{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,15]],"date-time":"2026-07-15T05:08:53Z","timestamp":1784092133008,"version":"3.55.0"},"publisher-location":"Cham","reference-count":198,"publisher":"Springer Nature Switzerland","isbn-type":[{"value":"9783032087362","type":"print"},{"value":"9783032087379","type":"electronic"}],"license":[{"start":{"date-parts":[[2025,1,1]],"date-time":"2025-01-01T00:00:00Z","timestamp":1735689600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2025,1,1]],"date-time":"2025-01-01T00:00:00Z","timestamp":1735689600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2025]]},"DOI":"10.1007\/10_2025_288","type":"book-chapter","created":{"date-parts":[[2025,9,8]],"date-time":"2025-09-08T11:22:37Z","timestamp":1757330557000},"page":"1-25","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Exploitation of Biodiversity in Bioeconomy: Examples, Opportunities, and Challenges"],"prefix":"10.1007","author":[{"given":"Alexander","family":"Gr\u00fcnberger","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Emily","family":"Schepp","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Selina","family":"Lang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kevin Edward","family":"Schulz","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Daniel Baron","family":"Diaz","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Arabi","family":"Sivanesapillai","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Andreas","family":"Diepold","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Camilla","family":"Stolle","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kersten","family":"Rabe","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Roland","family":"Ulber","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dirk","family":"Holtmann","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2025,9,9]]},"reference":[{"issue":"3","key":"288_CR1","doi-asserted-by":"publisher","first-page":"111","DOI":"10.1016\/j.tibtech.2009.11.006","volume":"28","author":"BK Singh","year":"2010","unstructured":"Singh BK (2010) Exploring microbial diversity for biotechnology: the way forward. Trends Biotechnol 28(3):111\u2013116","journal-title":"Trends Biotechnol"},{"issue":"21","key":"288_CR2","doi-asserted-by":"publisher","first-page":"5970","DOI":"10.1073\/pnas.1521291113","volume":"113","author":"KJ Locey","year":"2016","unstructured":"Locey KJ, Lennon JT (2016) Scaling laws predict global microbial diversity. Proc Natl Acad Sci 113(21):5970\u20135975","journal-title":"Proc Natl Acad Sci"},{"key":"288_CR3","doi-asserted-by":"crossref","unstructured":"Microbiology by numbers (2011). Nat Rev Microbiol 9(9):628","DOI":"10.1038\/nrmicro2644"},{"issue":"2","key":"288_CR4","first-page":"81","volume":"95","author":"W Wade","year":"2002","unstructured":"Wade W (2002) Unculturable bacteria \u2013 the uncharacterized organisms that cause oral infections. J R Soc Med 95(2):81\u201383","journal-title":"J R Soc Med"},{"key":"288_CR5","volume-title":"Vorl\u00e4ufiger Bericht \u00fcber das Vorkommen von Spirochaeten in syphilitischen Krankheitsprodukten und bei Papillomen","author":"FR Schaudinn","year":"1905","unstructured":"Schaudinn FR, Hoffmann E (1905) Vorl\u00e4ufiger Bericht \u00fcber das Vorkommen von Spirochaeten in syphilitischen Krankheitsprodukten und bei Papillomen. Springer"},{"key":"288_CR6","doi-asserted-by":"publisher","unstructured":"Edmondson Diane G, Hu B, Norris Steven J (2018) Long-term in vitro culture of the syphilis spirochete Treponema pallidum subsp. pallidum. mBio 9(3). https:\/\/doi.org\/10.1128\/mbio.01153-18","DOI":"10.1128\/mbio.01153-18"},{"issue":"2","key":"288_CR7","doi-asserted-by":"publisher","DOI":"10.1002\/cpz1.44","volume":"1","author":"DG Edmondson","year":"2021","unstructured":"Edmondson DG, Norris SJ (2021) In vitro cultivation of the syphilis spirochete Treponema pallidum. Curr Protoc 1(2):e44","journal-title":"Curr Protoc"},{"key":"288_CR8","doi-asserted-by":"publisher","DOI":"10.7717\/peerj.18013","volume":"12","author":"K Yadav","year":"2024","unstructured":"Yadav K, Nikalje GC (2024) Comprehensive analysis of bioplastics: life cycle assessment, waste management, biodiversity impact, and sustainable mitigation strategies. PeerJ 12:e18013","journal-title":"PeerJ"},{"issue":"5","key":"288_CR9","doi-asserted-by":"publisher","first-page":"763","DOI":"10.4155\/bfs.10.44","volume":"1","author":"M Hannon","year":"2010","unstructured":"Hannon M et al (2010) Biofuels from algae: challenges and potential. Biofuels 1(5):763\u2013784","journal-title":"Biofuels"},{"key":"288_CR10","doi-asserted-by":"publisher","DOI":"10.1016\/j.tifs.2024.104778","volume":"154","author":"S