{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,28]],"date-time":"2026-01-28T20:42:05Z","timestamp":1769632925561,"version":"3.49.0"},"reference-count":92,"publisher":"Wiley","issue":"6","license":[{"start":{"date-parts":[[2025,11,12]],"date-time":"2025-11-12T00:00:00Z","timestamp":1762905600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2025,11,12]],"date-time":"2025-11-12T00:00:00Z","timestamp":1762905600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/doi.wiley.com\/10.1002\/tdm_license_1.1"}],"content-domain":{"domain":["onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["MicrobiologyOpen"],"published-print":{"date-parts":[[2025,12]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n                  <jats:p>\n                    Antibiotic resistance is a global menace, particularly in low\u2010 and middle\u2010income countries where antimicrobial resistance (AMR) in zoonotic pathogens like\n                    <jats:italic>Salmonella<\/jats:italic>\n                    is on the rise. This study investigates the phenotypic and genotypic AMR in\n                    <jats:italic>Salmonella enterica<\/jats:italic>\n                    . isolated from cattle faeces collected by faecal grab method on a Nigerian dairy farm.\n                    <jats:italic>Salmonella enterica<\/jats:italic>\n                    was cultured from the faecal samples of 138 individual cattle at the University of Ibadan dairy farm, with identification done through MALDI\u2010TOF\u2010MS, genus\u2010specific PCR, and Microbact 24E. The minimum inhibitory concentration (MIC) of selected antibiotics was determined by Vitek 2 compact system. Whole genome sequencing was conducted on eighteen isolates that met pre\u2010sequencing quality standards, utilizing the Illumina HiSeq platform. Sequence types and AMR genes were determined using publicly available tools. Interestingly, all isolates showed 100% phenotypic susceptibility to the tested antibiotics. Notably, several rare\n                    <jats:italic>Salmonella enterica<\/jats:italic>\n                    serovars were identified among the sequenced strains; Koketime (\n                    <jats:italic>n<\/jats:italic>\n                    \u2009=\u20092), Hadar (\n                    <jats:italic>n<\/jats:italic>\n                    \u2009=\u20093), Banalia|Tounouma (\n                    <jats:italic>n<\/jats:italic>\n                    \u2009=\u200910), Hermannswerder (\n                    <jats:italic>n<\/jats:italic>\n                    \u2009=\u20092), and Chomedey|Glostrup (\n                    <jats:italic>n<\/jats:italic>\n                    \u2009=\u20091). While most of the sequenced\n                    <jats:italic>Salmonella enterica<\/jats:italic>\n                    strains (15 out of 18) lacked AMR genes besides efflux transporter gene, a strain of Chomedey|Glostrup serovar exhibited genes associated with reduced susceptibility to aminoglycosides (\n                    <jats:italic>aph(3\u2032)\u2010lb<\/jats:italic>\n                    , aph(6)\u2010Id), quinolones (\n                    <jats:italic>qnrB<\/jats:italic>\n                    ), sulphonamides (\n                    <jats:italic>sul2<\/jats:italic>\n                    ), and tetracycline (\n                    <jats:italic>tet(A)<\/jats:italic>\n                    ), while Koketime strains possessed fosfomycin resistance genes (\n                    <jats:italic>fosA7<\/jats:italic>\n                    ) besides the efflux genes. The absence of phenotypic and genotypic AMR in most of the isolates highlights the possibility that AMR could be controlled in livestocks in developing countries.