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Historically, CCCs of the lower genital tract were associated with <jats:italic>in utero<\/jats:italic> diethylstilbestrol exposure; however, the genetic landscape of sporadic cCCCs remains unknown. Here we sought to define the molecular underpinning of cCCCs. Using a combination of whole\u2010exome, targeted capture, and RNA\u2010sequencing, we identified pathogenic genetic alterations in the Hippo signaling pathway in 50% (10\/20) of cCCCs, including recurrent <jats:italic>WWTR1<\/jats:italic> S89W somatic mutations in 40% (4\/10) of the cases harboring mutations in the Hippo pathway. Irrespective of the presence or absence of Hippo pathway genetic alterations, however, all primary cCCCs analyzed in this study (<jats:italic>n<\/jats:italic>\u2009=\u200920) harbored features of Hippo pathway deregulation at the transcriptomic and protein levels. <jats:italic>In vitro<\/jats:italic> functional analysis revealed that expression of the <jats:italic>WWTR1<\/jats:italic> S89W mutation leads to reduced binding of TAZ to 14\u20103\u20103, promoting constitutive nuclear translocation of TAZ and Hippo pathway repression. <jats:italic>WWTR1<\/jats:italic> S89W expression was found to lead to acquisition of oncogenic behavior, including increased proliferation, migration, and colony formation <jats:italic>in vitro<\/jats:italic> as well as increased tumorigenesis <jats:italic>in vivo<\/jats:italic>, which could be reversed by targeted inhibition of the TAZ\/YAP1 complex with verteporfin. Finally, xenografts expressing WWTR1 S89W displayed a shift in tumor phenotype, becoming more infiltrative as well as less differentiated, and were found to be composed of cells with conspicuous cytoplasmic clearing as compared to controls. Our results demonstrate that Hippo pathway alterations are likely drivers of cCCCs and likely contribute to the clear cell phenotype. Therapies targeting this pathway may constitute a new class of treatment for these rare, aggressive tumors. \u00a9 2022 The Pathological Society of Great Britain and Ireland.<\/jats:p>","DOI":"10.1002\/path.5910","type":"journal-article","created":{"date-parts":[[2022,4,12]],"date-time":"2022-04-12T08:02:43Z","timestamp":1649750563000},"page":"635-649","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":11,"title":["Recurrent <i>WWTR1<\/i><scp>S89W<\/scp> mutations and Hippo pathway deregulation in clear cell carcinomas of the cervix"],"prefix":"10.1002","volume":"257","author":[{"given":"Sarah H","family":"Kim","sequence":"first","affiliation":[{"name":"Department of Surgery Memorial Sloan Kettering Cancer Center  New York NY USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Thais","family":"Basili","sequence":"additional","affiliation":[{"name":"Department of Pathology and Laboratory Medicine Memorial Sloan Kettering Cancer Center  New York NY USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Higinio","family":"Dopeso","sequence":"additional","affiliation":[{"name":"Department of Pathology and Laboratory Medicine Memorial Sloan Kettering Cancer Center  New York NY USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Arnaud","family":"Da Cruz Paula","sequence":"additional","affiliation":[{"name":"Department of Surgery Memorial Sloan Kettering Cancer Center  New York NY USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rui","family":"Bi","sequence":"additional","affiliation":[{"name":"Department of Pathology and Laboratory Medicine Memorial Sloan Kettering Cancer Center  New York NY USA"},{"name":"Department of Pathology Fudan University Shanghai Cancer Center  Shanghai PR China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shirin","family":"Issa Bhaloo","sequence":"additional","affiliation":[{"name":"Department of 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Memorial Sloan Kettering Cancer Center  New York NY USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Timothy","family":"Hoang","sequence":"additional","affiliation":[{"name":"Department of Pathology and Laboratory Medicine Memorial Sloan Kettering Cancer Center  New York NY USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pier","family":"Selenica","sequence":"additional","affiliation":[{"name":"Department of Pathology and Laboratory Medicine Memorial Sloan Kettering Cancer Center  New York NY USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rajmohan","family":"Murali","sequence":"additional","affiliation":[{"name":"Department of Pathology and Laboratory Medicine Memorial Sloan Kettering Cancer Center  New York NY USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eric","family":"Chan","sequence":"additional","affiliation":[{"name":"Molecular Cytology Core Facility Memorial Sloan Kettering Cancer Center  New 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USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Carlos Gil","family":"Ferreira","sequence":"additional","affiliation":[{"name":"Oncoclinicas Institute for Research and Education  Sao Paulo Brazil"},{"name":"Federal University of Rio de Janeiro  Rio de Janeiro Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jose Roberto","family":"Lapa e Silva","sequence":"additional","affiliation":[{"name":"Federal University of Rio de Janeiro  Rio de Janeiro Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nadeem R","family":"Abu\u2010Rustum","sequence":"additional","affiliation":[{"name":"Department of Surgery Memorial Sloan Kettering Cancer Center  New York NY USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dmitriy","family":"Zamarin","sequence":"additional","affiliation":[{"name":"Department of Medicine Memorial Sloan Kettering Cancer Center  New York NY 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