Minden","year":"2024","unstructured":"Minden S et al (2024) Producing food from CO2 using microorganisms: lots to do, little to lose! Trends Food Sci Technol 154:104778","journal-title":"Trends Food Sci Technol"},{"key":"288_CR11","doi-asserted-by":"publisher","DOI":"10.1007\/10_2024_270","volume-title":"Advances in biochemical engineering\/biotechnology","author":"L M\u00fchling","year":"2024","unstructured":"M\u00fchling L, Baur T, Molitor B (2024) Methanothermobacter thermautotrophicus and alternative methanogens: archaea-based production. In: Advances in biochemical engineering\/biotechnology. Springer, Berlin. https:\/\/doi.org\/10.1007\/10_2024_270"},{"key":"288_CR12","doi-asserted-by":"publisher","DOI":"10.1007\/10_2024_269","volume-title":"Advances in biochemical engineering\/biotechnology","author":"D Casey","year":"2024","unstructured":"Casey D et al (2024) From Knallgas bacterium to promising biomanufacturing host: the evolution of Cupriavidus necator. In: Advances in biochemical engineering\/biotechnology. Springer, Berlin. https:\/\/doi.org\/10.1007\/10_2024_269"},{"key":"288_CR13","first-page":"1","volume-title":"Advances in biochemical engineering\/biotechnology","author":"M H\u00e4drich","year":"2024","unstructured":"H\u00e4drich M et al (2024) Vibrio natriegens: application of a fast-growing halophilic bacterium. In: Advances in biochemical engineering\/biotechnology. Springer, Berlin, pp 1\u201332"},{"key":"288_CR14","doi-asserted-by":"publisher","DOI":"10.1007\/10_2024_272","volume-title":"Advances in biochemical engineering\/biotechnology","author":"L Kneuer","year":"2024","unstructured":"Kneuer L, Wurst R, Gescher J (2024) Shewanella oneidensis: biotechnological application of metal-reducing bacteria. In: Advances in biochemical engineering\/biotechnology. Springer, Berlin. https:\/\/doi.org\/10.1007\/10_2024_272"},{"key":"288_CR15","first-page":"1","volume-title":"Advances in biochemical engineering\/biotechnology","author":"P Bolay","year":"2025","unstructured":"Bolay P, Toepel J, B\u00fchler B (2025) Biotechnological applications of cyanobacteria: Synechocystis and Synechococcus strains. In: Advances in biochemical engineering\/biotechnology. Springer, Berlin, pp 1\u201337"},{"key":"288_CR16","first-page":"1","volume-title":"Advances in biochemical engineering\/biotechnology","author":"J Stiefelmaier","year":"2025","unstructured":"Stiefelmaier J (2025) Cable bacteria and their biotechnological application. In: Advances in biochemical engineering\/biotechnology. Springer, Berlin, pp 1\u201321"},{"key":"288_CR17","first-page":"1","volume-title":"Advances in biochemical engineering\/biotechnology","author":"JE Kufs","year":"2025","unstructured":"Kufs JE, Reimer C, Regestein L (2025) The amoeba Dictyostelium discoideum as novel production host for complex substances. In: Advances in biochemical engineering\/biotechnology. Springer, Berlin, pp 1\u201314"},{"issue":"4","key":"288_CR18","first-page":"355","volume":"27","author":"WE Balch","year":"1977","unstructured":"Balch WE et al (1977) Acetobacterium, a new genus of hydrogen-oxidizing, carbon dioxide-reducing, anaerobic bacteria. Int J Syst Evol Microbiol 27(4):355\u2013361","journal-title":"Int J Syst Evol Microbiol"},{"issue":"3","key":"288_CR19","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0033439","volume":"7","author":"A Poehlein","year":"2012","unstructured":"Poehlein A et al (2012) An ancient pathway combining carbon dioxide fixation with the generation and utilization of a sodium ion gradient for ATP synthesis. PLoS One 7(3):e33439","journal-title":"PLoS One"},{"issue":"4","key":"288_CR20","doi-asserted-by":"publisher","first-page":"613","DOI":"10.1007\/s00018-010-0555-8","volume":"68","author":"E Biegel","year":"2011","unstructured":"Biegel E et al (2011) Biochemistry, evolution and physiological function of the Rnf complex, a novel ion-motive electron transport complex in prokaryotes. Cell Mol Life Sci 68(4):613\u2013634","journal-title":"Cell Mol Life Sci"},{"issue":"42","key":"288_CR21","doi-asserted-by":"publisher","first-page":"18138","DOI":"10.1073\/pnas.1010318107","volume":"107","author":"E Biegel","year":"2010","unstructured":"Biegel E, M\u00fcller V (2010) Bacterial Na+-translocating ferredoxin:NAD+ oxidoreductase. Proc Natl Acad Sci 107(42):18138\u201318142","journal-title":"Proc Natl Acad Sci"},{"issue":"1\u20133","key":"288_CR22","doi-asserted-by":"publisher","first-page":"119","DOI":"10.1016\/0014-5793(91)81400-3","volume":"295","author":"R Heise","year":"1991","unstructured":"Heise R et al (1991) A sodium-stimulated ATP synthase in the acetogenic bacterium Acetobacterium woodii. FEBS Lett 