\n                  <\/jats:p>","DOI":"10.1002\/mbo3.70129","type":"journal-article","created":{"date-parts":[[2025,11,12]],"date-time":"2025-11-12T11:21:31Z","timestamp":1762946491000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Assessing the Genomic Landscape of\n                    <i>Salmonella enterica<\/i>\n                    Isolated From Cattle Faeces on a Nigerian Farm"],"prefix":"10.1002","volume":"14","author":[{"given":"Adewale A.","family":"Adetoye","sequence":"first","affiliation":[{"name":"Department of Pharmaceutical Microbiology, Faculty of Pharmacy University of Ibadan Ibadan Oyo Nigeria"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1405-2365","authenticated-orcid":false,"given":"Ayorinde O.","family":"Afolayan","sequence":"additional","affiliation":[{"name":"Institute for Infection Prevention and Control Medical Center\u2014University of Freiburg Freiburg Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8510-7189","authenticated-orcid":false,"given":"Olabisi C.","family":"Akinlabi","sequence":"additional","affiliation":[{"name":"Department of Medical Microbiology and Infectious Diseases University of Manitoba Winnipeg Manitoba Canada"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Stella E.","family":"Ekpo","sequence":"additional","affiliation":[{"name":"Department of Pharmaceutical Microbiology, Faculty of Pharmacy University of Ibadan Ibadan Oyo Nigeria"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Isaac O.","family":"Olatoye","sequence":"additional","affiliation":[{"name":"Department of Veterinary Public Health and Preventive Medicine, Faculty of Veterinary Medicine University of Ibadan Ibadan Oyo Nigeria"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0009-0005-4333-6174","authenticated-orcid":false,"given":"Funmilola A.","family":"Ayeni","sequence":"additional","affiliation":[{"name":"Department of Environmental and Occupational Health, School of Public Health Indiana University Bloomington Indiana USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"311","published-online":{"date-parts":[[2025,11,12]]},"reference":[{"key":"e_1_2_10_2_1","doi-asserted-by":"publisher","DOI":"10.1038\/486465a"},{"key":"e_1_2_10_3_1","doi-asserted-by":"publisher","DOI":"10.3201\/eid1305.061489"},{"key":"e_1_2_10_4_1","doi-asserted-by":"publisher","DOI":"10.4102\/ojvr.v82i1.816"},{"key":"e_1_2_10_5_1","doi-asserted-by":"publisher","DOI":"10.1186\/s12866-018-1248-y"},{"key":"e_1_2_10_6_1","doi-asserted-by":"publisher","DOI":"10.7717\/peerj.5053"},{"key":"e_1_2_10_7_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.onehlt.2018.11.001"},{"key":"e_1_2_10_8_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pgen.1007261"},{"key":"e_1_2_10_9_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1574-6976.2011.00289.x"},{"key":"e_1_2_10_10_1","doi-asserted-by":"publisher","DOI":"10.1186\/s41182-017-0043-z"},{"key":"e_1_2_10_11_1","doi-asserted-by":"publisher","DOI":"10.3201\/eid2106.140999"},{"key":"e_1_2_10_12_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.onehlt.2023.100647"},{"key":"e_1_2_10_13_1","doi-asserted-by":"publisher","DOI":"10.1155\/2023\/6837797"},{"key":"e_1_2_10_14_1","doi-asserted-by":"publisher","DOI":"10.1017\/S0043933914000579"},{"key":"e_1_2_10_15_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0296971"},{"key":"e_1_2_10_16_1","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2023.1284929"},{"key":"e_1_2_10_17_1","doi-asserted-by":"publisher","DOI":"10.3390\/zoonoticdis5010004"},{"key":"e_1_2_10_18_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijfoodmicro.2024.110785"},{"key":"e_1_2_10_19_1","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.1503141112"},{"issue":"1","key":"e_1_2_10_20_1","first-page":"232","article-title":"Global Trends in Antimicrobial use in Food Animals","volume":"116","author":"Van Boeckel T. P.","year":"2019","journal-title":"Proceedings of the National Academy of Sciences"},{"key":"e_1_2_10_21_1","doi-asserted-by":"publisher","DOI":"10.1017\/S0950268824000682"},{"key":"e_1_2_10_22_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.0007917"},{"key":"e_1_2_10_23_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.cvex.2018.01.014"},{"issue":"6","key":"e_1_2_10_24_1","first-page":"230","article-title":"Antibiotic