{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,16]],"date-time":"2026-10-16T02:35:02Z","timestamp":1792118102284,"version":"4.4.0"},"reference-count":37,"publisher":"Elsevier BV","issue":"6","license":[{"start":{"date-parts":[[2014,11,1]],"date-time":"2014-11-01T00:00:00Z","timestamp":1414800000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2015,3,12]],"date-time":"2015-03-12T00:00:00Z","timestamp":1426118400000},"content-version":"vor","delay-in-days":131,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["New Microbes and New Infections"],"published-print":{"date-parts":[[2014,11]]},"DOI":"10.1002\/nmi2.62","type":"journal-article","created":{"date-parts":[[2014,9,29]],"date-time":"2014-09-29T02:32:20Z","timestamp":1411957940000},"page":"161-169","source":"Crossref","is-referenced-by-count":26,"title":["Genomic analysis of three African strains of Bacillus anthracis demonstrates that they are part of the clonal expansion of an exclusively pathogenic bacterium"],"prefix":"10.1016","volume":"2","author":[{"given":"L.","family":"Rouli","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M.","family":"Mbengue","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"C.","family":"Robert","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M.","family":"Ndiaye","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"B.","family":"La Scola","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"D.","family":"Raoult","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1002\/nmi2.62_bib1","first-page":"86","article-title":"The return of anthrax. From bioterrorism to the zoonotic cluster of Sciacca district","volume":"18","author":"Scarlata","year":"2010","journal-title":"Infez Med"},{"key":"10.1002\/nmi2.62_bib2","doi-asserted-by":"crossref","first-page":"661","DOI":"10.1016\/j.bios.2012.10.088","article-title":"Rapid detection of Bacillus anthracis spores using a super\u2010paramagnetic lateral\u2010flow immunological detection system","volume":"42","author":"Wang","year":"2013","journal-title":"Biosens Bioelectron"},{"key":"10.1002\/nmi2.62_bib3","doi-asserted-by":"crossref","first-page":"386","DOI":"10.1016\/j.mam.2009.07.004","article-title":"Bacillus anthracis physiology and genetics","volume":"30","author":"Koehler","year":"2009","journal-title":"Mol Aspects Med"},{"key":"10.1002\/nmi2.62_bib4","doi-asserted-by":"crossref","first-page":"1333","DOI":"10.1164\/rccm.201102-0209CI","article-title":"Anthrax infection","volume":"184","author":"Sweeney","year":"2011","journal-title":"Am J Respir Crit Care Med"},{"key":"10.1002\/nmi2.62_bib5","doi-asserted-by":"crossref","first-page":"e00232","DOI":"10.1128\/mBio.00232-11","article-title":"Bioterrorism: lessons learned since the anthrax mailings","volume":"2","author":"Imperiale","year":"2011","journal-title":"MBio"},{"key":"10.1002\/nmi2.62_bib6","doi-asserted-by":"crossref","first-page":"5027","DOI":"10.1073\/pnas.1016657108","article-title":"Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation","volume":"108","author":"Rasko","year":"2011","journal-title":"Proc Natl Acad Sci USA"},{"key":"10.1002\/nmi2.62_bib7","doi-asserted-by":"crossref","first-page":"3531","DOI":"10.1128\/JB.186.11.3531-3538.2004","article-title":"Distinct mutations in PlcR explain why some strains of the Bacillus cereus group are nonhemolytic","volume":"186","author":"Slamti","year":"2004","journal-title":"J Bacteriol"},{"key":"10.1002\/nmi2.62_bib8","doi-asserted-by":"crossref","first-page":"e461","DOI":"10.1371\/journal.pone.0000461","article-title":"Global genetic population structure of Bacillus anthracis","volume":"2","author":"Van Ert","year":"2007","journal-title":"PLoS One"},{"key":"10.1002\/nmi2.62_bib9","doi-asserted-by":"crossref","first-page":"397","DOI":"10.1016\/j.mam.2009.08.005","article-title":"The genome and variation of Bacillus anthracis","volume":"30","author":"Keim","year":"2009","journal-title":"Mol Aspects Med"},{"key":"10.1002\/nmi2.62_bib10","doi-asserted-by":"crossref","first-page":"2928","DOI":"10.1128\/JB.182.10.2928-2936.2000","article-title":"Multiple\u2010locus variable\u2010number tandem repeat