295(1\u20133):119\u2013122","journal-title":"FEBS Lett"},{"issue":"12","key":"288_CR23","doi-asserted-by":"publisher","first-page":"809","DOI":"10.1038\/nrmicro3365","volume":"12","author":"K Schuchmann","year":"2014","unstructured":"Schuchmann K, M\u00fcller V (2014) Autotrophy at the thermodynamic limit of life: a model for energy conservation in acetogenic bacteria. Nat Rev Microbiol 12(12):809\u2013821","journal-title":"Nat Rev Microbiol"},{"issue":"22","key":"288_CR24","doi-asserted-by":"publisher","first-page":"8145","DOI":"10.1128\/JB.01017-07","volume":"189","author":"F Imkamp","year":"2007","unstructured":"Imkamp F et al (2007) Dissection of the caffeate respiratory chain in the acetogen Acetobacterium woodii: identification of an Rnf-type NADH dehydrogenase as a potential coupling site. J Bacteriol 189(22):8145\u20138153","journal-title":"J Bacteriol"},{"issue":"1","key":"288_CR25","doi-asserted-by":"publisher","first-page":"275","DOI":"10.1111\/j.1432-1033.1994.tb18992.x","volume":"223","author":"J Reidlinger","year":"1994","unstructured":"Reidlinger J, M\u00fcller V (1994) Purification of ATP synthase from Acetobacterium woodii and identification as a Na+-translocating F1FO-type enzyme. Eur J Biochem 223(1):275\u2013283","journal-title":"Eur J Biochem"},{"issue":"24","key":"288_CR26","doi-asserted-by":"publisher","first-page":"8008","DOI":"10.1128\/jb.175.24.8008-8013.1993","volume":"175","author":"C Seifritz","year":"1993","unstructured":"Seifritz C et al (1993) Nitrate as a preferred electron sink for the acetogen Clostridium thermoaceticum. J Bacteriol 175(24):8008\u20138013","journal-title":"J Bacteriol"},{"issue":"15","key":"288_CR27","doi-asserted-by":"publisher","first-page":"4597","DOI":"10.1128\/jb.178.15.4597-4603.1996","volume":"178","author":"JM Fr\u00f6stl","year":"1996","unstructured":"Fr\u00f6stl JM, Seifritz C, Drake HL (1996) Effect of nitrate on the autotrophic metabolism of the acetogens Clostridium thermoautotrophicum and Clostridium thermoaceticum. J Bacteriol 178(15):4597\u20134603","journal-title":"J Bacteriol"},{"issue":"3","key":"288_CR28","doi-asserted-by":"publisher","first-page":"255","DOI":"10.1007\/BF00459530","volume":"130","author":"R Bache","year":"1981","unstructured":"Bache R, Pfennig N (1981) Selective isolation of Acetobacterium woodii on methoxylated aromatic acids and determination of growth yields. Arch Microbiol 130(3):255\u2013261","journal-title":"Arch Microbiol"},{"issue":"4","key":"288_CR29","doi-asserted-by":"publisher","first-page":"273","DOI":"10.1007\/BF00292076","volume":"160","author":"C Matthies","year":"1993","unstructured":"Matthies C, Freiberger A, Drake HL (1993) Fumarate dissimilation and differential reductant flow by Clostridium formicoaceticum and Clostridium aceticum. Arch Microbiol 160(4):273\u2013278","journal-title":"Arch Microbiol"},{"issue":"2","key":"288_CR30","first-page":"232","volume":"43","author":"RS Tanner","year":"1993","unstructured":"Tanner RS, Miller LM, Yang D (1993) Clostridium ljungdahlii sp. nov., an acetogenic species in clostridial rRNA homology group I. Int J Syst Evol Microbiol 43(2):232\u2013236","journal-title":"Int J Syst Evol Microbiol"},{"issue":"5","key":"288_CR31","doi-asserted-by":"publisher","first-page":"2085","DOI":"10.1099\/ijs.0.63482-0","volume":"55","author":"JS-C Liou","year":"2005","unstructured":"Liou JS-C et al (2005) Clostridium carboxidivorans sp. nov., a solvent-producing clostridium isolated from an agricultural settling lagoon, and reclassification of the acetogen Clostridium scatologenes strain SL1 as Clostridium drakei sp. nov. Int J Syst Evol Microbiol 55(5):2085\u20132091","journal-title":"Int J Syst Evol Microbiol"},{"issue":"2","key":"288_CR32","doi-asserted-by":"publisher","first-page":"470","DOI":"10.1002\/bit.22935","volume":"108","author":"M Demler","year":"2011","unstructured":"Demler M, Weuster-Botz D (2011) Reaction engineering analysis of hydrogenotrophic production of acetic acid by Acetobacterium woodii. Biotechnol Bioeng 108(2):470\u2013474","journal-title":"Biotechnol Bioeng"},{"key":"288_CR33","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1016\/j.jbiotec.2015.07.020","volume":"212","author":"C Kantzow","year":"2015","unstructured":"Kantzow C, Mayer A, Weuster-Botz D (2015) Continuous gas fermentation by Acetobacterium woodii in a submerged membrane reactor with full cell retention. J Biotechnol 212:11\u201318","journal-title":"J Biotechnol"},{"key":"288_CR34","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1016\/j.jbiotec.2014.03.005","volume":"178","author":"M Straub","year":"2014","unstructured":"Straub M et al (2014) Selective enhancement of autotrophic acetate production