{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,28]],"date-time":"2026-09-28T11:56:21Z","timestamp":1790596581282,"version":"4.1.0"},"reference-count":58,"publisher":"Wiley","issue":"4","license":[{"start":{"date-parts":[[2026,9,28]],"date-time":"2026-09-28T00:00:00Z","timestamp":1790553600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"},{"start":{"date-parts":[[2026,9,28]],"date-time":"2026-09-28T00:00:00Z","timestamp":1790553600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/doi.wiley.com\/10.1002\/tdm_license_1.1"}],"funder":[{"DOI":"10.13039\/100000199","name":"U.S. Department of Agriculture","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000199","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100007917","name":"Agricultural Research Service","doi-asserted-by":"publisher","award":["6054\u201021000\u2010019\u201000D"],"award-info":[{"award-number":["6054\u201021000\u2010019\u201000D"]}],"id":[{"id":"10.13039\/100007917","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100007917","name":"Agricultural Research Service","doi-asserted-by":"publisher","award":["6064\u201021000\u2010017\u201000D"],"award-info":[{"award-number":["6064\u201021000\u2010017\u201000D"]}],"id":[{"id":"10.13039\/100007917","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["acsess.onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["The Plant Genome"],"published-print":{"date-parts":[[2026,12]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>\n                    One strategy for increasing the genetic diversity of upland cotton (\n                    <jats:italic>Gossypium hirsutum<\/jats:italic>\n                    ) involves the introgression of beneficial alleles from related and wild tetraploid species. Progress in this area has been limited due to undesirable outcomes associated with whole genome interspecific hybridization. To minimize genetic influences from other chromosomes, chromosome substitution lines (CSLs) were developed in upland cotton TM\u20101 using\n                    <jats:italic>Gossypium barbadens<\/jats:italic>\n                    e (GB),\n                    <jats:italic>Gossypium mustelinum<\/jats:italic>\n                    (GM), and\n                    <jats:italic>Gossypium tomentosum<\/jats:italic>\n                    (GT) as donor species. A multiparent advanced generation intercross (MAGIC) population comprising 797 recombinant inbred lines (RILs) was developed by crossing 32 CSLs with five upland cotton cultivars. Whole\u2010genome sequencing of all parental lines and MAGIC RILs was performed to assess alien genome introgressions. Of the 32 CSLs, 28 exhibited targeted chromosome substitutions, although residual alien genome introgressions were prevalent across all lines. Among the 797 MAGIC RILs, 794 displayed varying levels of introgressed segments, with each RIL containing introgressions in an average of nine chromosomes. GB\u2010derived introgressions predominated in 356 RILs, suggesting that GB alleles outcompeted GM or GT alleles during population development. Kinship analysis revealed a clear structure within the MAGIC population, which could be categorized into four groups. Despite five cycles of random mating, large alien genome segments persisted in many RILs, highlighting a continuing challenge posed by linkage drag in interspecific hybridization. This study offers new perspectives on the complexities of utilizing wild species in cotton improvement and provides valuable genetic materials for future breeding efforts.\n                  <\/jats:p>","DOI":"10.1002\/tpg2.70308","type":"journal-article","created":{"date-parts":[[2026,9,28]],"date-time":"2026-09-28T11:08:07Z","timestamp":1790593687000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Genomic characterization of a MAGIC population containing introgressions from four tetraploid\n                    <i>Gossypium<\/i>\n                    species"],"prefix":"10.1002","volume":"19","author":[{"ORCID":"https:\/\/orcid.org\/0009-0006-7166-4850","authenticated-orcid":false,"given":"Ganesh","family":"Pinnika","sequence":"first","affiliation":[{"name":"USDA\u2010ARS Southern Regional Research Center Cotton Fiber Bioscience &amp; Utilization Research Unit  New Orleans Louisiana USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ping","family":"Li","sequence":"additional","affiliation":[{"name":"USDA\u2010ARS Southern