analysis reveals genetic relationships within Bacillus anthracis","volume":"182","author":"Keim","year":"2000","journal-title":"J Bacteriol"},{"key":"10.1002\/nmi2.62_bib11","doi-asserted-by":"crossref","first-page":"2028","DOI":"10.1126\/science.1071837","article-title":"Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis","volume":"296","author":"Read","year":"2002","journal-title":"Science"},{"key":"10.1002\/nmi2.62_bib12","doi-asserted-by":"crossref","first-page":"445","DOI":"10.1128\/JB.01347-08","article-title":"The complete genome sequence of Bacillus anthracis Ames \u201cAncestor\u201d","volume":"191","author":"Ravel","year":"2009","journal-title":"J Bacteriol"},{"key":"10.1002\/nmi2.62_bib13","doi-asserted-by":"crossref","first-page":"4116","DOI":"10.1128\/JB.00159-12","article-title":"Complete genome sequence of Bacillus anthracis H9401, an isolate from a Korean patient with anthrax","volume":"194","author":"Chun","year":"2012","journal-title":"J Bacteriol"},{"key":"10.1002\/nmi2.62_bib14","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1186\/1471-2180-4-21","article-title":"Multi\u2010pathogens sequence containing plasmids as positive controls for universal detection of potential agents of bioterrorism","volume":"4","author":"Charrel","year":"2004","journal-title":"BMC Microbiol"},{"key":"10.1002\/nmi2.62_bib15","volume":"54","author":"Le Minor","year":"1989"},{"key":"10.1002\/nmi2.62_bib16","doi-asserted-by":"crossref","first-page":"81","DOI":"10.1038\/nature01586","article-title":"The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria","volume":"423","author":"Read","year":"2003","journal-title":"Nature"},{"key":"10.1002\/nmi2.62_bib17","doi-asserted-by":"crossref","first-page":"477","DOI":"10.1186\/1471-2164-12-477","article-title":"An attenuated strain of Bacillus anthracis (CDC 684) has a large chromosomal inversion and altered growth kinetics","volume":"12","author":"Okinaka","year":"2011","journal-title":"BMC Genomics"},{"key":"10.1002\/nmi2.62_bib18","doi-asserted-by":"crossref","first-page":"D546","DOI":"10.1093\/nar\/gkq1102","article-title":"Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource","volume":"39","author":"Sun","year":"2011","journal-title":"Nucleic Acids Res"},{"key":"10.1002\/nmi2.62_bib19","doi-asserted-by":"crossref","first-page":"22","DOI":"10.1093\/nar\/29.1.22","article-title":"The COG database: new developments in phylogenetic classification of proteins from complete genomes","volume":"29","author":"Tatusov","year":"2001","journal-title":"Nucleic Acids Res"},{"key":"10.1002\/nmi2.62_bib20","doi-asserted-by":"crossref","first-page":"29","DOI":"10.1093\/nar\/27.1.29","article-title":"KEGG: Kyoto Encyclopedia Of Genes And Genomes","volume":"27","author":"Ogata","year":"1999","journal-title":"Nucleic Acids Res"},{"key":"10.1002\/nmi2.62_bib21","doi-asserted-by":"crossref","first-page":"W182","DOI":"10.1093\/nar\/gkm321","article-title":"KAAS: an automatic genome annotation and pathway reconstruction server","volume":"35","author":"Moriya","year":"2007","journal-title":"Nucleic Acids Res"},{"key":"10.1002\/nmi2.62_bib22","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1186\/1471-2164-9-75","article-title":"The RAST Server: rapid annotations using subsystems technology","volume":"9","author":"Aziz","year":"2008","journal-title":"BMC Genomics"},{"key":"10.1002\/nmi2.62_bib23","doi-asserted-by":"crossref","first-page":"W52","DOI":"10.1093\/nar\/gkm360","article-title":"CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats","volume":"35","author":"Grissa","year":"2007","journal-title":"Nucleic Acids Res"},{"key":"10.1002\/nmi2.62_bib24","doi-asserted-by":"crossref","first-page":"W347","DOI":"10.1093\/nar\/gkr485","article-title":"PHAST: a fast phage search tool","volume":"39","author":"Zhou","year":"2011","journal-title":"Nucleic Acids Res"},{"key":"10.1002\/nmi2.62_bib25","doi-asserted-by":"crossref","first-page":"374","DOI":"10.2144\/03342mt01","article-title":"TM4: a free, open\u2010source system for microarray data management and