Resistance Is the Quintessential One Health Issue","volume":"112","author":"Bu D. P.","year":"2018","journal-title":"Transactions of the Royal Society of Tropical Medicine and Hygiene"},{"key":"e_1_2_10_25_1","doi-asserted-by":"publisher","DOI":"10.1533\/9780857090621.2.144"},{"key":"e_1_2_10_26_1","doi-asserted-by":"publisher","DOI":"10.3390\/antibiotics12030487"},{"key":"e_1_2_10_27_1","doi-asserted-by":"publisher","DOI":"10.3390\/ani11102878"},{"key":"e_1_2_10_28_1","doi-asserted-by":"publisher","DOI":"10.1007\/s42770-019-00151-w"},{"key":"e_1_2_10_29_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41598-021-86243-w"},{"key":"e_1_2_10_30_1","doi-asserted-by":"publisher","DOI":"10.1016\/B978-012373944-5.00213-3"},{"key":"e_1_2_10_31_1","doi-asserted-by":"publisher","DOI":"10.3168\/jds.2009-2093"},{"key":"e_1_2_10_32_1","doi-asserted-by":"publisher","DOI":"10.1111\/jam.15738"},{"key":"e_1_2_10_33_1","doi-asserted-by":"publisher","DOI":"10.2903\/j.efsa.2021.6651"},{"key":"e_1_2_10_34_1","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms11020347"},{"key":"e_1_2_10_35_1","doi-asserted-by":"publisher","DOI":"10.1155\/2016\/4290506"},{"key":"e_1_2_10_36_1","doi-asserted-by":"publisher","DOI":"10.3390\/vaccines10111881"},{"key":"e_1_2_10_37_1","doi-asserted-by":"publisher","DOI":"10.1128\/IAI.00874-13"},{"key":"e_1_2_10_38_1","doi-asserted-by":"publisher","DOI":"10.54203\/scil.2023.wvj4"},{"key":"e_1_2_10_39_1","doi-asserted-by":"publisher","DOI":"10.2903\/j.efsa.2017.4666"},{"key":"e_1_2_10_40_1","doi-asserted-by":"publisher","DOI":"10.1080\/21553769.2015.1051243"},{"key":"e_1_2_10_41_1","doi-asserted-by":"publisher","DOI":"10.3390\/ani13233666"},{"key":"e_1_2_10_42_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.micpath.2020.104352"},{"key":"e_1_2_10_43_1","doi-asserted-by":"publisher","DOI":"10.3389\/fvets.2019.00102"},{"key":"e_1_2_10_44_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.fm.2023.104237"},{"key":"e_1_2_10_45_1","doi-asserted-by":"publisher","DOI":"10.1017\/S0950268815002241"},{"key":"e_1_2_10_46_1","doi-asserted-by":"publisher","DOI":"10.3389\/fpubh.2023.1127925"},{"key":"e_1_2_10_47_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.cvfa.2017.10.005"},{"key":"e_1_2_10_48_1","doi-asserted-by":"publisher","DOI":"10.3390\/vetsci10020067"},{"key":"e_1_2_10_49_1","doi-asserted-by":"publisher","DOI":"10.14202\/vetworld.2021.210-221"},{"key":"e_1_2_10_50_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pntd.001071"},{"key":"e_1_2_10_51_1","doi-asserted-by":"publisher","DOI":"10.1089\/fpd.2019.29011.edi"},{"key":"e_1_2_10_52_1","doi-asserted-by":"publisher","DOI":"10.3390\/antibiotics10020099"},{"key":"e_1_2_10_53_1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-5-86"},{"key":"e_1_2_10_54_1","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-11-595"},{"key":"e_1_2_10_55_1","doi-asserted-by":"publisher","DOI":"10.3947\/ic.2014.46.4.226"},{"key":"e_1_2_10_56_1","doi-asserted-by":"publisher","DOI":"10.2903\/j.efsa.2021.6651"},{"key":"e_1_2_10_57_1","doi-asserted-by":"publisher","DOI":"10.3390\/antibiotics13010076"},{"key":"e_1_2_10_58_1","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.02228-08"},{"key":"e_1_2_10_59_1","doi-asserted-by":"publisher","DOI":"10.12980\/jclm.5.2017J7-46"},{"key":"e_1_2_10_60_1","doi-asserted-by":"publisher","DOI":"10.1086\/650733"},{"key":"e_1_2_10_61_1","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2020.562181"},{"key":"e_1_2_10_62_1","doi-asserted-by":"publisher","DOI":"10.1007\/s42770-021-00635-8"},{"key":"e_1_2_10_63_1","doi-asserted-by":"publisher","DOI":"10.1155\/2023\/8899596"},{"key":"e_1_2_10_64_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.fm.2020.103601"},{"key":"e_1_2_10_65_1","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms12040669"},{"key":"e_1_2_10_66_1","doi-asserted-by":"publisher","DOI":"10.3390\/foods7100167"},{"key":"e_1_2_10_67