{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,29]],"date-time":"2026-09-29T04:58:27Z","timestamp":1790657907424,"version":"4.1.0"},"reference-count":166,"publisher":"Wiley","issue":"5","license":[{"start":{"date-parts":[[2026,9,28]],"date-time":"2026-09-28T00:00:00Z","timestamp":1790553600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2026,9,28]],"date-time":"2026-09-28T00:00:00Z","timestamp":1790553600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/doi.wiley.com\/10.1002\/tdm_license_1.1"}],"content-domain":{"domain":["onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["MicrobiologyOpen"],"published-print":{"date-parts":[[2026,10]]},"abstract":"<jats:title>ABSTRACT<\/jats:title>\n                  <jats:p>The increasing limitations of chemical pesticides such as environmental pollution, pathogen resistance, and threats to human and ecosystem health have increased the demand for sustainable, biologically based crop protection methods. Eco\u2010smart biocontrol has emerged as a game\u2010changing paradigm that uses beneficial microorganisms associated with plants to suppress phytopathogens, boost plant immunity, and make agroecosystems more resilient over time. Moving beyond traditional single\u2010strain biocontrol, eco\u2010smart biocontrol integrates multi\u2010omics discovery, artificial intelligence\u2010assisted predictive microbiome design, and dynamic rhizosphere ecology. This review brings together ecological, molecular, and technological dimensions of eco\u2010smart biocontrol, focusing on the rhizosphere as a dynamic hotspot for plant\u2013microbe interactions. We investigate rhizosphere microbiome assembly and demonstrate the preferential recruitment of beneficial bacteria, fungi, actinomycetes, and mycorrhizal symbionts by plant root exudates. Moreover, the review highlights the impact of innovations in multi\u2010omics techniques (metagenomics, transcriptomics, proteomics, and metabolomics), systems biology, and artificial intelligence on microbial biocontrol agent discovery, functional validation, and predictive design. Examples from cereal crops, legumes, and horticulture crops indicate that the application of beneficial microbial inoculants can significantly lower the burden of pests and diseases, enhance crop productivity, and fit perfectly within an integrated pest management system. Lastly, we critically analyze the main challenges preventing large\u2010scale adoption, such as inconsistent field performance, limited microbial survival and competitiveness, and comparative regulatory frameworks across global markets. Ultimately, eco\u2010smart microbial biocontrol combines mechanistic insights with omics\u2010driven discovery, artificial intelligence (AI)\u2010 assisted prediction, advanced formulation strategies, and field\u2010level validation, creating a strong, scalable, and environmentally friendly framework for resilient, low\u2010input agricultural systems.<\/jats:p>","DOI":"10.1002\/mbo3.70398","type":"journal-article","created":{"date-parts":[[2026,9,29]],"date-time":"2026-09-29T04:32:47Z","timestamp":1790656367000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["From Rhizosphere to Resistance: Microbe\u2010Plant Interactions in Eco\u2010Smart Biocontrol"],"prefix":"10.1002","volume":"15","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-2274-9090","authenticated-orcid":false,"given":"Shilpy","family":"Singh","sequence":"first","affiliation":[{"name":"Department of Biotechnology and Microbiology, School of Sciences Noida International University Greater Noida Uttar Pradesh India"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8575-6939","authenticated-orcid":false,"given":"Varun Kumar","family":"Sharma","sequence":"additional","affiliation":[{"name":"Department of Biotechnology and Microbiology, School of Sciences Noida International University Greater Noida Uttar Pradesh India"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2022-3290","authenticated-orcid":false,"given":"Dharmsheel","family":"Shrivastav","sequence":"additional","affiliation":[{"name":"Department of Biotechnology and Microbiology, School of Sciences Noida International University Greater Noida Uttar Pradesh India"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0000-8320-9034","authenticated-orcid":false,"given":"Jayant M.","family":"Kushwaha","sequence":"additional","affiliation":[{"name":"Department of Biotechnology and Microbiology, School of Sciences Noida International University Greater Noida Uttar Pradesh India"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7836-6254","authenticated-orcid":false,"given":"Manoj Kumar","family":"Mishra","sequence":"additional","affiliation":[{"name":"Department of Biotechnology SR Institute of Management &amp; Technology Lucknow Uttar Pradesh India"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4519-721X","authenticated-orcid":false,"given":"Mirza Masroor Ali","family":"Beg","sequence":"additional","affiliation":[{"name":"Faculty of Medicine Ala\u2010Too International University Bishkek Kyrgyzstan"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2026,9,28]]},"reference":[{"key":"e_1_2_19_2_1","doi-asserted-by":"crossref","first-page":"163","DOI":"10.3390\/plants13020163","article-title":"Mechanisms of Plant Epigenetic Regulation in Response to Plant Stress: Recent Discoveries and Implications","volume":"13","author":"Abdulraheem M. I.","year":"2024","journal-title":"Plants"},{"issue":"11","key":"e_1_2_19_3_1","doi-asserted-by":"crossref","first-page":"1310","DOI":"10.1016\/j.tplants.2023.06.001","article-title":"Dynamic Interplay Between Nano\u2010Enabled Agrochemicals and the Plant\u2010Associated Microbiome","volume":"28","author":"Ahmed T.","year":"2023","journal-title":"Trends in Plant Science"},{"key":"e_1_2_19_4_1","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.jare.2023.11.028","article-title":"Effects of Microbial Agent and Microbial Fertilizer Input on Soil Microbial Community Structure and Diversity in a Peanut Continuous Cropping System","volume":"64","author":"Ahsan T.","year":"2024","journal-title":"Journal of Advanced Research"},{"key":"e_1_2_19_5_1","doi-asserted-by":"crossref","DOI":"10.1016\/j.heliyon.2022.e12609","article-title":"Liquid Biofertilizers as a Sustainable Solution for Agriculture","volume":"8","author":"Allouzi M. M. A.","year":"2022","journal-title":"Heliyon"},{"key":"e_1_2_19_6_1","doi-asserted-by":"crossref","first-page":"768","DOI":"10.3390\/agriculture14050768","article-title":"The Effect of Combined Application of Biocontrol Microorganisms and Arbuscular Mycorrhizal Fungi on Plant Growth and Yield of Tomato (Solanum lycopersicum L.)","volume":"14","author":"Almuslimawi A. A. A.","year":"2024","journal-title":"Agriculture"},{"key":"e_1_2_19_7_1","doi-asserted-by":"crossref","first-page":"6525","DOI":"10.1039\/D5CS00458F","article-title":"Turning Over a New Leaf: Innovative Pest Control From a Materials Science Perspective","volume":"54","author":"Arunachalam A.","year":"2025","journal-title":"Chemical Society