{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,14]],"date-time":"2026-07-14T07:27:38Z","timestamp":1784014058637,"version":"3.55.0"},"reference-count":70,"publisher":"Wiley","issue":"3","license":[{"start":{"date-parts":[[2024,8,27]],"date-time":"2024-08-27T00:00:00Z","timestamp":1724716800000},"content-version":"am","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"},{"start":{"date-parts":[[2024,8,27]],"date-time":"2024-08-27T00:00:00Z","timestamp":1724716800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["IOS\u20101444499"],"award-info":[{"award-number":["IOS\u20101444499"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100008065","name":"Georgia Research Alliance","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100008065","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100007699","name":"University of Georgia","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100007699","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["acsess.onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["The Plant Genome"],"published-print":{"date-parts":[[2024,9]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>\n                    <jats:italic>Salvia hispanica<\/jats:italic>\n                    L. (Chia), a member of the Lamiaceae, is an economically important crop in Mesoamerica, with health benefits associated with its seed fatty acid composition. Chia varieties are distinguished based on seed color including mixed white and black (Chia pinta) and black (Chia negra). To facilitate research on Chia and expand on comparative analyses within the Lamiaceae, we generated a chromosome\u2010scale assembly of a Chia pinta accession and performed comparative genome analyses with a previously published Chia negra genome assembly. The Chia pinta and Chia negra genome sequences were highly similar as shown by a limited number of single nucleotide polymorphisms and extensive shared orthologous gene membership. However, there is an enrichment of terpene synthases in the Chia pinta genome relative to the Chia negra genome. We sequenced and analyzed the genomes of 20 Chia accessions with differing seed color and geographic origin revealing population structure within\n                    <jats:italic>S. hispanica<\/jats:italic>\n                    and interspecific introgressions of\n                    <jats:italic>Salvia<\/jats:italic>\n                    species. As the genus\n                    <jats:italic>Salvia<\/jats:italic>\n                    is polyphyletic, its evolutionary history remains unclear. Using large\u2010scale synteny analysis within the Lamiaceae and orthologous group membership, we resolved the phylogeny of\n                    <jats:italic>Salvia<\/jats:italic>\n                    species. This study and its collective resources further our understanding of genomic diversity in this food crop and the extent of interspecies hybridizations in\n                    <jats:italic>Salvia<\/jats:italic>\n                    .\n                  <\/jats:p>","DOI":"10.1002\/tpg2.20494","type":"journal-article","created":{"date-parts":[[2024,8,28]],"date-time":"2024-08-28T02:14:16Z","timestamp":1724811256000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":4,"title":["Chromosome\u2010scale\n                    <i>Salvia hispanica<\/i>\n                    L. (Chia) genome assembly reveals rampant\n                    <i>Salvia<\/i>\n                    interspecies introgression"],"prefix":"10.1002","volume":"17","author":[{"given":"Julia","family":"Brose","sequence":"first","affiliation":[{"name":"Department of Plant Biology Michigan State University  East Lansing Michigan USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"John P.","family":"Hamilton","sequence":"additional","affiliation":[{"name":"Center for Applied Genetic Technologies University of Georgia  Athens Georgia USA"},{"name":"Department of Crop and Soil Sciences University of Georgia  Athens Georgia USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nicholas","family":"Schlecht","sequence":"additional","affiliation":[{"name":"Department of Biochemistry and Molecular Biology Michigan State University  East Lansing Michigan USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dongyan","family":"Zhao","sequence":"additional","affiliation":[{"name":"Department of Plant Biology Michigan State University  East Lansing Michigan USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Paulina M.","family":"Mej\u00eda\u2010Ponce","sequence":"additional","affiliation":[{"name":"National Laboratory for Genomics of Biodiversity (UGA\u2010Langebio), CINVESTAV  Irapuato Mexico"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0005-7805-6682","authenticated-orcid":false,"given":"Arely","family":"Cruz\u2010P\u00e9rez","sequence":"additional","affiliation":[{"name":"National Laboratory for Genomics of Biodiversity (UGA\u2010Langebio), CINVESTAV  Irapuato Mexico"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Brieanne","family":"Vaillancourt","sequence":"additional","affiliation":[{"name":"Center for Applied Genetic Technologies University of Georgia  Athens Georgia USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Joshua C.","family":"Wood","sequence":"additional","affiliation":[{"name":"Center for Applied Genetic Technologies University of Georgia  Athens Georgia USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Patrick P.","family":"Edger","sequence":"additional","affiliation":[{"name":"Department of Horticulture Michigan State University  East Lansing Michigan USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Salvador","family":"Montes\u2010Hernandez","sequence":"additional","affiliation":[{"name":"Campo Experimental Baj\u00edo, Instituto Nacional de Investigaciones Forestales, Agr\u00edcolas y Pecuarias  Celaya M\u00e9xico"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Guillermo Orozco","family":"de Rosas","sequence":"additional","affiliation":[{"name":"CHIABLANCA SC DE RL  Acatic Mexico"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bj\u00f6rn","family":"Hamberger","sequence":"additional","affiliation":[{"name":"Department of Biochemistry and Molecular Biology Michigan State University  East Lansing Michigan USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7974-455X","authenticated-orcid":false,"given":"Ang\u00e9lica","family":"Cibrian\u2010Jaramillo","sequence":"additional","affiliation":[{"name":"National Laboratory for Genomics of Biodiversity (UGA\u2010Langebio), CINVESTAV  Irapuato Mexico"},{"name":"Naturalis Biodiversity Center  Leiden The Netherlands"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6727-4677","authenticated-orcid":false,"given":"C. Robin","family":"Buell","sequence":"additional","affiliation":[{"name":"Center for Applied Genetic Technologies University of Georgia  Athens Georgia USA"},{"name":"Department of Crop and Soil Sciences University of Georgia  Athens Georgia USA"},{"name":"Institute of Plant Breeding, Genetics, and Genomics University of Georgia  Athens Georgia USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2024,8,27]]},"reference":[{"key":"e_1_2_10_2_1","doi-asserted-by":"publisher","DOI":"10.1038\/s42003\u2010023\u201005192\u20104"},{"key":"e_1_2_10_3_1","unstructured":"Alexa A. &Rahnenfuhrer J.(2010).topGO: Enrichment analysis for gene ontology(R package version 2.0) [Computer 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