analysis","volume":"34","author":"Saeed","year":"2003","journal-title":"Biotechniques"},{"key":"10.1002\/nmi2.62_bib26","doi-asserted-by":"crossref","first-page":"134","DOI":"10.1016\/S0076-6879(06)11009-5","article-title":"TM4 microarray software suite","volume":"411","author":"Saeed","year":"2006","journal-title":"Methods Enzymol"},{"key":"10.1002\/nmi2.62_bib27","doi-asserted-by":"crossref","first-page":"e11147","DOI":"10.1371\/journal.pone.0011147","article-title":"progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement","volume":"5","author":"Darling","year":"2010","journal-title":"PLoS One"},{"key":"10.1002\/nmi2.62_bib28","doi-asserted-by":"crossref","first-page":"2731","DOI":"10.1093\/molbev\/msr121","article-title":"MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods","volume":"28","author":"Tamura","year":"2011","journal-title":"Mol Biol Evol"},{"key":"10.1002\/nmi2.62_bib29","doi-asserted-by":"crossref","first-page":"13536","DOI":"10.1073\/pnas.0403844101","article-title":"Phylogenetic discovery bias in Bacillus anthracis using single\u2010nucleotide polymorphisms from whole\u2010genome sequencing","volume":"101","author":"Pearson","year":"2004","journal-title":"Proc Natl Acad Sci USA"},{"key":"10.1002\/nmi2.62_bib30","doi-asserted-by":"crossref","first-page":"D363","DOI":"10.1093\/nar\/gkj123","article-title":"OrthoMCL\u2010DB: querying a comprehensive multi\u2010species collection of ortholog groups","volume":"34","author":"Chen","year":"2006","journal-title":"Nucleic Acids Res"},{"key":"10.1002\/nmi2.62_bib31","doi-asserted-by":"crossref","first-page":"19333","DOI":"10.1073\/pnas.1213199109","article-title":"Estimating divergence times in large molecular phylogenies","volume":"109","author":"Tamura","year":"2012","journal-title":"Proc Natl Acad Sci USA"},{"key":"10.1002\/nmi2.62_bib32","doi-asserted-by":"crossref","first-page":"17837","DOI":"10.1073\/pnas.0408026101","article-title":"Microevolution and history of the plague bacillus, Yersinia pestis","volume":"101","author":"Achtman","year":"2004","journal-title":"Proc Natl Acad Sci USA"},{"key":"10.1002\/nmi2.62_bib33","first-page":"108","article-title":"Anthrax and carbuncle: two sides of the same coin","volume":"11","author":"Mancini","year":"2003","journal-title":"Infez Med"},{"key":"10.1002\/nmi2.62_bib34","doi-asserted-by":"crossref","first-page":"1316","DOI":"10.1073\/pnas.0335853100","article-title":"The genome sequence of Clostridium tetani, the causative agent of tetanus disease","volume":"100","author":"Bruggemann","year":"2003","journal-title":"Proc Natl Acad Sci USA"},{"key":"10.1002\/nmi2.62_bib35","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1002\/2052-2975.27","article-title":"Genome of a chronic osteitis\u2010causing Clostridium tetani","volume":"2","author":"Fournier","year":"2014","journal-title":"New Microbes New Infect"},{"key":"10.1002\/nmi2.62_bib36","series-title":"CRISPR\u2010Cas Systems: RNA\u2010Mediated Adaptive Immunity in Bacteria and Archaea","first-page":"33","article-title":"Occurrence, diversity of CRISPR\u2010Cas systems and genotyping implications","author":"Pourcel","year":"2013"},{"key":"10.1002\/nmi2.62_bib37","doi-asserted-by":"crossref","first-page":"1685","DOI":"10.1128\/JB.01518-09","article-title":"Genome sequence of the deep\u2010rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium","volume":"192","author":"Eppinger","year":"2010","journal-title":"J Bacteriol"}],"container-title":["New Microbes and New Infections"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S205229751450056X?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S205229751450056X?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2019,8,15]],"date-time":"2019-08-15T14:37:30Z","timestamp":1565879850000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S205229751450056X"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,11]]},"references-count":37,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2014,11]]}},"alternative-id":["S205229751450056X"],"URL":"https:\/\/doi.org\/10.1002\/nmi2.62","relation":{},"ISSN":["2052-2975"],"issn-type":[{"value":"2052-2975","type":"print"}],"subject":[],"published":{"date-parts":[[2014,11]]}}}