Reviews"},{"key":"e_1_2_19_8_1","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-025-09843-w","article-title":"Effects of Soil Texture on Microbial Community Composition and Abundance Under Alternate Wetting and Drying in Paddy Soils of Central Thailand","volume":"15","author":"Arunrat N.","year":"2025","journal-title":"Scientific Reports"},{"key":"e_1_2_19_9_1","doi-asserted-by":"crossref","first-page":"1","DOI":"10.36615\/2ar4w994","article-title":"AI\u2010Powered Decision Support Systems for Sustainable Agriculture Using AI\u2010Chatbot Solution","volume":"5","author":"Asolo E.","year":"2024","journal-title":"Journal of Digital Food, Energy & Water Systems"},{"key":"e_1_2_19_10_1","doi-asserted-by":"crossref","DOI":"10.1098\/rsob.240318","article-title":"Beyond Pathogenicity: The Immunomodulatory Role of the Type III Secretion System in Beneficial Plant\u2013Microbe Interactions","volume":"15","author":"Atanaskovi\u0107 I.","year":"2025","journal-title":"Open Biology"},{"key":"e_1_2_19_11_1","doi-asserted-by":"crossref","first-page":"6735","DOI":"10.3390\/molecules28186735","article-title":"Bacterial and Fungal Biocontrol Agents for Plant Disease Protection: Journey From Lab to Field, Current Status, Challenges, and Global Perspectives","volume":"28","author":"Ayaz M.","year":"2023","journal-title":"Molecules"},{"key":"e_1_2_19_12_1","doi-asserted-by":"crossref","first-page":"230","DOI":"10.1111\/jipb.13226","article-title":"The Root Microbiome: Community Assembly and Its Contributions to Plant Fitness","volume":"64","author":"Bai B.","year":"2022","journal-title":"Journal of Integrative Plant Biology"},{"issue":"18","key":"e_1_2_19_13_1","doi-asserted-by":"crossref","first-page":"9020","DOI":"10.3390\/app12189020","article-title":"Recent Advances in Encapsulation Techniques of Plant Growth\u2010Promoting Microorganisms and Their Prospects in the Sustainable Agriculture","volume":"12","author":"Balla A.","year":"2022","journal-title":"Applied Sciences"},{"key":"e_1_2_19_14_1","doi-asserted-by":"crossref","first-page":"180","DOI":"10.3390\/antibiotics15020180","article-title":"A Century\u2010Old Solution for 21st Century Challenges: Current Applications With a Focus on Biocontrol, Environmental Impacts, and Regulatory Perspectives","volume":"15","author":"Baud A.","year":"2026","journal-title":"Antibiotics"},{"key":"e_1_2_19_15_1","doi-asserted-by":"crossref","first-page":"269","DOI":"10.1007\/s10123-026-00790-8","article-title":"Microbial Biotechnology Meets Ecological Theory: A Unified Framework to Design Industrial Microbial Consortia","volume":"29","author":"Belda I.","year":"2026","journal-title":"International Microbiology"},{"key":"e_1_2_19_16_1","doi-asserted-by":"crossref","first-page":"165","DOI":"10.1007\/s00203-023-03502-2","article-title":"\u2018A Plant's Major Strength in Rhizosphere\u2019: The Plant Growth Promoting Rhizobacteria","volume":"205","author":"Bhadrecha P.","year":"2023","journal-title":"Archives of Microbiology"},{"issue":"9","key":"e_1_2_19_17_1","doi-asserted-by":"crossref","first-page":"1759","DOI":"10.3390\/microorganisms10091759","article-title":"Bacteria as Biological Control Agents of Plant Diseases","volume":"10","author":"Bonaterra A.","year":"2022","journal-title":"Microorganisms"},{"key":"e_1_2_19_18_1","doi-asserted-by":"crossref","first-page":"58","DOI":"10.1016\/j.mib.2018.02.003","article-title":"Cross\u2010Kingdom RNA Trafficking and Environmental RNAi\u2014Nature's Blueprint for Modern Crop Protection Strategies","volume":"46","author":"Cai Q.","year":"2018","journal-title":"Current Opinion in Microbiology"},{"key":"e_1_2_19_19_1","doi-asserted-by":"crossref","first-page":"2207","DOI":"10.3390\/plants12112207","article-title":"Biofilm\u2010Forming Ability of Phytopathogenic Bacteria: A Review of Its Involvement in Plant Stress","volume":"12","author":"Carezzano M. E.","year":"2023","journal-title":"Plants"},{"key":"e_1_2_19_20_1","doi-asserted-by":"publisher","DOI":"10.1002\/FES3.108;JOURNAL:JOURNAL:20483694;WGROUP:STRING:PUBLICATION"},{"key":"e_1_2_19_21_1","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2025.1660944","article-title":"Microbial\u2010Mediated Induced Resistance: Interactive Effects for Improving Crop Health","volume":"16","author":"Charpe A. M.","year":"2025","journal-title":"Frontiers in Microbiology"},{"key":"e_1_2_19_22_1","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2022.933017","article-title":"Endophytes and Their Potential in Biotic Stress Management and Crop Production","volume":"13","author":"Chaudhary P.","year":"2022","journal-title":"Frontiers in Microbiology"},{"key":"e_1_2_19_23_1","doi-asserted-by":"crossref","first-page":"135","DOI":"10.1016\/j.copbio.2021.07.003","article-title":"The Plant Microbiota: Composition, Functions, and Engineering","volume":"73","author":"Chialva M.","year":"2022","journal-title":"Current Opinion in Biotechnology"},{"key":"e_1_2_19_24_1","doi-asserted-by":"crossref","DOI":"10.3390\/ijms232415561","article-title":"Genetic Determinants of Antagonistic Interactions and the Response of New Endophytic Strain Serratia Quinivorans KP32 to Fungal Phytopathogens","volume":"23","author":"Chlebek D.","year":"2022","journal-title":"International Journal of Molecular Sciences"},{"key":"e_1_2_19_25_1","doi-asserted-by":"crossref","DOI":"10.7717\/peerj.17835","article-title":"Trichoderma\u2010Based Formulations Control the Wilt Disease of Chickpea (Cicer arietinum L.) Caused by Fusarium oxysporum f. sp. ciceris, Better When Inoculated as Consortia: Findings From Pot Experiments under Field Conditions","volume":"12","author":"Chohan S. A.","year":"2024","journal-title":"PeerJ"},{"key":"e_1_2_19_26_1","doi-asserted-by":"crossref","first-page":"1812","DOI":"10.1111\/1462-2920.15240","article-title":"The Plant Endosphere World \u2013 Bacterial Life Within Plants","volume":"23","author":"Compant S.","year":"2021","journal-title":"Environmental Microbiology"},{"key":"e_1_2_19_27_1","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1038\/s41579-024-01079-1","article-title":"Harnessing the Plant Microbiome for Sustainable Crop Production","volume":"23","author":"Compant S.","year":"2024","journal-title":"Nature Reviews Microbiology"},{"key":"e_1_2_19_28_1","doi-asserted-by":"crossref","first-page":"150","DOI":"10.1111\/ppa.13467","article-title":"Fungicide Resistance Management: Maximizing the Effective Life of Plant Protection Products","volume":"71","author":"Corkley I.","year":"2022","journal-title":"Plant Pathology"},{"key":"e_1_2_19_29_1","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0237975","article-title":"A Multi\u2010Omics Approach to Solving Problems in Plant Disease Ecology","volume":"15","author":"Crandall S. G.","year":"2020","journal-title":"PLoS One"},{"key":"e_1_2_19_30_1","doi-asserted-by":"crossref","DOI":"10.1016\/j.heliyon.2020.e05222","article-title":"Development of a Novel Biological Control Agent Targeting the Phytopathogen Erwinia Amylovora","volume":"6","author":"Dagher