with genetically modified Acetobacterium woodii. J Biotechnol 178:67\u201372","journal-title":"J Biotechnol"},{"issue":"5","key":"288_CR35","doi-asserted-by":"publisher","first-page":"2100515","DOI":"10.1002\/biot.202100515","volume":"17","author":"K Arslan","year":"2022","unstructured":"Arslan K et al (2022) Engineering Acetobacterium woodii for the production of isopropanol and acetone from carbon dioxide and hydrogen. Biotechnol J 17(5):2100515","journal-title":"Biotechnol J"},{"key":"288_CR36","doi-asserted-by":"publisher","first-page":"68","DOI":"10.1016\/j.ymben.2021.09.004","volume":"68","author":"CS Neuendorf","year":"2021","unstructured":"Neuendorf CS et al (2021) A quantitative metabolic analysis reveals Acetobacterium woodii as a flexible and robust host for formate-based bioproduction. Metab Eng 68:68\u201385","journal-title":"Metab Eng"},{"issue":"4","key":"288_CR37","doi-asserted-by":"publisher","first-page":"275","DOI":"10.1007\/BF00414697","volume":"129","author":"JA Leigh","year":"1981","unstructured":"Leigh JA, Mayer F, Wolfe RS (1981) Acetogenium kivui, a new thermophilic hydrogen-oxidizing acetogenic bacterium. Arch Microbiol 129(4):275\u2013280","journal-title":"Arch Microbiol"},{"issue":"8","key":"288_CR38","doi-asserted-by":"publisher","first-page":"2312","DOI":"10.1128\/AEM.00122-16","volume":"82","author":"C Weghoff Marie","year":"2016","unstructured":"Weghoff Marie C, M\u00fcller V (2016) CO metabolism in the thermophilic acetogen Thermoanaerobacter kivui. Appl Environ Microbiol 82(8):2312\u20132319","journal-title":"Appl Environ Microbiol"},{"issue":"1","key":"288_CR39","doi-asserted-by":"publisher","first-page":"1139","DOI":"10.1186\/1471-2164-15-1139","volume":"15","author":"V Hess","year":"2014","unstructured":"Hess V et al (2014) A genome-guided analysis of energy conservation in the thermophilic, cytochrome-free acetogenic bacterium Thermoanaerobacter kivui. BMC Genomics 15(1):1139","journal-title":"BMC Genomics"},{"issue":"1","key":"288_CR40","doi-asserted-by":"publisher","first-page":"237","DOI":"10.1186\/s13068-018-1236-3","volume":"11","author":"FM Schwarz","year":"2018","unstructured":"Schwarz FM, Schuchmann K, M\u00fcller V (2018) Hydrogenation of CO2 at ambient pressure catalyzed by a highly active thermostable biocatalyst. Biotechnol Biofuels 11(1):237","journal-title":"Biotechnol Biofuels"},{"issue":"1","key":"288_CR41","doi-asserted-by":"publisher","first-page":"32","DOI":"10.1186\/s13068-020-1670-x","volume":"13","author":"FM Schwarz","year":"2020","unstructured":"Schwarz FM, M\u00fcller V (2020) Whole-cell biocatalysis for hydrogen storage and syngas conversion to formate using a thermophilic acetogen. Biotechnol Biofuels 13(1):32","journal-title":"Biotechnol Biofuels"},{"key":"288_CR42","doi-asserted-by":"publisher","DOI":"10.1016\/j.biteb.2023.101740","volume":"25","author":"JS Deutzmann","year":"2024","unstructured":"Deutzmann JS, Spormann AM (2024) High acetate titer obtained from CO2 by thermophilic microbial electrosynthesis with Thermoanaerobacter kivui. Bioresour Technol Rep 25:101740","journal-title":"Bioresour Technol Rep"},{"issue":"3","key":"288_CR43","doi-asserted-by":"publisher","first-page":"e02210","DOI":"10.1128\/AEM.02210-17","volume":"84","author":"M Basen","year":"2018","unstructured":"Basen M et al (2018) A genetic system for the thermophilic acetogenic bacterium Thermoanaerobacter kivui. Appl Environ Microbiol 84(3):e02210\u2013e02217","journal-title":"Appl Environ Microbiol"},{"key":"288_CR44","volume-title":"The biochemistry of methylotrophs","author":"C Anthony","year":"1982","unstructured":"Anthony C (1982) The biochemistry of methylotrophs. Academic Press, London"},{"issue":"2","key":"288_CR45","doi-asserted-by":"publisher","first-page":"107","DOI":"10.1016\/j.tibtech.2008.10.009","volume":"27","author":"J Schrader","year":"2009","unstructured":"Schrader J et al (2009) Methanol-based industrial biotechnology: current status and future perspectives of methylotrophic bacteria. Trends Biotechnol 27(2):107\u2013115","journal-title":"Trends Biotechnol"},{"issue":"3","key":"288_CR46","doi-asserted-by":"publisher","first-page":"1038","DOI":"10.1128\/JB.183.3.1038-1046.2001","volume":"183","author":"N Korotkova","year":"2001","unstructured":"Korotkova N, Lidstrom Mary E (2001) Connection between poly-\u03b2-hydroxybutyrate biosynthesis and growth on C1 and C2 compounds in the methylotroph Methylobacterium extorquens AM1. J Bacteriol 183(3):1038\u20131046","journal-title":"J Bacteriol"},{"key":"288_CR47","doi-asserted-by":"publisher","first-page":"1027","DOI":"10.3389\/fmicb.2019.01027","volume":"10","author":"CK Lim","year":"2019","unstructured":"Lim