Regional Research Center Cotton Fiber Bioscience &amp; Utilization Research Unit  New Orleans Louisiana USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jack C.","family":"McCarty","sequence":"additional","affiliation":[{"name":"USDA\u2010ARS Genetics &amp; Sustainable Agriculture Research Unit  Mississippi State Mississippi USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Johnie N.","family":"Jenkins","sequence":"additional","affiliation":[{"name":"USDA\u2010ARS Genetics &amp; Sustainable Agriculture Research Unit  Mississippi State Mississippi USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0036-5459","authenticated-orcid":false,"given":"David D.","family":"Fang","sequence":"additional","affiliation":[{"name":"USDA\u2010ARS Southern Regional Research Center Cotton Fiber Bioscience &amp; Utilization Research Unit  New Orleans Louisiana USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2026,9,28]]},"reference":[{"key":"e_1_2_11_2_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.sjbs.2021.09.009"},{"key":"e_1_2_11_3_1","doi-asserted-by":"publisher","DOI":"10.1534\/g3.120.401125"},{"key":"e_1_2_11_4_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41588\u2010020\u20100614\u20105"},{"key":"e_1_2_11_5_1","doi-asserted-by":"crossref","first-page":"45","DOI":"10.1093\/oxfordjournals.jhered.a109309","article-title":"Identification of ten chromosome deficiencies in cotton","volume":"71","author":"Endrizzi J. E.","year":"1980","journal-title":"Journal of Heredity"},{"key":"e_1_2_11_6_1","doi-asserted-by":"crossref","first-page":"81","DOI":"10.2134\/agronmonogr24.c4","volume-title":"Cotton","author":"Endrizzi J. E.","year":"1984"},{"key":"e_1_2_11_7_1","first-page":"121","article-title":"Cotton germplasm diversity and its importance to cultivar development","volume":"2","author":"Esbroeck G.","year":"1998","journal-title":"Journal of Cotton Science"},{"key":"e_1_2_11_8_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00122\u2010012\u20101956\u2010x"},{"key":"e_1_2_11_9_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00122\u2010014\u20102372\u20101"},{"key":"e_1_2_11_10_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00438\u2010022\u201001974\u20103"},{"key":"e_1_2_11_11_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00122\u2010009\u20101223\u2010y"},{"key":"e_1_2_11_12_1","doi-asserted-by":"publisher","DOI":"10.1186\/1471\u20102164\u201015\u2010838"},{"key":"e_1_2_11_13_1","doi-asserted-by":"publisher","DOI":"10.1600\/036364417X694593"},{"key":"e_1_2_11_14_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41588\u2010021\u201000844\u20109"},{"key":"e_1_2_11_15_1","unstructured":"Hitzelberger J. C.(2022).Development and characterization of chromosome substitution and chromosome segment substitution lines in cotton (Gossypium spp.)[Doctoral dissertation Texas A&M University]."},{"key":"e_1_2_11_16_1","unstructured":"Hudson D. &Liu B.(2025).Global cotton outlook 2025\/26\u20132034\/35.https:\/\/www.depts.ttu.edu\/aaec\/icac\/pubs\/cotton\/global_cotton_baselines\/Cotton_Outlook_2025.pdf"},{"key":"e_1_2_11_17_1","doi-asserted-by":"publisher","DOI":"10.1186\/s12864\u2010016\u20103249\u20102"},{"key":"e_1_2_11_18_1","doi-asserted-by":"publisher","DOI":"10.3198\/jpr2008.02.0080crg"},{"key":"e_1_2_11_19_1","doi-asserted-by":"publisher","DOI":"10.3198\/jpr2019.05.0024crg"},{"key":"e_1_2_11_20_1","doi-asserted-by":"crossref","first-page":"561","DOI":"10.2135\/cropsci2006.06.0396","article-title":"Genetic effects of thirteen Gossypium barbadense L. chromosome substitution lines in topcrosses with upland cotton cultivars: II. Fiber quality traits","volume":"47","author":"Jenkins J. 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TM\u20101 on agronomic and fiber traits","volume":"8","author":"Saha S.","year":"2004","journal-title":"Journal of Cotton Science"},{"key":"e_1_2_11_40_1","doi-asserted-by":"publisher","DOI":"10.3390\/plants11040542"},{"key":"e_1_2_11_41_1","doi-asserted-by":"publisher","DOI":"10.1038\/s41437\u2010020\u20100336\u20106"},{"key":"e_1_2_11_42_1","doi-asserted-by":"publisher","DOI":"10.1016\/j.ygeno.2021.04.036"},{"key":"e_1_2_11_43_1","doi-asserted-by":"publisher","DOI":"10.3389\/fpls.2025.1707011"},{"key":"e_1_2_11_44_1","volume-title":"Numerical taxonomy: The principles and practice of numerical classification","author":"Sneath P. H. 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