F.","year":"2020","journal-title":"Heliyon"},{"key":"e_1_2_19_31_1","doi-asserted-by":"crossref","first-page":"1281","DOI":"10.3390\/microorganisms12071281","article-title":"Arbuscular Mycorrhizal Fungi as Biostimulant and Biocontrol Agents: A Review","volume":"12","author":"Delaeter M.","year":"2024","journal-title":"Microorganisms"},{"issue":"1","key":"e_1_2_19_32_1","doi-asserted-by":"crossref","first-page":"219","DOI":"10.1186\/s40168-022-01405-w","article-title":"The Global Distribution and Environmental Drivers of the Soil Antibiotic Resistome","volume":"10","author":"Delgado\u2010Baquerizo M.","year":"2022","journal-title":"Microbiome"},{"key":"e_1_2_19_33_1","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2025.1704615","article-title":"Calcium\u2010Dependent Protein Kinases in Plant Immunity: From Calcium Signaling to Network Integration","volume":"16","author":"Deng L.","year":"2026","journal-title":"Frontiers in Plant Science"},{"key":"e_1_2_19_34_1","first-page":"39","volume-title":"Functional Genetics of Trichoderma mycoparasitism","author":"Dou K.","year":"2022"},{"key":"e_1_2_19_35_1","doi-asserted-by":"crossref","first-page":"wraf023","DOI":"10.1093\/ismejo\/wraf023","article-title":"Mechanisms of Cooperation in the Plants\u2013Arbuscular Mycorrhizal Fungi\u2013Bacteria Continuum","volume":"19","author":"Duan S.","year":"2025","journal-title":"ISME Journal"},{"key":"e_1_2_19_36_1","doi-asserted-by":"crossref","first-page":"2791","DOI":"10.3389\/fmicb.2019.02791","article-title":"Salt\u2010Tolerant Plant Growth\u2010Promoting Rhizobacteria for Enhancing Crop Productivity of Saline Soils","volume":"10","author":"Egamberdieva D.","year":"2019","journal-title":"Frontiers in Microbiology"},{"issue":"4","key":"e_1_2_19_37_1","doi-asserted-by":"crossref","first-page":"759","DOI":"10.1007\/s10658-021-02393-7","article-title":"The Use of Microbial Inoculants for Biological Control, Plant Growth Promotion, and Sustainable Agriculture: A Review","volume":"162","author":"Elnahal A. S. M.","year":"2022","journal-title":"European Journal of Plant Pathology"},{"key":"e_1_2_19_38_1","doi-asserted-by":"crossref","DOI":"10.1128\/MRA.00557-21","article-title":"Reconstruction of Metagenome\u2010Assembled Genomes From Aquaria","volume":"10","author":"Ettinger C. L.","year":"2021","journal-title":"Microbiology Resource Announcements"},{"key":"e_1_2_19_39_1","doi-asserted-by":"crossref","first-page":"2546","DOI":"10.3390\/microorganisms13112546","article-title":"Key Challenges in Plant Microbiome Research in the Next Decade","volume":"13","author":"Fadiji A. E.","year":"2025","journal-title":"Microorganisms"},{"key":"e_1_2_19_40_1","doi-asserted-by":"crossref","DOI":"10.1016\/j.mimet.2020.105860","article-title":"Metagenomics Methods for the Study of Plant\u2010Associated Microbial Communities: A Review","volume":"170","author":"Fadiji A. E.","year":"2020","journal-title":"Journal of Microbiological Methods"},{"key":"e_1_2_19_41_1","doi-asserted-by":"crossref","DOI":"10.3389\/fsufs.2025.1657000","article-title":"Biopesticides for Sustainable Agriculture: Feasible Options for Adopting Cost\u2010Effective Strategies","volume":"9","author":"Fenibo E. O.","year":"2025","journal-title":"Frontiers in Sustainable Food Systems"},{"key":"e_1_2_19_42_1","doi-asserted-by":"crossref","DOI":"10.3389\/fbioe.2025.1609110","article-title":"Regulatory Challenges and Global Trade Implications of Genome Editing in Agriculture","volume":"13","author":"Fern\u00e1ndez R\u00edos D.","year":"2025","journal-title":"Frontiers in Bioengineering and Biotechnology"},{"key":"e_1_2_19_43_1","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1146\/annurev-micro-022620-014327","article-title":"The Plant Microbiome: From Ecology to Reductionism and Beyond","volume":"74","author":"Fitzpatrick C. R.","year":"2020","journal-title":"Annual Review of Microbiology"},{"key":"e_1_2_19_44_1","doi-asserted-by":"crossref","first-page":"570","DOI":"10.3390\/pathogens10050570","article-title":"Endophytic Fungi: Biological Control and Induced Resistance to Phytopathogens and Abiotic Stresses","volume":"10","author":"Fontana D. C.","year":"2021","journal-title":"Pathogens"},{"key":"e_1_2_19_45_1","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1007\/s00248-026-02709-2","article-title":"Multifunctional Roles of Bacillus spp. in Sustainable Agriculture: Advances in Biocontrol, Omics, and Ecological Applications","volume":"89","author":"Gayithri M.","year":"2026","journal-title":"Microbial Ecology"},{"key":"e_1_2_19_46_1","first-page":"109","volume-title":"Nature's Protectors: A Biofilm Perspective on Bacterial Disease Control in Plants","author":"G\u00f3mez\u2010P\u00e9rez D.","year":"2024"},{"key":"e_1_2_19_47_1","doi-asserted-by":"crossref","DOI":"10.1128\/mbio.02733-23","article-title":"Assemblages of Rhizospheric and Root Endospheric Mycobiota and Their Ecological Associations With Functional Traits of Rice","volume":"15","author":"Guo J.","year":"2024","journal-title":"mBio"},{"key":"e_1_2_19_48_1","doi-asserted-by":"crossref","first-page":"175","DOI":"10.1042\/ETLS20210262","article-title":"Metabolomics as an Emerging Tool to Study Plant\u2013Microbe Interactions","volume":"6","author":"Gupta S.","year":"2022","journal-title":"Emerging Topics in Life Sciences"},{"key":"e_1_2_19_49_1","doi-asserted-by":"crossref","first-page":"432","DOI":"10.3390\/plants12030432","article-title":"Trichoderma Species: Our Best Fungal Allies in the Biocontrol of Plant Diseases\u2014A Review","volume":"12","author":"Guzm\u00e1n\u2010Guzm\u00e1n P.","year":"2023","journal-title":"Plants"},{"key":"e_1_2_19_50_1","doi-asserted-by":"crossref","DOI":"10.1016\/j.btre.2024.e00859","article-title":"Eco\u2010Smart Biocontrol Strategies Utilizing Potent Microbes for Sustainable Management of Phytopathogenic Diseases","volume":"44","author":"Haq I. U.","year":"2024","journal-title":"Biotechnology Reports"},{"issue":"7","key":"e_1_2_19_51_1","doi-asserted-by":"crossref","first-page":"1409","DOI":"10.3390\/microorganisms12071409","article-title":"Integrated Benefits to Agriculture With Trichoderma and Other Endophytic or Root\u2010Associated Microbes","volume":"12","author":"Harman G. E.","year":"2024","journal-title":"Microorganisms"},{"key":"e_1_2_19_52_1","doi-asserted-by":"crossref","first-page":"529","DOI":"10.1111\/jam.14368","article-title":"Endophytic Strains of Trichoderma Increase Plants' Photosynthetic Capability","volume":"130","author":"Harman G. E.","year":"2021","journal-title":"Journal of Applied Microbiology"},{"key":"e_1_2_19_53_1","first-page":"145","volume-title":"Role of Arbuscular Mycorrhizal Fungi in Plant Growth Promotion and Biotic Stress Management","author":"Hashem A.","year":"2025"},{"key":"e_1_2_19_54_1","doi-asserted-by":"crossref","first-page":"135","DOI":"10.1111\/brv.12440","article-title":"The Evolutionary Origins of Pesticide Resistance","volume":"94","author":"Hawkins N. J.","year":"2019","journal-title":"Biological Reviews"},{"key":"e_1_2_19_55_1","doi-asserted-by":"crossref","first-page":"62","DOI":"10.1186\/s40793-023-00511-y","article-title":"Pioneer Arabidopsis thaliana Spans the Succession Gradient Revealing a Diverse Root\u2010Associated Microbiome","volume":"18","author":"Hesen V.","year":"2023","journal-title":"Environmental Microbiome"},{"key":"e_1_2_19_56_1","doi-asserted-by":"crossref","DOI":"10.1016\/j.endeavour.2022.100817","article-title":"Introducing the Microbiome: Interdisciplinary Perspectives","volume":"46","author":"H\u00f6ll D.","year":"2022","journal-title":"Endeavour"},{"key":"e_1_2_19_57_1","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2023.1146577","article-title":"Chemical Priming of Plant Defense Responses to Pathogen Attacks","volume":"14","author":"H\u00f6nig M.","year":"2023","journal-title":"Frontiers in Plant Science"},{"key":"e_1_2_19_58_1","doi-asserted-by":"crossref","first-page":"647","DOI":"10.1042\/EBC20210090","article-title":"Salicylic Acid and Jasmonic Acid Crosstalk in Plant Immunity","volume":"66","author":"Hou S.","year":"2022","journal-title":"Essays in Biochemistry"},{"key":"e_1_2_19_59_1","doi-asserted-by":"crossref","first-page":"474","DOI":"10.3390\/foods13030474","article-title":"Food Pesticide Residues Monitoring and Health Risk Assessment","volume":"13","author":"Hua Y.","year":"2024","journal-title":"Foods"},{"issue":"10","key":"e_1_2_19_60_1","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1145\/3563691","article-title":"Explainable Convolutional Neural Networks: A Taxonomy, Review, and Future Directions","volume":"55","author":"Ibrahim R.","year":"2023","journal-title":"ACM Computing Surveys"},{"key":"e_1_2_19_61_1","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2026.1771649","article-title":"Microbial Biocontrol Agents and the Rhizosphere Microbiome: Integrating Ecological Function and Climate Resilience in Sustainable Agriculture","volume":"17","author":"Iqbal M.","year":"2026","journal-title":"Frontiers in Microbiology"},{"issue":"17","key":"e_1_2_19_62_1","doi-asserted-by":"crossref","first-page":"9555","DOI":"10.1021\/acs.jafc.3c09866","article-title":"Comprehensive Analysis of Penicillium sclerotiorum: Biology, Secondary Metabolites, and Bioactive Compound Potential\u2500A Review","volume":"72","author":"Jahan I.","year":"2024","journal-title":"Journal of Agricultural and Food Chemistry"},{"key":"e_1_2_19_63_1","doi-asserted-by":"crossref","first-page":"619","DOI":"10.1038\/nrmicro1705","article-title":"How Rhizobial Symbionts Invade Plants: The Sinorhizobium\u2013Medicago Model","volume":"5","author":"Jones K. M.","year":"2007","journal-title":"Nature Reviews Microbiology"},{"key":"e_1_2_19_64_1","doi-asserted-by":"crossref","unstructured":"Kalam S. A.Basu andS.Ankati.2017. \u201cPlant Root\u2013Associated Biofilms in Bioremediation.\u201d Biofilms in Plant and Soil Health:337\u2013355.","DOI":"10.1002\/9781119246329.ch18"},{"key":"e_1_2_19_65_1","doi-asserted-by":"crossref","first-page":"1013","DOI":"10.1007\/s00253-019-10300-8","article-title":"Antimicrobial Secondary Metabolites From Agriculturally Important Bacteria as Next\u2010Generation Pesticides","volume":"104","author":"Keswani C.","year":"2020","journal-title":"Applied Microbiology and Biotechnology"},{"key":"e_1_2_19_66_1","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0283550","article-title":"Purpureocillium lilacinum for Plant Growth Promotion and Biocontrol Against Root\u2010Knot Nematodes Infecting Eggplant","volume":"18","author":"Khan M.","year":"2023","journal-title":"PLoS One"},{"key":"e_1_2_19_67_1","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2023.1285543","article-title":"Streptomyces as a Promising Biological Control Agents for Plant Pathogens","volume":"14","author":"Khan S.","year":"2023","journal-title":"Frontiers in Microbiology"},{"key":"e_1_2_19_68_1","doi-asserted-by":"crossref","first-page":"1289","DOI":"10.1093\/jxb\/erad448","article-title":"Unraveling Plant\u2013Microbe Interactions: Can Integrated Omics Approaches Offer Concrete Answers?","volume":"75","author":"Kimotho R. N.","year":"2024","journal-title":"Journal of Experimental Botany"},{"key":"e_1_2_19_69_1","doi-asserted-by":"crossref","first-page":"845","DOI":"10.3389\/fpls.2019.00845","article-title":"Mode of Action of Microbial Biological Control Agents Against Plant Diseases: Relevance Beyond Efficacy","volume":"10","author":"K\u00f6hl J.","year":"2019","journal-title":"Frontiers in Plant Science"},{"key":"e_1_2_19_70_1","doi-asserted-by":"crossref","first-page":"1398","DOI":"10.1002\/ppp3.10534","article-title":"Shifts in Plant Functional Trait Dynamics in Relation to Soil Microbiome in Modern and Wild Barley","volume":"6","author":"Kumar A.","year":"2024","journal-title":"Plants People Planet"},{"key":"e_1_2_19_71_1","doi-asserted-by":"crossref","first-page":"44","DOI":"10.9734\/ajsspn\/2025\/v11i2509","article-title":"A Comprehensive Review on Plant\u2010Soil Interactions: Microbial Dynamics, Nutrient Cycling and Sustainable Crop Production","volume":"11","author":"Kumar A.","year":"2025","journal-title":"Asian Journal of Soil Science and Plant Nutrition"},{"key":"e_1_2_19_72_1","first-page":"173","volume-title":"Biofilm\u2010Forming Microbes: Diversity and Potential Application in Plant\u2013Microbe Interaction and Plant Growth","author":"Kumar A.","year":"2020"},{"key":"e_1_2_19_73_1","doi-asserted-by":"crossref","DOI":"10.1016\/j.crmicr.2021.100094","article-title":"Biofertilizers: An Ecofriendly Technology for Nutrient Recycling and Environmental Sustainability","volume":"3","author":"Kumar S.","year":"2022","journal-title":"Current Research in Microbial Sciences"},{"key":"e_1_2_19_74_1","first-page":"1","volume-title":"Innovations in Climate Resilient Agriculture","author":"Latini A.","year":"2025"},{"key":"e_1_2_19_75_1","doi-asserted-by":"crossref","first-page":"2581","DOI":"10.3390\/plants14162581","article-title":"Mycorrhizal and Endophytic Fungi as a Tool for Sustainable Environments","volume":"14","author":"Lavado R. S.","year":"2025","journal-title":"Plants"},{"key":"e_1_2_19_76_1","doi-asserted-by":"crossref","first-page":"630","DOI":"10.3390\/plants12030630","article-title":"Root Exudates Mediate the Processes of Soil Organic Carbon Input and Efflux","volume":"12","author":"Lei X.","year":"2023","journal-title":"Plants"},{"key":"e_1_2_19_77_1","doi-asserted-by":"crossref","first-page":"3945","DOI":"10.3390\/ijms23073945","article-title":"Jasmonate Signaling Pathway Modulates Plant Defense, Growth, and Their Trade\u2010Offs","volume":"23","author":"Li C.","year":"2022","journal-title":"International Journal of Molecular Sciences"},{"key":"e_1_2_19_78_1","doi-asserted-by":"crossref","first-page":"62","DOI":"10.1186\/s13020-025-01112-2","article-title":"Mass Spectrometry\u2010Based Metabolomic as a Powerful Tool to Unravel the Component and Mechanism in TCM","volume":"20","author":"Liao G. Q.","year":"2025","journal-title":"Chinese Medicine"},{"key":"e_1_2_19_79_1","doi-asserted-by":"crossref","first-page":"388","DOI":"10.1186\/s12967-025-06425-2","article-title":"Machine Learning and Multi\u2010Omics