{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,17]],"date-time":"2026-04-17T15:38:33Z","timestamp":1776440313565,"version":"3.51.2"},"reference-count":54,"publisher":"Wiley","issue":"3","license":[{"start":{"date-parts":[[2023,5,17]],"date-time":"2023-05-17T00:00:00Z","timestamp":1684281600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100005270","name":"Fujian Provincial Department of Science and Technology","doi-asserted-by":"publisher","award":["2020R1030005"],"award-info":[{"award-number":["2020R1030005"]}],"id":[{"id":"10.13039\/501100005270","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100018914","name":"Fujian Academy of Agricultural Sciences","doi-asserted-by":"publisher","award":["CXTD2021001\u20102"],"award-info":[{"award-number":["CXTD2021001\u20102"]}],"id":[{"id":"10.13039\/501100018914","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["acsess.onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["The Plant Genome"],"published-print":{"date-parts":[[2023,9]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>\n                    A weak codon usage bias was found in\n                    <jats:italic>Dendrobium catenatum<\/jats:italic>\n                    (\n                    <jats:italic>D. officiale<\/jats:italic>\n                    ) antimicrobial peptides (AMPs), after the analysis of relative synonymous codon usage, GC contents, and the effective number of codons. The codon usage preference was mainly influenced by natural selection pressure. The self\u2010optimized prediction method and SWISS\u2010MODEL were applied for peptide structural and domain analyses, and some typical antimicrobial domains were found in\n                    <jats:italic>D. officinale<\/jats:italic>\n                    AMP amino sequences, such as knot1 domain, gibberellins\u2010stimulated domain, cupin_1 domain, defensin_like domain, and SLR1\u2010BP (S locus\u2010related glycoprotein 1 binding pollen coat protein) domain. To investigate the AMPs gene expression pattern, abiotic stresses, such as salt stress, drought stress, salicylic acid (SA), and methyl jasmonate (JA), were applied and the gene expression levels were detected by the real\u2010time fluorescent quantitative polymerase chain reaction. Results showed that, even though the basic AMPs gene expressions were low, some AMPs can still be induced by salt dress, while the drought dress did not show the same impact. The SA and JA signaling pathways might be involved in most of the AMPs expressions. The natural selection of the\n                    <jats:italic>D. officinale<\/jats:italic>\n                    AMPs and thus forming diverse types of AMPs enhanced the plant's innate immunity and disease resistance capability, which would lead to a better understanding of the molecular mechanism for\n                    <jats:italic>D. officinale<\/jats:italic>\n                    adapting to the environment. The finding that salt stress, SA, and JA signaling pathways can induce AMP expression lays a foundation for the further development and functional verification of\n                    <jats:italic>D. officinale<\/jats:italic>\n                    AMPs.\n                  <\/jats:p>","DOI":"10.1002\/tpg2.20348","type":"journal-article","created":{"date-parts":[[2023,5,17]],"date-time":"2023-05-17T03:46:39Z","timestamp":1684295199000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":8,"title":["Antimicrobial peptides in\n                    <i>Dendrobium officinale<\/i>\n                    : Genomic parameters, peptide structures, and gene expression patterns"],"prefix":"10.1002","volume":"16","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-0797-7845","authenticated-orcid":false,"given":"Huiming","family":"Huang","sequence":"first","affiliation":[{"name":"Institute of Subtropical Agriculture Fujian Academy of Agricultural Sciences  Zhangzhou Fujian China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wen\u2010Yee","family":"Lee","sequence":"additional","affiliation":[{"name":"Department of Chemistry and Biochemistry The University of Texas at El Paso  El Paso Texas USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hui","family":"Zou","sequence":"additional","affiliation":[{"name":"Institute of Subtropical Agriculture Fujian Academy of Agricultural Sciences  Zhangzhou Fujian China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Haiming","family":"Li","sequence":"additional","affiliation":[{"name":"Institute of Subtropical Agriculture Fujian Academy of Agricultural Sciences  Zhangzhou Fujian China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shuhe","family":"Zhang","sequence":"additional","affiliation":[{"name":"Institute of Subtropical Agriculture Fujian Academy of Agricultural Sciences  Zhangzhou Fujian China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Heping","family":"Li","sequence":"additional","affiliation":[{"name":"Institute of Subtropical Agriculture Fujian Academy of Agricultural Sciences  Zhangzhou Fujian China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jiangbo","family":"Lin","sequence":"additional","affiliation":[{"name":"Institute of Subtropical Agriculture Fujian Academy of Agricultural Sciences  Zhangzhou Fujian China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"311","published-online":{"date-parts":[[2023,5,17]]},"reference":[{"key":"e_1_2_9_2_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.micres.2018.04.008"},{"key":"e_1_2_9_3_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1744-7909.2011.01043.x"},{"key":"e_1_2_9_4_1","doi-asserted-by":"publisher","DOI":"10.1002\/pro.757"},{"key":"e_1_2_9_5_1","doi-asserted-by":"publisher","DOI":"10.3390\/ph6121543"},{"key":"e_1_2_9_6_1","doi-asserted-by":"publisher","DOI":"10.1111\/mpp.12299"},{"key":"e_1_2_9_7_1","doi-asserted-by":"publisher","DOI":"10.1080\/07352689709701952"},{"key":"e_1_2_9_8_1","doi-asserted-by":"publisher","DOI":"10.1016\/S1360\u20101385(00)01759\u20103"},{"key":"e_1_2_9_9_1","doi-asserted-by":"publisher","DOI":"10.2174\/0929866053405832"},{"key":"e_1_2_9_10_1","doi-asserted-by":"publisher","DOI":"10.1016\/S0014-5793(97)00055-0"},{"key":"e_1_2_9_11_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.fbr.2012.10.002"},{"issue":"10","key":"e_1_2_9_12_1","first-page":"2289","article-title":"Antitumor and antimicrobial activities and inhibition of in\u2010vitro lipid peroxidation by Dendrobium nobile","volume":"8","author":"Devi P. 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