{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,3]],"date-time":"2026-10-03T21:16:51Z","timestamp":1791062211981,"version":"4.1.0"},"reference-count":8,"publisher":"Wiley","issue":"1","license":[{"start":{"date-parts":[[2003,5,13]],"date-time":"2003-05-13T00:00:00Z","timestamp":1052784000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Proteins"],"published-print":{"date-parts":[[2003,7]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>We present an evaluation of our results for the first Critical Assessment of PRedicted Interaction (CAPRI). The methods used include the molecular docking program DOT, shape analysis tool FADE, cluster analysis and filtering based on biological data. Good results were obtained for most of the seven CAPRI targets, and for two systems, submissions having the highest number of correctly predicted contacts were produced. Proteins 2003;52:33\u201340. \u00a9 2003 Wiley\u2010Liss, Inc.<\/jats:p>","DOI":"10.1002\/prot.10395","type":"journal-article","created":{"date-parts":[[2003,5,30]],"date-time":"2003-05-30T11:04:30Z","timestamp":1054292670000},"page":"33-40","source":"Crossref","is-referenced-by-count":16,"title":["Finding needles in haystacks: Reranking DOT results by using shape complementarity, cluster analysis, and biological information"],"prefix":"10.1002","volume":"52","author":[{"given":"Dennis S.","family":"Law","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lynn F.","family":"Ten Eyck","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Omer","family":"Katzenelson","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Igor","family":"Tsigelny","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Victoria A.","family":"Roberts","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mike E.","family":"Pique","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Julie C.","family":"Mitchell","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2003,5,13]]},"reference":[{"key":"e_1_2_7_2_2","doi-asserted-by":"publisher","DOI":"10.1093\/protein\/14.2.105"},{"key":"e_1_2_7_3_2","doi-asserted-by":"publisher","DOI":"10.1016\/S1093-3263(00)00079-6"},{"key":"e_1_2_7_4_2","doi-asserted-by":"crossref","unstructured":"Ten EyckLF MandellJ RobertsVA PiqueME. Surveying molecular interactions with DOT. In Proceedings of Supercomputing '95. IEEE 1995. http:\/\/www.supercomp.org\/sc95\/proceedings\/636.LTEN\/SC95.HTM.","DOI":"10.1145\/224170.224218"},{"key":"e_1_2_7_5_2","doi-asserted-by":"publisher","DOI":"10.1016\/0010-4655(91)90094-2"},{"key":"e_1_2_7_6_2","series-title":"DIMACS series in discrete mathematics and theoretical computer science","doi-asserted-by":"crossref","DOI":"10.1090\/dimacs\/026","author":"Johnson DS","year":"1996"},{"key":"e_1_2_7_7_2","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.052461499"},{"key":"e_1_2_7_8_2","doi-asserted-by":"publisher","DOI":"10.1074\/jbc.M202327200"},{"key":"e_1_2_7_9_2","volume-title":"Crystal structure of two superantigen from Streptococcus pyogenes complexed with their respective T cell receptor ligands reveal novel superantigen\u2010T cell receptor binding modes and a unique T cell signaling complex","author":"Li H","year":"2002"}],"container-title":["Proteins: Structure, Function, and Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.wiley.com\/onlinelibrary\/tdm\/v1\/articles\/10.1002%2Fprot.10395","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1002\/prot.10395","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,9,12]],"date-time":"2023-09-12T23:16:05Z","timestamp":1694560565000},"score":1,"resource":{"primary":{"URL":"https:\/\/onlinelibrary.wiley.com\/doi\/10.1002\/prot.10395"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2003,5,13]]},"references-count":8,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2003,7]]}},"alternative-id":["10.1002\/prot.10395"],"URL":"https:\/\/doi.org\/10.1002\/prot.10395","archive":["Portico"],"relation":{},"ISSN":["0887-3585","1097-0134"],"issn-type":[{"value":"0887-3585","type":"print"},{"value":"1097-0134","type":"electronic"}],"subject":[],"published":{"date-parts":[[2003,5,13]]}}}