CK et al (2019) Designing and engineering Methylorubrum extorquens AM1 for itaconic acid production. Front Microbiol 10:1027","journal-title":"Front Microbiol"},{"issue":"5","key":"288_CR48","doi-asserted-by":"publisher","first-page":"370","DOI":"10.1007\/BF00294592","volume":"24","author":"T Suzuki","year":"1986","unstructured":"Suzuki T, Yamane T, Shimizu S (1986) Mass production of poly-\u03b2-hydroxybutyric acid by fed-batch culture with controlled carbon\/nitrogen feeding. Appl Microbiol Biotechnol 24(5):370\u2013374","journal-title":"Appl Microbiol Biotechnol"},{"issue":"1","key":"288_CR49","doi-asserted-by":"publisher","first-page":"7","DOI":"10.1007\/BF00174194","volume":"37","author":"D Bourque","year":"1992","unstructured":"Bourque D et al (1992) Production of poly-\u03b2-hydroxybutyrate from methanol: characterization of a new isolate of Methylobacterium extorquens. Appl Microbiol Biotechnol 37(1):7\u201312","journal-title":"Appl Microbiol Biotechnol"},{"issue":"5","key":"288_CR50","doi-asserted-by":"publisher","DOI":"10.1371\/journal.pone.0005584","volume":"4","author":"S Vuilleumier","year":"2009","unstructured":"Vuilleumier S et al (2009) Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. PLoS One 4(5):e5584","journal-title":"PLoS One"},{"issue":"22","key":"288_CR51","doi-asserted-by":"publisher","first-page":"6174","DOI":"10.1128\/JB.184.22.6174-6181.2002","volume":"184","author":"N Korotkova","year":"2002","unstructured":"Korotkova N, Chistoserdova L, Lidstrom Mary E (2002) Poly-\u03b2-hydroxybutyrate biosynthesis in the facultative methylotroph Methylobacterium extorquens AM1: identification and mutation of gap11, gap20, and phaR. J Bacteriol 184(22):6174\u20136181","journal-title":"J Bacteriol"},{"key":"288_CR52","doi-asserted-by":"publisher","first-page":"284","DOI":"10.1016\/j.ijbiomac.2021.02.092","volume":"177","author":"J Yoon","year":"2021","unstructured":"Yoon J et al (2021) Metabolic engineering of Methylorubrum extorquens AM1 for poly (3-hydroxybutyrate-co-3-hydroxyvalerate) production using formate. Int J Biol Macromol 177:284\u2013293","journal-title":"Int J Biol Macromol"},{"issue":"6","key":"288_CR53","doi-asserted-by":"publisher","first-page":"2218","DOI":"10.1111\/are.13678","volume":"49","author":"RW Hardy","year":"2018","unstructured":"Hardy RW et al (2018) Partial replacement of soybean meal with Methylobacterium extorquens single-cell protein in feeds for rainbow trout (Oncorhynchus mykiss Walbaum). Aquac Res 49(6):2218\u20132224","journal-title":"Aquac Res"},{"issue":"8","key":"288_CR54","doi-asserted-by":"publisher","first-page":"3407","DOI":"10.1007\/s00253-015-6418-3","volume":"99","author":"F Sonntag","year":"2015","unstructured":"Sonntag F et al (2015) High-level production of ethylmalonyl-CoA pathway-derived dicarboxylic acids by Methylobacterium extorquens under cobalt-deficient conditions and by polyhydroxybutyrate negative strains. Appl Microbiol Biotechnol 99(8):3407\u20133419","journal-title":"Appl Microbiol Biotechnol"},{"key":"288_CR55","doi-asserted-by":"publisher","first-page":"82","DOI":"10.1016\/j.ymben.2015.09.004","volume":"32","author":"F Sonntag","year":"2015","unstructured":"Sonntag F et al (2015) Engineering Methylobacterium extorquens for de novo synthesis of the sesquiterpenoid \u03b1-humulene from methanol. Metab Eng 32:82\u201394","journal-title":"Metab Eng"},{"issue":"Pt B","key":"288_CR56","doi-asserted-by":"publisher","first-page":"383","DOI":"10.1016\/j.jbiotec.2013.12.016","volume":"192","author":"J Beekwilder","year":"2014","unstructured":"Beekwilder J et al (2014) Polycistronic expression of a \u03b2-carotene biosynthetic pathway in Saccharomyces cerevisiae coupled to \u03b2-ionone production. J Biotechnol 192(Pt B):383\u2013392","journal-title":"J Biotechnol"},{"issue":"3","key":"288_CR57","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1007\/s10482-022-01795-9","volume":"116","author":"D Dudko","year":"2023","unstructured":"Dudko D, Holtmann D, Buchhaupt M (2023) Methylotrophic bacteria with cobalamin-dependent mutases in primary metabolism as potential strains for vitamin B12 production. Antonie Van Leeuwenhoek 116(3):207\u2013220","journal-title":"Antonie Van Leeuwenhoek"},{"issue":"19","key":"288_CR58","doi-asserted-by":"publisher","first-page":"5295","DOI":"10.1002\/cssc.202001272","volume":"13","author":"R Hegner","year":"2020","unstructured":"Hegner R et al (2020) Coupled electrochemical and microbial catalysis for the production of polymer bricks. ChemSusChem 13(19):5295\u20135300","journal-title":"ChemSusChem"},{"issue":"5","key":"288_CR59","doi-asserted-by":"publisher","first-page":"1062","DOI":"10.2144\/02335rr01","volume":"33","author":"CJ Marx","year":"2002","unstructured":"Marx CJ, Lidstrom ME (2002) Broad-host-range cre-lox system for antibiotic marker recycling in gram-negative bacteria. Biotechniques 33(5):1062\u20131067","journal-title":"Biotechniques"},{"issue":"1","key":"288_CR60","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1186\/s12934-023-02275-z","volume":"23","author":"L Zhu","year":"2024","unstructured":"Zhu L et al (2024) Heterologous production of 3-hydroxypropionic acid in Methylorubrum extorquens by introducing the mcr gene via a multi-round chromosomal integration system based on cre-lox71\/lox66 and transposon. Microb Cell Factories 23(1):5","journal-title":"Microb Cell Factories"},{"issue":"1","key":"288_CR61","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1186\/1756-0500-1-1","volume":"1","author":"CJ Marx","year":"2008","unstructured":"Marx CJ (2008) Development of a broad-host-range sacB-based vector for unmarked allelic exchange. BMC Res Notes 1(1):1","journal-title":"BMC Res Notes"},{"issue":"1","key":"288_CR62","doi-asserted-by":"publisher","first-page":"183","DOI":"10.1186\/1756-0500-6-183","volume":"6","author":"LM Chubiz","year":"2013","unstructured":"Chubiz LM et al (2013) A novel pair of inducible expression vectors for use in Methylobacterium extorquens. BMC Res Notes 6(1):183","journal-title":"BMC Res Notes"},{"issue":"4","key":"288_CR63","doi-asserted-by":"publisher","first-page":"430","DOI":"10.1021\/sb500221v","volume":"4","author":"L Schada von Borzyskowski","year":"2015","unstructured":"Schada von Borzyskowski L et al (2015) A set of versatile brick vectors and promoters for the assembly, expression, and integration of synthetic operons in Methylobacterium extorquens AM1 and other alphaproteobacteria. ACS Synth Biol 4(4):430\u2013443","journal-title":"ACS Synth Biol"},{"issue":"4","key":"288_CR64","doi-asserted-by":"publisher","first-page":"487","DOI":"10.1016\/S0723-2020(83)80006-X","volume":"4","author":"Y Suzuki","year":"1983","unstructured":"Suzuki Y et al (1983) Bacillus thermoglucosidasius sp. nov., a new species of obligately thermophilic bacilli. Syst Appl Microbiol 4(4):487\u2013495","journal-title":"Syst Appl Microbiol"},{"issue":"8","key":"288_CR65","doi-asserted-by":"publisher","first-page":"527","DOI":"10.1016\/j.syapm.2016.09.004","volume":"39","author":"H Aliyu","year":"2016","unstructured":"Aliyu H et al (2016) Phylogenomic re-assessment of the thermophilic genus Geobacillus. Syst Appl Microbiol 39(8):527\u2013533","journal-title":"Syst Appl Microbiol"},{"issue":"Pt 2","key":"288_CR66","doi-asserted-by":"publisher","first-page":"433","DOI":"10.1099\/00207713-51-2-433","volume":"51","author":"TN Nazina","year":"2001","unstructured":"Nazina TN et al (2001) Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. th. Int J Syst Evol Microbiol 51(Pt 2):433\u2013446","journal-title":"Int J Syst Evol Microbiol"},{"issue":"5","key":"288_CR67","doi-asserted-by":"publisher","first-page":"841","DOI":"10.1007\/s00253-008-1372-y","volume":"78","author":"R Marchant","year":"2008","unstructured":"Marchant R et al (2008) Thermophilic bacteria in cool temperate soils: are they metabolically active or continually added by global atmospheric transport? Appl Microbiol Biotechnol 78(5):841\u2013852","journal-title":"Appl Microbiol Biotechnol"},{"issue":"Pt 1","key":"288_CR68","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1099\/mic.0.071696-0","volume":"160","author":"DR Zeigler","year":"2014","unstructured":"Zeigler DR (2014) The Geobacillus paradox: why is a thermophilic bacterial genus so prevalent on a mesophilic planet? Microbiology (Reading) 160(Pt 1):1\u201311","journal-title":"Microbiology (Reading)"},{"issue":"1","key":"288_CR69","doi-asserted-by":"publisher","first-page":"880","DOI":"10.1186\/s12864-018-5302-9","volume":"19","author":"T Mohr","year":"2018","unstructured":"Mohr T et al (2018) Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities. BMC Genomics 19(1):880","journal-title":"BMC Genomics"},{"issue":"4","key":"288_CR70","doi-asserted-by":"publisher","DOI":"10.1264\/jsme2.ME20101","volume":"35","author":"Y Adachi","year":"2020","unstructured":"Adachi Y et al (2020) Genetic engineering of carbon monoxide-dependent hydrogen-producing machinery in Parageobacillus thermoglucosidasius. Microbes Environ 35(4):ME20101","journal-title":"Microbes Environ"},{"issue":"1","key":"288_CR71","doi-asserted-by":"publisher","first-page":"279","DOI":"10.1016\/j.ijhydene.2007.07.026","volume":"33","author":"S Manish","year":"2008","unstructured":"Manish S, Banerjee R (2008) Comparison of biohydrogen production processes. Int J Hydrog Energy 33(1):279\u2013286","journal-title":"Int