style=\"fixed-case\">CTX<\/jats:styled-content> 1.25\/23.75\u00a0\u03bcg) and Amoxicillin (10\u00a0\u03bcg) in Mueller Hinton agar. Fisher's exact testing was used to compare prevalence of resistance by randomization arm (<jats:styled-content style=\"fixed-case\">CTX<\/jats:styled-content>\/placebo).<\/jats:p><\/jats:sec><jats:sec><jats:title>Results and Discussion<\/jats:title><jats:p>A total of 381 stool samples from 220 infants were cultured: 118 at randomization, 151 at three months, and 112 at six\u2010months. <jats:italic>E.\u00a0coli<\/jats:italic> was isolated from 206 specimens and <jats:italic>Klebsiella<\/jats:italic> spp. from 138 specimens. Resistance to <jats:styled-content style=\"fixed-case\">CTX<\/jats:styled-content> was common in both <jats:italic>E.\u00a0coli<\/jats:italic> and <jats:italic>Klebsiella<\/jats:italic> spp. at the randomization visit (52.2% and 37.7% respectively) and did not differ by study arm. <jats:italic>E.\u00a0Coli<\/jats:italic> isolates from <jats:styled-content style=\"fixed-case\">CTX<\/jats:styled-content> recipients at three and six months had 94.9% and 84.2% <jats:styled-content style=\"fixed-case\">CTX<\/jats:styled-content> resistance, as compared with 51.4% and 57.5% <jats:styled-content style=\"fixed-case\">CTX<\/jats:styled-content> resistance in isolates from placebo recipients (<jats:italic>p<\/jats:italic>=0.01). <jats:italic>Klebsiella<\/jats:italic> spp. isolates from <jats:styled-content style=\"fixed-case\">CTX<\/jats:styled-content> recipients had 79.0% and 68.8% <jats:styled-content style=\"fixed-case\">CTX<\/jats:styled-content> resistance at three and six months, as compared with 19.1% and 14.3% in isolates from placebo recipients (<jats:italic>p<\/jats:italic>&lt;0.01).<\/jats:p><\/jats:sec><jats:sec><jats:title>Conclusions<\/jats:title><jats:p><jats:styled-content style=\"fixed-case\">HIV<\/jats:styled-content>\u2010exposed infants randomized to <jats:styled-content style=\"fixed-case\">CTX<\/jats:styled-content> prophylaxis had increased <jats:styled-content style=\"fixed-case\">CTX<\/jats:styled-content>\u2010resistant commensal gastrointestinal bacteria compared with placebo recipients. Additional research is needed to determine the longer\u2010term clinical, microbiologic, and public health consequences of antimicrobial resistance selected by infant <jats:styled-content style=\"fixed-case\">CTX<\/jats:styled-content> prophylaxis.<\/jats:p><\/jats:sec>","DOI":"10.1002\/jia2.25021","type":"journal-article","created":{"date-parts":[[2017,12,1]],"date-time":"2017-12-01T17:40:56Z","timestamp":1512150056000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":20,"title":["Cotrimoxazole prophylaxis was associated with enteric commensal bacterial resistance among HIV\u2010exposed infants in a randomized controlled trial, Botswana"],"prefix":"10.1002","volume":"20","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4478-4471","authenticated-orcid":false,"given":"Kathleen M","family":"Powis","sequence":"first","affiliation":[{"name":"Massachusetts General Hospital Departments of Medicine and Pediatrics Boston MA United States"},{"name":"Department of Immunology and Infectious Diseases Harvard T. H. Chan School of Public Health Boston MA United States"},{"name":"Botswana\u2010Harvard AIDS Institute Partnership Gaborone Botswana"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sajini","family":"Souda","sequence":"additional","affiliation":[{"name":"Faculty of Medicine University of Botswana Gaborone Botswana"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shahin","family":"Lockman","sequence":"additional","affiliation":[{"name":"Department of Immunology and Infectious Diseases Harvard T. H. Chan School of Public Health Boston MA United States"},{"name":"Botswana\u2010Harvard AIDS Institute Partnership Gaborone Botswana"},{"name":"Brigham and Women's Hospital Infectious Disease Division Boston MA United States"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Gbolahan","family":"Ajibola","sequence":"additional","affiliation":[{"name":"Botswana\u2010Harvard AIDS Institute Partnership Gaborone Botswana"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kara","family":"Bennett","sequence":"additional","affiliation":[{"name":"Bennett Statistical Consulting, Inc. Ballston Lake NY United States"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jean","family":"Leidner","sequence":"additional","affiliation":[{"name":"Goodtables Data Consulting Norman OK United States"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Michael D","family":"Hughes","sequence":"additional","affiliation":[{"name":"Department of Biostatistics Harvard T. H. Chan School of Public Health Boston MA United States"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sikhulile","family":"Moyo","sequence":"additional","affiliation":[{"name":"Botswana\u2010Harvard AIDS Institute Partnership Gaborone Botswana"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Erik","family":"van Widenfelt","sequence":"additional","affiliation":[{"name":"Botswana\u2010Harvard AIDS Institute Partnership Gaborone Botswana"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Haruna B","family":"Jibril","sequence":"additional","affiliation":[{"name":"Ministry of Health Gaborone Botswana"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Joseph","family":"Makhema","sequence":"additional","affiliation":[{"name":"Botswana\u2010Harvard AIDS Institute Partnership Gaborone Botswana"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Max","family":"Essex","sequence":"additional","affiliation":[{"name":"Department of Immunology and Infectious Diseases Harvard T. H. Chan School of Public Health Boston MA United States"},{"name":"Botswana\u2010Harvard AIDS Institute Partnership Gaborone Botswana"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Roger L","family":"Shapiro","sequence":"additional","affiliation":[{"name":"Department of Immunology and Infectious Diseases Harvard T. H. Chan School of Public Health Boston MA United States"},{"name":"Botswana\u2010Harvard AIDS Institute Partnership Gaborone Botswana"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2017,11,9]]},"reference":[{"key":"e_1_2_10_2_1","unstructured":"World Health Organization.Guidelines on co\u2010trimoxazole prophylaxis for HIV\u2010related infections among children adolescents and adults \u2010 recommendations for a public health approach.2006[cited 2016 October 21]. 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