{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,2]],"date-time":"2026-10-02T06:35:44Z","timestamp":1790922944688,"version":"4.1.0"},"reference-count":31,"publisher":"Wiley","issue":"11","license":[{"start":{"date-parts":[[2019,4,21]],"date-time":"2019-04-21T00:00:00Z","timestamp":1555804800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["MicrobiologyOpen"],"published-print":{"date-parts":[[2019,11]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>A total of 294 fecal swabs from 294 wild birds in Switzerland were cultivated for antimicrobial resistant (AMR) <jats:italic>Escherichia coli<\/jats:italic>. Samples were also subcultivated to detect <jats:italic>E.\u00a0coli<\/jats:italic> with extended\u2010spectrum \u03b2\u2010lactamases (ESBL), carbapenemases, and plasmid\u2010mediated aminoglycoside or colistin resistance, respectively. Samples from 17 (5.8%) of the birds contained 19 AMR <jats:italic>E.\u00a0coli<\/jats:italic>, whereof 26.3% were multidrug resistant. Five (1.7%) ESBL\u2010producing <jats:italic>E.\u00a0coli<\/jats:italic> were detected. The isolates harbored <jats:italic>bla<\/jats:italic><jats:sub>CTX\u2010M\u20101<\/jats:sub> (two isolated from carrion crows and from one great spotted woodpecker, respectively), <jats:italic>bla<\/jats:italic><jats:sub>CTX\u2010M\u201015<\/jats:sub> (originating from a grey heron), <jats:italic>bla<\/jats:italic><jats:sub>CTX\u2010M\u201055<\/jats:sub> (from a carrion crow), and <jats:italic>bla<\/jats:italic><jats:sub>CTX\u2010M\u201065<\/jats:sub> (from a common blackbird). Phylogenetic analysis assigned three isolates to commensal phylogroups A and B1, one to extraintestinal pathogenic group B2, and one to phylogroup F. Multilocus sequence typing identified sequence types (STs) that have been found previously in ESBL <jats:italic>E.\u00a0coli<\/jats:italic> in wild birds (ST58, ST205, ST540). One isolate harboring <jats:italic>bla<\/jats:italic><jats:sub>CTX\u2010M\u201055<\/jats:sub> was assigned to the recently emerged fluoroquinolone\u2010resistant, extraintestinal pathogenic <jats:italic>E.\u00a0coli<\/jats:italic> clone ST1193. Wild birds have the potential to disperse AMR, including clinically important resistance genes, from anthropogenic\u2010influenced habitats to diverse areas, including vulnerable natural environments such as surface waters or mountain regions.<\/jats:p>","DOI":"10.1002\/mbo3.845","type":"journal-article","created":{"date-parts":[[2019,4,22]],"date-time":"2019-04-22T04:43:57Z","timestamp":1555908237000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":58,"title":["Antimicrobial resistant and extended\u2010spectrum \u03b2\u2010lactamase producing <i>Escherichia coli<\/i> in common wild bird species in Switzerland"],"prefix":"10.1002","volume":"8","author":[{"given":"Katrin","family":"Zurfluh","sequence":"first","affiliation":[{"name":"Vetsuisse Faculty National Centre for Enteropathogenic Bacteria and Listeria (NENT) Institute for Food Safety and Hygiene University of Zurich Zurich Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sarah","family":"Albini","sequence":"additional","affiliation":[{"name":"Vetsuisse Faculty National Reference Centre for Poultry and Rabbit Diseases (NRGK) Institute for Food Safety and Hygiene University of Zurich Zurich Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Prisca","family":"Mattmann","sequence":"additional","affiliation":[{"name":"Vetsuisse Faculty National Reference Centre for Poultry and Rabbit Diseases (NRGK) Institute for Food Safety and Hygiene University of Zurich Zurich Switzerland"},{"name":"Swiss Ornithological Institute Sempach Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Patrick","family":"Kindle","sequence":"additional","affiliation":[{"name":"Vetsuisse Faculty National Centre for Enteropathogenic Bacteria and Listeria (NENT) Institute for Food Safety and Hygiene University of Zurich Zurich Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Magdalena","family":"N\u00fcesch\u2010Inderbinen","sequence":"additional","affiliation":[{"name":"Vetsuisse Faculty National Centre for Enteropathogenic Bacteria and Listeria (NENT) Institute for Food Safety and Hygiene University of Zurich Zurich Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Roger","family":"Stephan","sequence":"additional","affiliation":[{"name":"Vetsuisse Faculty National Centre for Enteropathogenic Bacteria and Listeria (NENT) Institute for Food Safety and Hygiene University of Zurich Zurich Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Barbara R.","family":"Vogler","sequence":"additional","affiliation":[{"name":"Vetsuisse Faculty National Reference Centre for Poultry and Rabbit