{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,29]],"date-time":"2026-09-29T12:05:43Z","timestamp":1790683543701,"version":"4.1.0"},"reference-count":189,"publisher":"Wiley","issue":"4","license":[{"start":{"date-parts":[[2026,9,29]],"date-time":"2026-09-29T00:00:00Z","timestamp":1790640000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"},{"start":{"date-parts":[[2026,9,29]],"date-time":"2026-09-29T00:00:00Z","timestamp":1790640000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/doi.wiley.com\/10.1002\/tdm_license_1.1"}],"funder":[{"DOI":"10.13039\/501100021251","name":"Australian Research Council Centre of Excellence for Plant Success in Nature and Agriculture","doi-asserted-by":"publisher","award":["CE200100015"],"award-info":[{"award-number":["CE200100015"]}],"id":[{"id":"10.13039\/501100021251","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["acsess.onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["The Plant Genome"],"published-print":{"date-parts":[[2026,12]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>\n                    The wild relatives of rice (\n                    <jats:italic>Oryza sativa<\/jats:italic>\n                    L.) represent reservoirs of genetic diversity and potential sources of novel pest and disease resistance. The recent availability of high\u2010quality\n                    <jats:italic>Oryza<\/jats:italic>\n                    genome assemblies has enabled greater exploration of this diversity across the genus. This study aimed to identify and characterize novel disease resistance gene candidates across these wild species. A total of 24\u00a0assembled\n                    <jats:italic>Oryza<\/jats:italic>\n                    genomes and proteomes from both wild and cultivated species were analyzed. Putative homologues to functionally validated, cloned disease resistance (CDR) genes in rice were identified using basic local alignment searches with BLASTp and designated into classes with RGAugury. Homologue characterization analyses, including physical distribution, clustering, gene duplication, phylogenies, and domain structure for NBS\u2010LRR (NLR)\u2010like homologues, were also conducted. A total of 2460 homologues to CDR genes were identified. Homologue abundance was generally highest in cultivated rices, followed by wild AA species and non\u2010AA taxa, with no clear relationship to genome or chromosome size. In allotetraploids, CDR homologues were more abundant in CC sub\u2010genomes, consistent with broader patterns of preferential gene retention. Most homologues were designated as NLRs or receptor\u2010like kinases, which were also the gene classes most frequently associated with duplication. Atypical resistance genes were often designated as singletons or segmental genes. Nucleotide\u2010binding site domain analyses revealed conserved motifs across the genus. Discordance between gene phylogenies and the\n                    <jats:italic>Oryza<\/jats:italic>\n                    species tree suggests complex evolutionary histories across resistance\u2010associated gene families. Overall, this study provides an insight into disease resistance gene diversity across the\n                    <jats:italic>Oryza<\/jats:italic>\n                    genus and highlights loci that warrant further investigation for future rice breeding.\n                  <\/jats:p>","DOI":"10.1002\/tpg2.70312","type":"journal-article","created":{"date-parts":[[2026,9,29]],"date-time":"2026-09-29T11:36:31Z","timestamp":1790681791000},"update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Genome\u2010wide prediction of cloned disease resistance homologues across the\n                    <i>Oryza<\/i>\n                    genus"],"prefix":"10.1002","volume":"19","author":[{"ORCID":"https:\/\/orcid.org\/0009-0004-8287-084X","authenticated-orcid":false,"given":"Sabrina","family":"Morrison","sequence":"first","affiliation":[{"name":"Queensland Alliance for Agriculture and Food Innovation University of Queensland  Brisbane Queensland Australia"},{"name":"ARC Centre of Excellence for Plant Success in Nature and Agriculture University of Queensland  Brisbane Queensland Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5391-5824","authenticated-orcid":false,"given":"Jacqueline","family":"Batley","sequence":"additional","affiliation":[{"name":"School of Biological Sciences University of Western Australia Crawley Western Australia Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0002-4532-7464","authenticated-orcid":false,"given":"Ian Paul","family":"Navea","sequence":"additional","affiliation":[{"name":"Rice Breeding Innovation Department International Rice Research Institute  Los Ba\u00f1os Laguna Philippines"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0709-2783","authenticated-orcid":false,"given":"Van","family":"Schepler\u2010Luu","sequence":"additional","affiliation":[{"name":"Rice Breeding Innovation Department International Rice Research Institute  Los Ba\u00f1os Laguna Philippines"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4060-0292","authenticated-orcid":false,"given":"Robert J.","family":"Henry","sequence":"additional","affiliation":[{"name":"ARC Centre of Excellence for Plant Success in Nature and Agriculture University of Queensland  Brisbane Queensland Australia"},{"name":"Big Data Research Institute VinUniversity  Hanoi Vietnam"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"311","published-online":{"date-parts":[[2026,9,29]]},"reference":[{"key":"e_1_2_10_2_1","doi-asserted-by":"publisher","DOI":"10.1186\/s12864\u2010025\u201011246\u20100"},{"key":"e_1_2_10_3_1","doi-asserted-by":"publisher","DOI":"10.1007\/s00239\u2010002\u20102355\u20108"},{"key":"e_1_2_10_4_1","doi-asserted-by":"publisher","DOI":"10.1111\/j.1365\u2010313X.2006.02792.x"},{"issue":"5","key":"e_1_2_10_5_1","doi-asserted-by":"crossref","first-page":"1151","DOI":"10.3390\/math11051151","article-title":"Analysis and optimal control of the tungro virus disease spread model in rice plants by considering the characteristics of the virus, roguing, and pesticides","volume":"11","author":"Amelia R.","year":"2023","journal-title":"Mathematics"},{"key":"e_1_2_10_6_1","doi-asserted-by":"publisher","DOI":"10.1534\/genetics.108.095034"},{"issue":"1","key":"e_1_2_10_7_1","first-page":"57","article-title":"Allele mining strategies: Principles and utilisation for blast resistance genes in rice (Oryza sativa L.)","volume":"17","author":"Ashkani S.","year":"2015","journal-title":"Current Issues in Molecular 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