Integration: Advancing Cardiovascular Translational Research and Clinical Practice","volume":"23","author":"Lin M.","year":"2025","journal-title":"Journal of Translational Medicine"},{"key":"e_1_2_19_80_1","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2025.1640980","article-title":"Differential Regulation of Soil Microecology in Crop Rotation Systems of Maize, Seed Pumpkin, and Processing Tomato","volume":"16","author":"Liu X.","year":"2025","journal-title":"Frontiers in Microbiology"},{"key":"e_1_2_19_81_1","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2022.1019069","article-title":"The Right Microbe\u2010Associated Molecular Patterns for Effective Recognition by Plants","volume":"13","author":"L\u00fc P.","year":"2022","journal-title":"Frontiers in Microbiology"},{"key":"e_1_2_19_82_1","doi-asserted-by":"crossref","first-page":"1242","DOI":"10.3390\/ijms27031242","article-title":"Network\u2010Driven Insights Into Plant Immunity: Integrating Transcriptomic and Proteomic Approaches in Plant\u2013Pathogen Interactions","volume":"27","author":"Lv Y.","year":"2026","journal-title":"International Journal of Molecular Sciences"},{"key":"e_1_2_19_83_1","doi-asserted-by":"crossref","DOI":"10.3390\/ijms241512227","article-title":"Microbial Consortia for Plant Protection Against Diseases: More Than the Sum of Its Parts","volume":"24","author":"Maciag T.","year":"2023","journal-title":"International Journal of Molecular Sciences"},{"key":"e_1_2_19_84_1","doi-asserted-by":"crossref","first-page":"73","DOI":"10.1007\/s12010-024-05033-y","article-title":"Repercussions of Prolonged Pesticide Use on Natural Soil Microbiome Dynamics Using Metagenomics Approach","volume":"197","author":"Maharana B.","year":"2024","journal-title":"Applied Biochemistry and Biotechnology"},{"key":"e_1_2_19_85_1","doi-asserted-by":"crossref","first-page":"286","DOI":"10.1093\/bib\/bbw114","article-title":"Genome, Transcriptome and Proteome: The Rise of Omics Data and Their Integration in Biomedical Sciences","volume":"19","author":"Manzoni C.","year":"2018","journal-title":"Briefings in Bioinformatics"},{"key":"e_1_2_19_86_1","doi-asserted-by":"crossref","first-page":"5595","DOI":"10.1007\/s00253-023-12687-x","article-title":"Biotechnological Development of Trichoderma\u2010Based Formulations for Biological Control","volume":"107","author":"Martinez Y.","year":"2023","journal-title":"Applied Microbiology and Biotechnology"},{"key":"e_1_2_19_87_1","doi-asserted-by":"crossref","first-page":"184","DOI":"10.1094\/PBIOMES-11-21-0073-RVW","article-title":"Predators of Soil Bacteria in Plant and Human Health","volume":"6","author":"Martins S. J.","year":"2022","journal-title":"Phytobiomes Journal"},{"key":"e_1_2_19_88_1","doi-asserted-by":"crossref","DOI":"10.1093\/ismeco\/ycae120","article-title":"Rhizospheric miRNAs Affect the Plant Microbiota","volume":"4","author":"Middleton H.","year":"2024","journal-title":"ISME Communications"},{"key":"e_1_2_19_89_1","doi-asserted-by":"crossref","first-page":"2228","DOI":"10.3390\/agriculture14122228","article-title":"Harnessing Beneficial Microbes for Drought Tolerance: A Review of Ecological and Agricultural Innovations","volume":"14","author":"Mikiciuk G.","year":"2024","journal-title":"Agriculture"},{"key":"e_1_2_19_90_1","doi-asserted-by":"crossref","first-page":"429","DOI":"10.1007\/s13205-025-04617-7","article-title":"Advanced Nanoparticle\u2010Based Strategies for Plant Viral Disease Management: Mechanisms and Innovations for Crop Protection","volume":"15","author":"Mishra M. K.","year":"2025","journal-title":"3 Biotech"},{"key":"e_1_2_19_91_1","doi-asserted-by":"crossref","first-page":"2008","DOI":"10.3390\/microorganisms10102008","article-title":"Secondary Metabolites Produced by Plant Growth\u2010Promoting Bacterial Endophytes","volume":"10","author":"Narayanan Z.","year":"2022","journal-title":"Microorganisms"},{"key":"e_1_2_19_92_1","doi-asserted-by":"crossref","first-page":"148","DOI":"10.3389\/fpubh.2016.00148","article-title":"Chemical Pesticides and Human Health: The Urgent Need for a New Concept in Agriculture","volume":"4","author":"Nicolopoulou\u2010Stamati P.","year":"2016","journal-title":"Frontiers in Public Health"},{"key":"e_1_2_19_93_1","doi-asserted-by":"crossref","first-page":"100","DOI":"10.1016\/j.molp.2025.11.003","article-title":"Cross\u2010Kingdom RNA Trafficking From Bacteria to Fungi Enables Plant Protection Against Fungal Pathogens","volume":"19","author":"Ni\u00f1o\u2010S\u00e1nchez J.","year":"2026","journal-title":"Molecular Plant"},{"key":"e_1_2_19_94_1","doi-asserted-by":"crossref","first-page":"1179","DOI":"10.1007\/s00253-018-09577-y","article-title":"Streptomyces: Implications and Interactions in Plant Growth Promotion","volume":"103","author":"Olanrewaju O. S.","year":"2019","journal-title":"Applied Microbiology and Biotechnology"},{"key":"e_1_2_19_95_1","doi-asserted-by":"crossref","first-page":"2385","DOI":"10.1007\/s10311-022-01424-x","article-title":"Biochar for Agronomy, Animal Farming, Anaerobic Digestion, Composting, Water Treatment, Soil Remediation, Construction, Energy Storage, and Carbon Sequestration: A Review","volume":"20","author":"Osman A. I.","year":"2022","journal-title":"Environmental Chemistry Letters"},{"issue":"8","key":"e_1_2_19_96_1","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1007\/s00284-024-03781-y","article-title":"Soil Metaproteomics for Microbial Community Profiling: Methodologies and Challenges","volume":"81","author":"Pan H.","year":"2024","journal-title":"Current Microbiology"},{"key":"e_1_2_19_97_1","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2023.1250020","article-title":"Deciphering the Mechanisms, Hormonal Signaling, and Potential Applications of Endophytic Microbes to Mediate Stress Tolerance in Medicinal Plants","volume":"14","author":"Pandey P.","year":"2023","journal-title":"Frontiers in Plant Science"},{"key":"e_1_2_19_98_1","doi-asserted-by":"crossref","first-page":"273","DOI":"10.3390\/pathogens11020273","article-title":"Major Biological Control Strategies for Plant Pathogens","volume":"11","author":"Pandit M. A.","year":"2022","journal-title":"Pathogens"},{"key":"e_1_2_19_99_1","doi-asserted-by":"crossref","first-page":"2864","DOI":"10.1111\/jam.15686","article-title":"The Rhizosphere Microbiome: Plant\u2013Microbial Interactions for Resource Acquisition","volume":"133","author":"Pantigoso H. A.","year":"2022","journal-title":"Journal of Applied Microbiology"},{"key":"e_1_2_19_100_1","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2025.1692450","article-title":"Effects of Waterlogging on Microbial Activity, Soil Nutrient Availability, Nutrient Uptake, and Yield of Tolerant and Sensitive Onion Genotypes","volume":"16","author":"Pawar A. R.","year":"2025","journal-title":"Frontiers in Plant Science"},{"key":"e_1_2_19_101_1","doi-asserted-by":"crossref","first-page":"39","DOI":"10.3390\/microorganisms12010039","article-title":"The Viable but Non\u2010Culturable (VBNC) State, a Poorly Explored Aspect of Beneficial