J Hydrog Energy"},{"issue":"1","key":"288_CR72","doi-asserted-by":"publisher","first-page":"836","DOI":"10.1186\/1471-2164-15-836","volume":"15","author":"P De Maayer","year":"2014","unstructured":"De Maayer P et al (2014) Comparative analysis of the Geobacillus hemicellulose utilization locus reveals a highly variable target for improved hemicellulolysis. BMC Genomics 15(1):836","journal-title":"BMC Genomics"},{"issue":"1","key":"288_CR73","doi-asserted-by":"publisher","first-page":"251","DOI":"10.1186\/s12934-022-01971-6","volume":"21","author":"CC Ibenegbu","year":"2022","unstructured":"Ibenegbu CC, Leak DJ (2022) Simultaneous saccharification and ethanologenic fermentation (SSF) of waste bread by an amylolytic Parageobacillus thermoglucosidasius strain TM333. Microb Cell Factories 21(1):251","journal-title":"Microb Cell Factories"},{"key":"288_CR74","doi-asserted-by":"publisher","DOI":"10.3389\/fmicb.2022.985465","volume":"13","author":"J Liang","year":"2022","unstructured":"Liang J et al (2022) Removing carbon catabolite repression in Parageobacillus thermoglucosidasius DSM 2542. Front Microbiol 13:985465","journal-title":"Front Microbiol"},{"issue":"1","key":"288_CR75","doi-asserted-by":"publisher","first-page":"7131","DOI":"10.1038\/s41598-023-33918-1","volume":"13","author":"GN Bidart","year":"2023","unstructured":"Bidart GN, Gharabli H, Welner DH (2023) Functional characterization of the phosphotransferase system in Parageobacillus thermoglucosidasius. Sci Rep 13(1):7131","journal-title":"Sci Rep"},{"issue":"11","key":"288_CR76","doi-asserted-by":"publisher","first-page":"592","DOI":"10.3390\/fermentation10110592","volume":"10","author":"MS Ardila","year":"2024","unstructured":"Ardila MS et al (2024) Effect of different partial pressures on H2 production with Parageobacillus thermoglucosidasius DSM 6285. Fermentation 10(11):592","journal-title":"Fermentation"},{"issue":"5","key":"288_CR77","doi-asserted-by":"publisher","first-page":"1090","DOI":"10.3390\/microorganisms9051090","volume":"9","author":"H Aliyu","year":"2021","unstructured":"Aliyu H et al (2021) Carbon monoxide induced metabolic shift in the carboxydotrophic Parageobacillus thermoglucosidasius DSM 6285. Microorganisms 9(5):1090","journal-title":"Microorganisms"},{"key":"288_CR78","doi-asserted-by":"publisher","first-page":"123","DOI":"10.1016\/j.ymben.2021.03.002","volume":"65","author":"V Mol","year":"2021","unstructured":"Mol V et al (2021) Genome-scale metabolic modeling of P. thermoglucosidasius NCIMB 11955 reveals metabolic bottlenecks in anaerobic metabolism. Metab Eng 65:123\u2013134","journal-title":"Metab Eng"},{"key":"288_CR79","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1016\/j.ymben.2024.03.001","volume":"83","author":"M Paredes-Barrada","year":"2024","unstructured":"Paredes-Barrada M et al (2024) Parageobacillus thermoglucosidasius as an emerging thermophilic cell factory. Metab Eng 83:39\u201351","journal-title":"Metab Eng"},{"issue":"1","key":"288_CR80","doi-asserted-by":"publisher","first-page":"73","DOI":"10.1186\/s40793-015-0031-z","volume":"10","author":"PJ Brumm","year":"2015","unstructured":"Brumm PJ, Land ML, Mead DA (2015) Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park. Stand Genomic Sci 10(1):73","journal-title":"Stand Genomic Sci"},{"issue":"5","key":"288_CR81","doi-asserted-by":"publisher","DOI":"10.1128\/MRA.01666-18","volume":"8","author":"M Inoue","year":"2019","unstructured":"Inoue M et al (2019) Draft genome sequence of Parageobacillus thermoglucosidasius strain TG4, a hydrogenogenic carboxydotrophic bacterium isolated from a marine sediment. Microbiol Resour Announc 8(5):e01666-18","journal-title":"Microbiol Resour Announc"},{"issue":"7","key":"288_CR82","doi-asserted-by":"publisher","first-page":"1739","DOI":"10.1021\/acssynbio.1c00138","volume":"10","author":"MSH Lau","year":"2021","unstructured":"Lau MSH et al (2021) Development of a suite of tools for genome editing in Parageobacillus thermoglucosidasius and their use to identify the potential of a native plasmid in the generation of stable engineered strains. ACS Synth Biol 10(7):1739\u20131749","journal-title":"ACS Synth Biol"},{"issue":"5","key":"288_CR83","doi-asserted-by":"publisher","DOI":"10.1128\/genomeA.01065-16","volume":"4","author":"L Sheng","year":"2016","unstructured":"Sheng L, Zhang Y, Minton NP (2016) Complete genome sequence of Geobacillus thermoglucosidasius NCIMB 11955, the progenitor of a bioethanol production strain. Genome Announc 4(5):e01065-16","journal-title":"Genome Announc"},{"key":"288_CR84","doi-asserted-by":"publisher","first-page":"45","DOI":"10.1016\/j.biombioe.2016.08.015","volume":"95","author":"M