_1","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-025-10478-5"},{"key":"e_1_2_10_68_1","doi-asserted-by":"publisher","DOI":"10.1128\/aem.00033-23"},{"key":"e_1_2_10_69_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2885.1996.tb00054.x"},{"key":"e_1_2_10_70_1","doi-asserted-by":"publisher","DOI":"10.1186\/s40249-023-01113-z"},{"key":"e_1_2_10_71_1","doi-asserted-by":"publisher","DOI":"10.30466\/vrf.2022.544308.3312"},{"key":"e_1_2_10_72_1","doi-asserted-by":"publisher","DOI":"10.1373\/clinchem.2014.221770"},{"key":"e_1_2_10_73_1","doi-asserted-by":"publisher","DOI":"10.1542\/peds.2015-3630"},{"key":"e_1_2_10_74_1","volume-title":"Diseases of Dairy Cattle","author":"Peek S. F.","year":"2017"},{"key":"e_1_2_10_75_1","doi-asserted-by":"publisher","DOI":"10.2527\/1991.6972947x"},{"key":"e_1_2_10_76_1","doi-asserted-by":"publisher","DOI":"10.1179\/2047773215Y.0000000030"},{"key":"e_1_2_10_77_1","doi-asserted-by":"publisher","DOI":"10.3390\/microorganisms8091405"},{"key":"e_1_2_10_78_1","doi-asserted-by":"publisher","DOI":"10.3389\/fcimb.2020.572912"},{"key":"e_1_2_10_79_1","doi-asserted-by":"publisher","DOI":"10.3390\/healthcare11131946"},{"key":"e_1_2_10_80_1","doi-asserted-by":"publisher","DOI":"10.1099\/mgen.0.000685"},{"key":"e_1_2_10_81_1","doi-asserted-by":"publisher","DOI":"10.1007\/s44351-025-00030-w"},{"key":"e_1_2_10_82_1","doi-asserted-by":"publisher","DOI":"10.2217\/fmb.10.127"},{"key":"e_1_2_10_83_1","doi-asserted-by":"publisher","DOI":"10.5455\/vetworld.2011.562-564"},{"key":"e_1_2_10_84_1","volume-title":"World Livestock 2013 Changing Disease landscapes","author":"Slingenbergh J.","year":"2013"},{"key":"e_1_2_10_85_1","doi-asserted-by":"publisher","DOI":"10.1007\/s44197-023-00160-x"},{"key":"e_1_2_10_86_1","doi-asserted-by":"publisher","DOI":"10.3390\/foods12091756"},{"key":"e_1_2_10_87_1","doi-asserted-by":"publisher","DOI":"10.4315\/0362-028X.JFP-19-302"},{"key":"e_1_2_10_88_1","doi-asserted-by":"publisher","DOI":"10.4236\/ojmm.2014.44027"},{"key":"e_1_2_10_89_1","doi-asserted-by":"crossref","unstructured":"Underwood A.2020. GHRU (Genomic Surveillance of Antimicrobial Resistance) Retrospective 1 Bioinformatics Methods v.4.https:\/\/www.protocols.io\/view\/ghru-genomic-surveillance-of-antimicrobial-resista-bpn6mmhe.","DOI":"10.17504\/protocols.io.bp2l6b11kgqe\/v4"},{"key":"e_1_2_10_90_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41467-025-59758-3"},{"key":"e_1_2_10_91_1","unstructured":"World Health Organization.2020. \u201cAntimicrobial Resistance.\u201dhttps:\/\/www.who.int\/news-room\/fact-sheets\/detail\/antimicrobial-resistance."},{"key":"e_1_2_10_92_1","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.00138-20"},{"key":"e_1_2_10_93_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0147101"}],"container-title":["MicrobiologyOpen"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1002\/mbo3.70129","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/full-xml\/10.1002\/mbo3.70129","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1002\/mbo3.70129","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,1,28]],"date-time":"2026-01-28T08:58:35Z","timestamp":1769590715000},"score":1,"resource":{"primary":{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/10.1002\/mbo3.70129"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,11,12]]},"references-count":92,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2025,12]]}},"alternative-id":["10.1002\/mbo3.70129"],"URL":"https:\/\/doi.org\/10.1002\/mbo3.70129","archive":["Portico"],"relation":{},"ISSN":["2045-8827","2045-8827"],"issn-type":[{"value":"2045-8827","type":"print"},{"value":"2045-8827","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,11,12]]},"assertion":[{"value":"2025-06-04","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2025-10-27","order":2,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2025-11-12","order":3,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e70129"}}