Bacteria","volume":"12","author":"Pazos\u2010Rojas L. A.","year":"2023","journal-title":"Microorganisms"},{"key":"e_1_2_19_102_1","doi-asserted-by":"crossref","first-page":"171","DOI":"10.1007\/978-3-032-08100-1_9","volume-title":"Disease Suppressive Tropical Soils","author":"Pedrozo R.","year":"2026"},{"key":"e_1_2_19_103_1","doi-asserted-by":"crossref","first-page":"347","DOI":"10.1146\/annurev-phyto-082712-102340","article-title":"Induced Systemic Resistance by Beneficial Microbes","volume":"52","author":"Pieterse C. M. J.","year":"2014","journal-title":"Annual Review of Phytopathology"},{"key":"e_1_2_19_104_1","doi-asserted-by":"crossref","first-page":"102","DOI":"10.1007\/s13205-023-03519-w","article-title":"Abiotic Stress Tolerance in Plants: A Fascinating Action of Defense Mechanisms","volume":"13","author":"Praveen A.","year":"2023","journal-title":"3 Biotech"},{"key":"e_1_2_19_105_1","doi-asserted-by":"crossref","first-page":"315","DOI":"10.1007\/s42976-023-00393-3","article-title":"The Role of Potassium Under Salinity Stress in Crop Plants","volume":"52","author":"Praveen A.","year":"2024","journal-title":"Cereal Research Communications"},{"key":"e_1_2_19_106_1","doi-asserted-by":"crossref","first-page":"537","DOI":"10.1007\/s42976-022-00340-8","article-title":"Action of Nanoparticles in the Amelioration of Heavy Metal Phytotoxicity","volume":"51","author":"Praveen A.","year":"2023","journal-title":"Cereal Research Communications"},{"key":"e_1_2_19_107_1","doi-asserted-by":"crossref","first-page":"1998","DOI":"10.3390\/ani15131998","article-title":"Genomic Characterization of Four Novel Probiotic Strains With Enzymatic Activity and Their Effects on Carp (Cyprinus carpio)","volume":"15","author":"Prazdnova E. V.","year":"2025","journal-title":"Animals: An Open Access Journal from MDPI"},{"key":"e_1_2_19_108_1","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2026.1738299","article-title":"Epigenetic Modifications in Plant Abiotic Stress Adaptation: Towards Climate\u2010Resilient and Sustainable Crop Improvement","volume":"17","author":"Qadir M.","year":"2026","journal-title":"Frontiers in Plant Science"},{"key":"e_1_2_19_109_1","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2023.1221288","article-title":"Impact of Drought on Soil Microbial Biomass and Extracellular Enzyme Activity","volume":"14","author":"Qu Q.","year":"2023","journal-title":"Frontiers in Plant Science"},{"key":"e_1_2_19_110_1","doi-asserted-by":"crossref","first-page":"80","DOI":"10.1007\/s00299-024-03153-7","article-title":"Transcriptomics, Proteomics, and Metabolomics Interventions Prompt Crop Improvement Against Metal(Loid) Toxicity","volume":"43","author":"Raza A.","year":"2024","journal-title":"Plant Cell Reports"},{"key":"e_1_2_19_111_1","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2026.1719665","article-title":"Microencapsulation of Lactobacillus plantarum and Bacillus subtilis Using Baker's Yeast Cell Wall: Characterization and Stability Assessment Under Stress Conditions","volume":"17","author":"Rehman S.","year":"2026","journal-title":"Frontiers in Microbiology"},{"key":"e_1_2_19_112_1","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2025.1667328","article-title":"Plant Genomic and Microbial Interplay in the Rhizosphere Under Salt Stress: A Review","volume":"16","author":"Ren Y.","year":"2026","journal-title":"Frontiers in Plant Science"},{"key":"e_1_2_19_113_1","doi-asserted-by":"crossref","first-page":"3453","DOI":"10.3390\/plants14223453","article-title":"Bridging Microbial Biocontrol and Phytochemical Biopesticides: Synergistic Approaches for Sustainable Crop Protection","volume":"14","author":"Rezaee Danesh Y.","year":"2025","journal-title":"Plants"},{"key":"e_1_2_19_114_1","first-page":"30","volume-title":"Frontiers in Bioscience","author":"Riseh R. S.","year":"2025"},{"key":"e_1_2_19_115_1","doi-asserted-by":"crossref","first-page":"1357","DOI":"10.3389\/fpls.2019.01357","article-title":"Seed Coating: A Tool for Delivering Beneficial Microbes to Agricultural Crops","volume":"10","author":"Rocha I.","year":"2019","journal-title":"Frontiers in Plant Science"},{"key":"e_1_2_19_116_1","doi-asserted-by":"crossref","first-page":"89","DOI":"10.1007\/s00344-024-11264-4","article-title":"Jasmonic Acid (JA) in Plant Immune Response: Unravelling Complex Molecular Mechanisms and Networking of Defence Signalling Against Pathogens","volume":"44","author":"Roychowdhury R.","year":"2024","journal-title":"Journal of Plant Growth Regulation"},{"key":"e_1_2_19_117_1","doi-asserted-by":"crossref","DOI":"10.3390\/ijms222011165","article-title":"Encapsulation of Plant Biocontrol Bacteria With Alginate as a Main Polymer Material","volume":"22","author":"Saberi Riseh R.","year":"2021","journal-title":"International Journal of Molecular Sciences"},{"key":"e_1_2_19_118_1","doi-asserted-by":"crossref","DOI":"10.1016\/j.lwt.2022.113471","article-title":"Screening of Potential Probiotic Lactic Acid Bacteria With Antimicrobial Properties and Selection of Superior Bacteria for Application as Biocontrol Using Machine Learning Models","volume":"162","author":"Sadeghi M.","year":"2022","journal-title":"Lwt"},{"key":"e_1_2_19_119_1","doi-asserted-by":"crossref","first-page":"281","DOI":"10.1007\/s42770-023-01228-3","article-title":"Lipopeptides From Bacillus: Unveiling Biotechnological Prospects\u2014Sources, Properties, and Diverse Applications","volume":"55","author":"Saiyam D.","year":"2024","journal-title":"Brazilian Journal of Microbiology"},{"key":"e_1_2_19_120_1","doi-asserted-by":"crossref","first-page":"3986","DOI":"10.1038\/s41598-025-34087-z","article-title":"Quorum\u2010Quenching Halotolerant Bacteria as Biocontrol Agents Against Potato Phytopathogens","volume":"16","author":"S\u00e1nchez P.","year":"2026","journal-title":"Scientific Reports"},{"key":"e_1_2_19_121_1","doi-asserted-by":"crossref","first-page":"1227","DOI":"10.1111\/tpj.16184","article-title":"Role of Mycorrhizas and Root Exudates in Plant Uptake of Soil Nutrients (Calcium, Iron, Magnesium, and Potassium): Has the Puzzle Been Completely Solved?","volume":"114","author":"Sardans J.","year":"2023","journal-title":"Plant Journal"},{"key":"e_1_2_19_122_1","doi-asserted-by":"crossref","first-page":"56","DOI":"10.1038\/s41522-025-00684-z","article-title":"Synergic Interactions Between Trichoderma and the Soil Microbiomes Improve Plant Iron Availability and Growth","volume":"11","author":"Shao Y.","year":"2025","journal-title":"NPJ Biofilms and Microbiomes"},{"key":"e_1_2_19_123_1","first-page":"28","article-title":"Microbial Inoculants: Recent Progress in Formulations and Methods of Application","volume":"1","author":"Sharma P.","year":"2023","journal-title":"In Microbial Inoculants: Recent Progress and Applications"},{"key":"e_1_2_19_124_1","doi-asserted-by":"crossref","first-page":"4400","DOI":"10.3390\/molecules29184400","article-title":"Progress in the Study of Natural Antimicrobial Active Substances in Pseudomonas aeruginosa","volume":"29","author":"Si