Diseases (NRGK) Institute for Food Safety and Hygiene University of Zurich Zurich Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2019,4,21]]},"reference":[{"key":"e_1_2_7_2_1","doi-asserted-by":"publisher","DOI":"10.1186\/s13620-016-0072-7"},{"key":"e_1_2_7_3_1","doi-asserted-by":"publisher","DOI":"10.1098\/rsbl.2016.0137"},{"key":"e_1_2_7_4_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0190380"},{"key":"e_1_2_7_5_1","doi-asserted-by":"publisher","DOI":"10.1128\/AAC.02849-15"},{"key":"e_1_2_7_6_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.diagmicrobio.2015.11.008"},{"key":"e_1_2_7_7_1","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dkq222"},{"key":"e_1_2_7_8_1","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2012.00110"},{"key":"e_1_2_7_9_1","doi-asserted-by":"publisher","DOI":"10.1111\/1758-2229.12019"},{"key":"e_1_2_7_10_1","volume-title":"Performance standards for antimicrobial susceptibility testing","author":"Clinical and Laboratory Standards Institute","year":"2017"},{"key":"e_1_2_7_11_1","unstructured":"Federal Office of Public Health and Federal Food Safety and Veterinary Office. (2018).Swiss antibiotic resistance report 2018. Usage of antibiotics and occurrence of antibiotic resistance in bacteria from humans and animals in Switzerland. FOPH publication number: 2018\u2010OEG\u201087 Berne Switzerland. Retrieved fromhttp:\/\/www.anresis.ch\/index.php\/anresisch-data-de.html"},{"key":"e_1_2_7_12_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0053039"},{"key":"e_1_2_7_13_1","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2011.00246"},{"key":"e_1_2_7_14_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.vetmic.2009.12.016"},{"key":"e_1_2_7_15_1","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0076150"},{"key":"e_1_2_7_16_1","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.02926-15"},{"key":"e_1_2_7_17_1","doi-asserted-by":"publisher","DOI":"10.1128\/JCM.01251-15"},{"key":"e_1_2_7_18_1","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2017.02476"},{"key":"e_1_2_7_19_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.scitotenv.2015.09.135"},{"key":"e_1_2_7_20_1","doi-asserted-by":"publisher","DOI":"10.1089\/mdr.2018.0004"},{"key":"e_1_2_7_21_1","doi-asserted-by":"publisher","DOI":"10.2807\/1560-7917.ES.2018.23.6.17-00672"},{"key":"e_1_2_7_22_1","doi-asserted-by":"publisher","DOI":"10.1093\/cid\/ciy525"},{"key":"e_1_2_7_23_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.jgar.2019.01.014"},{"key":"e_1_2_7_24_1","doi-asserted-by":"publisher","DOI":"10.1099\/mic.0.000367"},{"key":"e_1_2_7_25_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365-2958.2006.05172.x"},{"key":"e_1_2_7_26_1","doi-asserted-by":"publisher","DOI":"10.1093\/jac\/dki412"},{"key":"e_1_2_7_27_1","volume-title":"Global report on surveillance","author":"World Health Organization","year":"2014"},{"key":"e_1_2_7_28_1","doi-asserted-by":"publisher","DOI":"10.1038\/srep44866"},{"key":"e_1_2_7_29_1","doi-asserted-by":"publisher","DOI":"10.1186\/s12879-014-0659-0"},{"key":"e_1_2_7_30_1","doi-asserted-by":"publisher","DOI":"10.1128\/AEM.00054-13"},{"key":"e_1_2_7_31_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.ijantimicag.2012.11.005"},{"key":"e_1_2_7_32_1","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2014.00519"}],"container-title":["MicrobiologyOpen"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1002\/mbo3.845","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/full-xml\/10.1002\/mbo3.845","content-type":"application\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1002\/mbo3.845","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,9,9]],"date-time":"2023-09-09T02:12:05Z","timestamp":1694225525000},"score":1,"resource":{"primary":{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/10.1002\/mbo3.845"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,4,21]]},"references-count":31,"journal-issue":{"issue":"11","published-print":{"date-parts":[[2019,11]]}},"alternative-id":["10.1002\/mbo3.845"],"URL":"https:\/\/doi.org\/10.1002\/mbo3.845","archive":["Portico"],"relation":{},"ISSN":["2045-8827","2045-8827"],"issn-type":[{"value":"2045-8827","type":"print"},{"value":"2045-8827","type":"electronic"}],"subject":[],"published":{"date-parts":[[2019,4,21]]},"assertion":[{"value":"2019-02-06","order":0,"name":"received","label":"Received","group":{"name":"publication_history","label":"Publication History"}},{"value":"2019-03-18","order":1,"name":"accepted","label":"Accepted","group":{"name":"publication_history","label":"Publication History"}},{"value":"2019-04-21","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}],"article-number":"e845"}}