{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,13]],"date-time":"2026-03-13T21:01:07Z","timestamp":1773435667643,"version":"3.50.1"},"reference-count":25,"publisher":"Wiley","issue":"8","license":[{"start":{"date-parts":[[2012,5,11]],"date-time":"2012-05-11T00:00:00Z","timestamp":1336694400000},"content-version":"vor","delay-in-days":40,"URL":"http:\/\/onlinelibrary.wiley.com\/termsAndConditions#vor"}],"funder":[{"name":"National Institutes of Health-National Human Genome Research Institute","award":["HG005805"],"award-info":[{"award-number":["HG005805"]}]},{"name":"Duchy of Luxembourg Systems Biology initiative"},{"DOI":"10.13039\/100000057","name":"National Institute of General Medical Sciences","doi-asserted-by":"crossref","award":["R01 GM087221"],"award-info":[{"award-number":["R01 GM087221"]}],"id":[{"id":"10.13039\/100000057","id-type":"DOI","asserted-by":"crossref"}]},{"DOI":"10.13039\/501100001711","name":"Swiss National Science Foundation","doi-asserted-by":"crossref","award":["31000-10767"],"award-info":[{"award-number":["31000-10767"]}],"id":[{"id":"10.13039\/501100001711","id-type":"DOI","asserted-by":"crossref"}]},{"name":"European Research Council","award":["ERC-2008-AdG 233226"],"award-info":[{"award-number":["ERC-2008-AdG 233226"]}]}],"content-domain":{"domain":["analyticalsciencejournals.onlinelibrary.wiley.com"],"crossmark-restriction":true},"short-container-title":["Proteomics"],"published-print":{"date-parts":[[2012,4]]},"abstract":"<jats:p>Public repositories for proteomics data have accelerated proteomics research by enabling more efficient cross\u2010analyses of datasets, supporting the creation of protein and peptide compendia of experimental results, supporting the development and testing of new software tools, and facilitating the manuscript review process. The repositories available to date have been designed to accommodate either shotgun experiments or generic proteomic data files. Here, we describe a new kind of proteomic data repository for the collection and representation of data from selected reaction monitoring (<jats:styled-content style=\"fixed-case\">SRM<\/jats:styled-content>) measurements. The <jats:styled-content style=\"fixed-case\">P<\/jats:styled-content>eptide<jats:styled-content style=\"fixed-case\">A<\/jats:styled-content>tlas <jats:styled-content style=\"fixed-case\">SRM E<\/jats:styled-content>xperiment <jats:styled-content style=\"fixed-case\">L<\/jats:styled-content>ibrary (<jats:styled-content style=\"fixed-case\">PASSEL<\/jats:styled-content>) allows researchers to easily submit proteomic data sets generated by <jats:styled-content style=\"fixed-case\">SRM<\/jats:styled-content>. The raw data are automatically processed in a uniform manner and the results are stored in a database, where they may be downloaded or browsed via a web interface that includes a chromatogram viewer. <jats:styled-content style=\"fixed-case\">PASSEL<\/jats:styled-content>enables cross\u2010analysis of <jats:styled-content style=\"fixed-case\">SRM<\/jats:styled-content>data, supports optimization of <jats:styled-content style=\"fixed-case\">SRM<\/jats:styled-content>data collection, and facilitates the review process of <jats:styled-content style=\"fixed-case\">SRM<\/jats:styled-content>data. Further, <jats:styled-content style=\"fixed-case\">PASSEL<\/jats:styled-content>will help in the assessment of proteotypic peptide performance in a wide array of samples containing the same peptide, as well as across multiple experimental protocols.<\/jats:p>","DOI":"10.1002\/pmic.201100515","type":"journal-article","created":{"date-parts":[[2012,2,9]],"date-time":"2012-02-09T07:38:13Z","timestamp":1328773093000},"page":"1170-1175","update-policy":"https:\/\/doi.org\/10.1002\/crossmark_policy","source":"Crossref","is-referenced-by-count":200,"title":["<scp>PASSEL<\/scp>: The <scp>P<\/scp>eptide<scp>A<\/scp>tlas <scp>SRM<\/scp>experiment library"],"prefix":"10.1002","volume":"12","author":[{"given":"Terry","family":"Farrah","sequence":"first","affiliation":[{"name":"Institute for Systems Biology  Seattle WA USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Eric W.","family":"Deutsch","sequence":"additional","affiliation":[{"name":"Institute for Systems Biology  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