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Few studies have correlated environmental contamination and clinical infections in the same region. The aim of this study was to compare groups of <jats:italic>Giardia duodenalis<\/jats:italic> from clinical and environmental sources through population genetic analyses to verify haplotype sharing and the degree of genetic similarity among populations from clinical and environmental sources in the metropolitan region of Campinas. The results showed high diversity of haplotypes and substantial genetic similarity between clinical and environmental groups of <jats:italic>G.\u00a0duodenalis<\/jats:italic>. We demonstrated sharing of <jats:italic>Giardia<\/jats:italic> genotypes among the different populations studied. The comparison between veterinary and human sequences led us to identify new zoonotic genotypes, including human isolates from genetic assemblage C. The application of a population genetic analysis in epidemiological studies allows quantification of the degree of genetic similarity among populations of <jats:italic>Giardia duodenalis<\/jats:italic> from different sources of contamination. The genetic similarity of <jats:italic>Giardia<\/jats:italic> isolates among human, veterinary, and environmental groups reinforced the correlation between clinical and environmental isolates in this region, which is of great importance for public health.<\/jats:p>","DOI":"10.1002\/mbo3.424","type":"journal-article","created":{"date-parts":[[2017,1,11]],"date-time":"2017-01-11T05:08:42Z","timestamp":1484111322000},"source":"Crossref","is-referenced-by-count":11,"title":["Population genetic analysis of <i>Giardia duodenalis<\/i>: genetic diversity and haplotype sharing between clinical and environmental sources"],"prefix":"10.1002","volume":"6","author":[{"given":"Mauricio","family":"Durigan","sequence":"first","affiliation":[{"name":"Centro de Biologia Molecular e Engenharia Gen\u00e9tica (CBMEG) Universidade Estadual de Campinas (UNICAMP)  Campinas Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Maisa","family":"Ciampi\u2010Guillardi","sequence":"additional","affiliation":[{"name":"Departamento de Fitopatologia e Nematologia \u2013 ESALQ \u2013 Universidade de S\u00e3o Paulo  Piracicaba Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ricardo C. 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