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Some of these modifications are prerequisite for the normal functioning of cell, while other chemical modifications render the proteins as \u201cneo\u2010self\u201d antigens, which are recognized as \u201cnon\u2010self\u201d leading to aberrant cellular and humoral immune responses. However, these modifications could be a secondary effect of autoimmune diseases, as in the case of type I diabetes, hyperglycemia leads to protein glycation. The enigma of chemical modifications and immune response is akin to the \u201cchick\u2010and\u2010egg\u201d paradox. Nevertheless, chemical modifications regulate immune response. In some of the well\u2010known autoimmune diseases such as rheumatoid arthritis, systemic lupus erythematosus, and multiple sclerosis, chemically modified proteins act as autoantigens forming immune complexes. In some instances, chemical modifications are also involved in regulating immune response during pathogen infection. Further, the usefulness of proteomic analysis of immune complexes is briefly discussed.<\/jats:p>","DOI":"10.1002\/prca.201300068","type":"journal-article","created":{"date-parts":[[2013,12,24]],"date-time":"2013-12-24T03:28:24Z","timestamp":1387855704000},"page":"19-34","update-policy":"http:\/\/dx.doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":7,"title":["Immune response to chemically modified proteome"],"prefix":"10.1002","volume":"8","author":[{"given":"Shweta","family":"Bhat","sequence":"first","affiliation":[{"name":"Proteomics Facility Division of Biochemical Sciences CSIR\u2014National Chemical Laboratory  Pune India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sheon","family":"Mary","sequence":"additional","affiliation":[{"name":"Proteomics Facility Division of Biochemical Sciences CSIR\u2014National Chemical Laboratory  Pune India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Reema","family":"Banarjee","sequence":"additional","affiliation":[{"name":"Proteomics Facility Division of Biochemical Sciences CSIR\u2014National Chemical Laboratory  Pune India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ashok P.","family":"Giri","sequence":"additional","affiliation":[{"name":"Proteomics Facility Division of Biochemical Sciences CSIR\u2014National Chemical Laboratory  Pune India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mahesh J.","family":"Kulkarni","sequence":"additional","affiliation":[{"name":"Proteomics Facility Division of Biochemical Sciences CSIR\u2014National Chemical Laboratory  Pune India"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"311","published-online":{"date-parts":[[2014,2,5]]},"reference":[{"key":"e_1_2_9_2_1","volume-title":"Posttranslational Modification of Proteins: Expanding Nature's Inventory","author":"Walsh C.","year":"2005"},{"key":"e_1_2_9_3_1","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.274.32.22321"},{"key":"e_1_2_9_4_1","doi-asserted-by":"publisher","DOI":"10.1038\/172603a0"},{"key":"e_1_2_9_5_1","doi-asserted-by":"publisher","DOI":"10.1016\/0092-8674(87)90568-X"},{"key":"e_1_2_9_6_1","doi-asserted-by":"publisher","DOI":"10.1126\/science.169.3950.1042"},{"key":"e_1_2_9_7_1","doi-asserted-by":"publisher","DOI":"10.1084\/jem.165.2.302"},{"key":"e_1_2_9_8_1","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.iy.07.040189.002305"},{"key":"e_1_2_9_9_1","doi-asserted-by":"publisher","DOI":"10.1126\/science.2321019"},{"key":"e_1_2_9_10_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.coi.2011.12.003"},{"key":"e_1_2_9_11_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.coi.2004.09.001"},{"key":"e_1_2_9_12_1","doi-asserted-by":"publisher","DOI":"10.1146\/annurev.iy.11.040193.002155"},{"key":"e_1_2_9_13_1","volume-title":"Immunobiology: The Immune System in Health and Disease","author":"Janeway J.","year":"2001"},{"key":"e_1_2_9_14_1","doi-asserted-by":"publisher","DOI":"10.1373\/clinchem.2010.157776"},{"key":"e_1_2_9_15_1","first-page":"251","article-title":"Rheumatoid arthritis and systemic lupus erythematosus as immune complex diseases","volume":"67","author":"Weissmann G.","year":"2009","journal-title":"Bull NYU Hosp. 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