T.","year":"2024","journal-title":"Molecules"},{"key":"e_1_2_19_125_1","doi-asserted-by":"crossref","first-page":"577","DOI":"10.1007\/s11104-025-08010-4","article-title":"Chemical Dialogues in the Rhizosphere: Metabolomics Perspectives on Plant Defence and Microbial Interactions","volume":"518","author":"Sibanyoni N. R.","year":"2025","journal-title":"Plant and Soil"},{"key":"e_1_2_19_126_1","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2022.898979","article-title":"Mechanistic Insights and Potential Use of Siderophores Producing Microbes in Rhizosphere for Mitigation of Stress in Plants Grown in Degraded Land","volume":"13","author":"Singh P.","year":"2022","journal-title":"Frontiers in Microbiology"},{"key":"e_1_2_19_127_1","doi-asserted-by":"crossref","first-page":"1141","DOI":"10.1007\/s00709-026-02189-8","article-title":"Exploring the Link Between Heavy Metals Detoxification and Crop Improvements","volume":"263","author":"Singh P.","year":"2026","journal-title":"Protoplasma"},{"key":"e_1_2_19_128_1","doi-asserted-by":"crossref","first-page":"2212","DOI":"10.1111\/1751-7915.14322","article-title":"Seed Biopriming for Sustainable Agriculture and Ecosystem Restoration","volume":"16","author":"Singh P.","year":"2023","journal-title":"Microbial Biotechnology"},{"key":"e_1_2_19_129_1","doi-asserted-by":"crossref","first-page":"294","DOI":"10.1007\/s00299-024-03383-9","article-title":"Single\u2010Cell Transcriptomics: A New Frontier in Plant Biotechnology Research","volume":"43","author":"Singh S.","year":"2024","journal-title":"Plant Cell Reports"},{"key":"e_1_2_19_130_1","doi-asserted-by":"crossref","first-page":"1185","DOI":"10.1007\/s12298-024-01480-3","article-title":"Integrating Physiological and Multi\u2010Omics Methods to Elucidate Heat Stress Tolerance for Sustainable Rice Production","volume":"30","author":"Singh S.","year":"2024","journal-title":"Physiology and Molecular Biology of Plants"},{"key":"e_1_2_19_131_1","doi-asserted-by":"crossref","first-page":"158","DOI":"10.1007\/s00248-024-02472-2","article-title":"Harnessing Trichoderma mycoparasitism as a Tool in the Management of Soil\u2010Dwelling Plant Pathogens","volume":"87","author":"Singh S.","year":"2024","journal-title":"Microbial Ecology"},{"key":"e_1_2_19_132_1","first-page":"41","article-title":"Different Microorganisms Used in Fermentation for Biofertilizer: A Review","volume":"1","author":"Sokra I.","year":"2025","journal-title":"Journal of Agricultural Technology"},{"key":"e_1_2_19_133_1","doi-asserted-by":"crossref","first-page":"1451","DOI":"10.1093\/plcell\/koad329","article-title":"Salicylic Acid in Plant Immunity and Beyond","volume":"36","author":"Spoel S. H.","year":"2024","journal-title":"Plant Cell"},{"key":"e_1_2_19_134_1","doi-asserted-by":"crossref","DOI":"10.1080\/15592324.2023.2227440","article-title":"Role of Microbial Volatile Organic Compounds in Promoting Plant Growth and Disease Resistance in Horticultural Production","volume":"18","author":"Srikamwang C.","year":"2023","journal-title":"Plant Signaling & Behavior"},{"key":"e_1_2_19_135_1","first-page":"2025","article-title":"The Biocontrol and Growth\u2010Promoting Potential of Penicillium spp. and Trichoderma spp. in Sustainable Agriculture","volume":"14","author":"Sun W.","year":"2007","journal-title":"Plants"},{"key":"e_1_2_19_136_1","doi-asserted-by":"crossref","first-page":"613","DOI":"10.3390\/plants13050613","article-title":"The Roles of Plant\u2010Growth\u2010Promoting Rhizobacteria (PGPR)\u2010Based Biostimulants for Agricultural Production Systems","volume":"13","author":"Sun W.","year":"2024","journal-title":"Plants"},{"key":"e_1_2_19_137_1","doi-asserted-by":"crossref","first-page":"1071","DOI":"10.12688\/f1000research.154392.4","article-title":"Recent Advances in Biopesticide Research and Development With a Focus on Microbials","volume":"13","author":"Tadesse Mawcha K.","year":"2025","journal-title":"F1000Research"},{"key":"e_1_2_19_138_1","doi-asserted-by":"crossref","DOI":"10.1128\/msphere.00037-25","article-title":"Rhizosphere\u2010Colonizing Bacteria Persist in the Protist Microbiome","volume":"10","author":"Taerum S. J.","year":"2025","journal-title":"mSphere"},{"key":"e_1_2_19_139_1","first-page":"1","article-title":"Impact of Pesticides Used in Agriculture: Their Benefits and Hazards","volume":"2986","author":"Thakur R.","year":"2024","journal-title":"AIP Conference Proceedings"},{"key":"e_1_2_19_140_1","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1080\/15226514.2026.2703736","article-title":"Deciphering Ways of Heavy Metals Toxicity Reduction in Crop Plants","author":"Tiwari S.","year":"2026","journal-title":"International Journal of Phytoremediation"},{"key":"e_1_2_19_141_1","doi-asserted-by":"crossref","first-page":"607","DOI":"10.1038\/s41579-020-0412-1","article-title":"Plant\u2013Microbiome Interactions: From Community Assembly to Plant Health","volume":"18","author":"Trivedi P.","year":"2020","journal-title":"Nature Reviews Microbiology"},{"key":"e_1_2_19_142_1","doi-asserted-by":"crossref","first-page":"1890","DOI":"10.3390\/plants14121890","article-title":"Plant Microbiomes Alleviate Abiotic Stress\u2010Associated Damage in Crops and Enhance Climate\u2010Resilient Agriculture","volume":"14","author":"Ullah F.","year":"2025","journal-title":"Plants"},{"key":"e_1_2_19_143_1","doi-asserted-by":"crossref","first-page":"813","DOI":"10.3390\/microorganisms13040813","article-title":"Endophytic and Rhizospheric Microorganisms: An Alternative for Sustainable, Organic, and Regenerative Bioinput Formulations for Modern Agriculture","volume":"13","author":"Valente I. L.","year":"2025","journal-title":"Microorganisms"},{"key":"e_1_2_19_144_1","doi-asserted-by":"crossref","DOI":"10.1016\/j.agee.2019.106583","article-title":"The Role of Legumes in the Sustainable Intensification of African Smallholder Agriculture: Lessons Learnt and Challenges for the Future","volume":"284","author":"Vanlauwe B.","year":"2019","journal-title":"Agriculture, Ecosystems & Environment"},{"key":"e_1_2_19_145_1","first-page":"69","volume-title":"Ecology and Mechanisms of Plant Growth\u2010Promoting Rhizobacteria","author":"Verma A.","year":"2023"},{"key":"e_1_2_19_146_1","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1007\/s00299-019-02447-5","article-title":"Root Exudates: From Plant to Rhizosphere and Beyond","volume":"39","author":"Vives\u2010Peris V.","year":"2020","journal-title":"Plant Cell Reports"},{"key":"e_1_2_19_147_1","doi-asserted-by":"crossref","DOI":"10.1016\/j.micres.2024.127603","article-title":"Trophic Relationships Between Protists and Bacteria and Fungi Drive the Biogeography of Rhizosphere Soil Microbial Community and Impact Plant Physiological and Ecological Functions","volume":"280","author":"Wang B.","year":"2024","journal-title":"Microbiological Research"},{"key":"e_1_2_19_148_1","doi-asserted-by":"crossref","first-page":"233","DOI":"10.1186\/s40168-022-01420-x","article-title":"Multifaceted Roles of Flavonoids Mediating Plant\u2013Microbe Interactions","volume":"10","author":"Wang