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This study investigates genetic variation among these cytotypes in relation to ploidy levels and reproductive modes. To this end, a panel of accessions was assembled to capture the species\u2019 intraspecific diversity. The panel was used to construct a whole\u2010genome sequencing\u2010based linear pangenome by iteratively mapping Illumina short reads and de novo assembling unmapped reads, thereby expanding the available reference genome and improving the representation of the species\u2019 gene pool. The panel and the resulting pangenome were then used for gene content detection, functional annotation, and variant calling. Using this approach, extensive variation in gene content was observed among\n                    <jats:italic>E. curvula<\/jats:italic>\n                    accessions, with polyploid cytotypes containing a higher fraction of newly assembled pangenome sequences than diploids. In addition, candidate genes associated with polyploidization and apomixis were identified. Polyploid\u2010associated genes were mainly associated with cell\u2010cycle regulation and DNA replication, whereas apomixis\u2010associated genes were mainly associated with post\u2010transcriptional regulation. Moreover, phylogenetic relationships among cytotypes were inferred, and allele\u2010frequency distributions revealed ploidy\u2010associated differences among accessions. Thus, this work identified candidate genes associated with polyploidy and apomictic reproduction, highlighting ploidy\u2010associated changes in gene content and post\u2010transcriptional regulatory processes and providing insights into how polyploidization and reproductive shifts have shaped genome evolution in this agamic grass species.\n                  <\/jats:p>","DOI":"10.1002\/tpg2.70303","type":"journal-article","created":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T10:00:12Z","timestamp":1789984812000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["A pangenome\u2010based approach reveals genes associated with polyploidy and apomixis in\n                    <i>Eragrostis curvula<\/i>"],"prefix":"10.1002","volume":"19","author":[{"ORCID":"https:\/\/orcid.org\/0009-0005-9614-3712","authenticated-orcid":false,"given":"Giacomo","family":"Bongiorno","sequence":"first","affiliation":[{"name":"Department 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