L.","year":"2022","journal-title":"Microbiome"},{"key":"e_1_2_19_149_1","doi-asserted-by":"crossref","first-page":"7127","DOI":"10.3390\/app15137127","article-title":"A Review of Plant\u2013Microbe Interactions in the Rhizosphere and the Role of Root Exudates in Microbiome Engineering","volume":"15","author":"Wankhade A.","year":"2025","journal-title":"Applied Sciences"},{"key":"e_1_2_19_150_1","doi-asserted-by":"crossref","DOI":"10.1038\/s41467-024-53947-2","article-title":"Microbial Trait Multifunctionality Drives Soil Organic Matter Formation Potential","volume":"15","author":"Whalen E. D.","year":"2024","journal-title":"Nature Communications"},{"key":"e_1_2_19_151_1","doi-asserted-by":"crossref","first-page":"312","DOI":"10.1038\/s41579-022-00819-5","article-title":"Trichoderma: A Multipurpose, Plant\u2010Beneficial Microorganism for Eco\u2010Sustainable Agriculture","volume":"21","author":"Woo S. L.","year":"2022","journal-title":"Nature Reviews Microbiology"},{"key":"e_1_2_19_152_1","doi-asserted-by":"crossref","first-page":"1131","DOI":"10.1039\/D5CS00248F","article-title":"Chemical Management of Phytopathogenic Bacteria: Emerging Compounds, Molecular Targets and Outlook","volume":"55","author":"Wu S.","year":"2026","journal-title":"Chemical Society Reviews"},{"key":"e_1_2_19_153_1","doi-asserted-by":"crossref","DOI":"10.1111\/mpp.70057","article-title":"Decoding Plant\u2013Pathogen Interactions: A Comprehensive Exploration of Effector\u2013Plant Transcription Factor Dynamics","volume":"26","author":"Xiang H.","year":"2025","journal-title":"Molecular Plant Pathology"},{"key":"e_1_2_19_154_1","doi-asserted-by":"crossref","DOI":"10.1002\/imt2.70094","article-title":"Soil\u2010Borne Legacy Facilitates the Dissemination of Antibiotic Resistance Genes in Soil\u2013Plant Continua","volume":"4","author":"Xiao Z.","year":"2025","journal-title":"iMeta"},{"key":"e_1_2_19_155_1","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2025.1536524","article-title":"Enhancing Soil Health Through Balanced Fertilization: A Pathway to Sustainable Agriculture and Food Security","volume":"16","author":"Xing Y.","year":"2025","journal-title":"Frontiers in Microbiology"},{"key":"e_1_2_19_156_1","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.04165-23","article-title":"Soil pH Amendment Alters the Abundance, Diversity, and Composition of Microbial Communities in Two Contrasting Agricultural Soils","volume":"12","author":"Xiong R.","year":"2024","journal-title":"Microbiology Spectrum"},{"key":"e_1_2_19_157_1","doi-asserted-by":"crossref","first-page":"423","DOI":"10.1007\/s13205-023-03841-3","article-title":"Metagenomics and Metatranscriptomics as Potential Driving Forces for the Exploration of Diversity and Functions of Micro\u2010Eukaryotes in Soil","volume":"13","author":"Yadav B. N. S.","year":"2023","journal-title":"3 Biotech"},{"key":"e_1_2_19_158_1","doi-asserted-by":"crossref","first-page":"1301","DOI":"10.1016\/j.oneear.2024.06.005","article-title":"High Microbiome Diversity Constricts the Prevalence of Human and Animal Pathogens in the Plant Rhizosphere Worldwide","volume":"7","author":"Yang X.","year":"2024","journal-title":"One Earth"},{"key":"e_1_2_19_159_1","doi-asserted-by":"crossref","first-page":"386","DOI":"10.3390\/plants11030386","article-title":"Induced Systemic Resistance for Improving Plant Immunity by Beneficial Microbes","volume":"11","author":"Yu Y.","year":"2022","journal-title":"Plants"},{"key":"e_1_2_19_160_1","doi-asserted-by":"crossref","first-page":"70","DOI":"10.1186\/s40168-023-01513-1","article-title":"Plant Domestication Shapes Rhizosphere Microbiome Assembly and Metabolic Functions","volume":"11","author":"Yue H.","year":"2023","journal-title":"Microbiome"},{"key":"e_1_2_19_161_1","doi-asserted-by":"crossref","first-page":"4194","DOI":"10.3390\/polym14194194","article-title":"Encapsulation of Bioactive Compounds for Food and Agricultural Applications","volume":"14","author":"Zabot G. L.","year":"2022","journal-title":"Polymers"},{"key":"e_1_2_19_162_1","doi-asserted-by":"crossref","first-page":"753","DOI":"10.3390\/plants15050753","article-title":"Application of Beneficial Bacteria to Enhance Plant Drought Resilience","volume":"15","author":"Zhakypbek Y.","year":"2026","journal-title":"Plants"},{"key":"e_1_2_19_163_1","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1007\/s11104-022-05788-5","article-title":"Secondary Forest Succession Drives Differential Responses of Bacterial Communities and Interactions Rather Than Bacterial Functional Groups in the Rhizosphere and Bulk Soils in a Subalpine Region","volume":"484","author":"Zhang X.","year":"2022","journal-title":"Plant and Soil"},{"key":"e_1_2_19_164_1","doi-asserted-by":"crossref","DOI":"10.1016\/j.cej.2023.147311","article-title":"Spatiotemporal Dynamics of Root Exudates Drive Microbial Adaptation Mechanisms Under Day\u2010Night Alterations in Constructed Wetlands","volume":"477","author":"Zhao X.","year":"2023","journal-title":"Chemical Engineering Journal"},{"key":"e_1_2_19_165_1","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2026.1722279","article-title":"Microbiome and Plant Relationship: A Symbiosis Against Phytopathogens","volume":"17","author":"Zholdasbek A.","year":"2026","journal-title":"Frontiers in Plant Science"},{"key":"e_1_2_19_166_1","doi-asserted-by":"crossref","first-page":"6599","DOI":"10.1038\/s41467-024-50685-3","article-title":"Superiority of Native Soil Core Microbiomes in Supporting Plant Growth","volume":"15","author":"Zhou Y.","year":"2024","journal-title":"Nature Communications"},{"key":"e_1_2_19_167_1","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2022.1063393","article-title":"Innovative Microbial Disease Biocontrol Strategies Mediated by Quorum Quenching and Their Multifaceted Applications: A Review","volume":"13","author":"Zhu X.","year":"2023","journal-title":"Frontiers in Plant Science"}],"container-title":["MicrobiologyOpen"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1002\/mbo3.70398","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/full-xml\/10.1002\/mbo3.70398","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1002\/mbo3.70398","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,9,29]],"date-time":"2026-09-29T04:33:23Z","timestamp":1790656403000},"score":1,"resource":{"primary":{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/10.1002\/mbo3.70398"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9,28]]},"references-count":166,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2026,10]]}},"alternative-id":["10.1002\/mbo3.70398"],"URL":"https:\/\/doi.org\/10.1002\/mbo3.70398","archive":["Portico"],"relation":{},"ISSN":["2045-8827","2045-8827"],"issn-type":[{"value":"2045-8827","type":"print"},{"value":"2045-8827","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,9,28]]},"assertion":[{"value":"2026-06-11","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2026-08-31","order":2,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2026-09-28","order":3,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e70398"}}