Raita","year":"2016","unstructured":"Raita M et al (2016) Production of ethanol by thermophilic oligosaccharide utilising Geobacillus thermoglucosidasius TM242 using palm kernel cake as a renewable feedstock. Biomass Bioenergy 95:45\u201354","journal-title":"Biomass Bioenergy"},{"key":"288_CR85","doi-asserted-by":"publisher","DOI":"10.1016\/j.chemosphere.2022.135242","volume":"304","author":"S Madhuvanthi","year":"2022","unstructured":"Madhuvanthi S et al (2022) Optimization of consolidated bioprocessing by response surface methodology in the conversion of corn stover to bioethanol by thermophilic Geobacillus thermoglucosidasius. Chemosphere 304:135242","journal-title":"Chemosphere"},{"issue":"3\u20134","key":"288_CR86","doi-asserted-by":"publisher","first-page":"326","DOI":"10.1002\/jobm.202200394","volume":"63","author":"A Basak","year":"2023","unstructured":"Basak A et al (2023) Optimization and biochemical characterization of a thermotolerant processive cellulase, PtCel1, of Parageobacillus thermoglucosidasius NBCB1. J Basic Microbiol 63(3\u20134):326\u2013339","journal-title":"J Basic Microbiol"},{"issue":"1","key":"288_CR87","doi-asserted-by":"publisher","first-page":"9","DOI":"10.1186\/1475-2859-6-9","volume":"6","author":"P Turner","year":"2007","unstructured":"Turner P, Mamo G, Karlsson EN (2007) Potential and utilization of thermophiles and thermostable enzymes in biorefining. Microb Cell Factories 6(1):9","journal-title":"Microb Cell Factories"},{"key":"288_CR88","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1016\/bs.aambs.2015.03.001","volume":"92","author":"AH Hussein","year":"2015","unstructured":"Hussein AH, Lisowska BK, Leak DJ (2015) The genus Geobacillus and their biotechnological potential. Adv Appl Microbiol 92:1\u201348","journal-title":"Adv Appl Microbiol"},{"issue":"1","key":"288_CR89","doi-asserted-by":"publisher","first-page":"24","DOI":"10.1186\/s43141-021-00123-4","volume":"19","author":"AM Saeed","year":"2021","unstructured":"Saeed AM, El-Shatoury EH, Sayed HAE (2021) Statistical factorial designs for optimum production of thermostable \u03b1-amylase by the degradative bacterium Parageobacillus thermoglucosidasius Pharon1 isolated from Sinai, Egypt. J Genet Eng Biotechnol 19(1):24","journal-title":"J Genet Eng Biotechnol"},{"issue":"11","key":"288_CR90","doi-asserted-by":"publisher","first-page":"2609","DOI":"10.3390\/molecules25112609","volume":"25","author":"AD Suleiman","year":"2020","unstructured":"Suleiman AD et al (2020) Effect of cultural conditions on protease production by a thermophilic Geobacillus thermoglucosidasius SKF4 isolated from Sungai Klah Hot Spring Park, Malaysia. Molecules 25(11):2609","journal-title":"Molecules"},{"issue":"6","key":"288_CR91","doi-asserted-by":"publisher","first-page":"398","DOI":"10.1016\/j.ymben.2009.08.005","volume":"11","author":"RE Cripps","year":"2009","unstructured":"Cripps RE et al (2009) Metabolic engineering of Geobacillus thermoglucosidasius for high yield ethanol production. Metab Eng 11(6):398\u2013408","journal-title":"Metab Eng"},{"issue":"1","key":"288_CR92","doi-asserted-by":"publisher","first-page":"165","DOI":"10.1186\/s12934-024-02433-x","volume":"23","author":"J Calverley","year":"2024","unstructured":"Calverley J et al (2024) Ethanologenic fermentation by Parageobacillus thermoglucosidasius with continuous hot microbubble gas-stripping. Microb Cell Factories 23(1):165","journal-title":"Microb Cell Factories"},{"issue":"10","key":"288_CR93","doi-asserted-by":"publisher","first-page":"4303","DOI":"10.1007\/s00253-020-10553-8","volume":"104","author":"J Zhou","year":"2020","unstructured":"Zhou J, Lian J, Rao CV (2020) Metabolic engineering of Parageobacillus thermoglucosidasius for the efficient production of (2R, 3R)-butanediol. Appl Microbiol Biotechnol 104(10):4303\u20134311","journal-title":"Appl Microbiol Biotechnol"},{"key":"288_CR94","doi-asserted-by":"publisher","first-page":"1191079","DOI":"10.3389\/fbioe.2023.1191079","volume":"11","author":"L Sheng","year":"2023","unstructured":"Sheng L et al (2023) Metabolic engineering for the production of acetoin and 2,3-butanediol at elevated temperature in Parageobacillus thermoglucosidasius NCIMB 11955. Front Bioeng Biotechnol 11:1191079","journal-title":"Front Bioeng Biotechnol"},{"key":"288_CR95","doi-asserted-by":"publisher","DOI":"10.1016\/j.biortech.2023.130164","volume":"393","author":"J Liu","year":"2024","unstructured":"Liu J et al (2024) Metabolic engineering of Geobacillus thermoglucosidasius for polymer-grade lactic acid production at high temperature. Bioresour Technol 393:130164","journal-title":"Bioresour Technol"},{"key":"288_CR96","doi-asserted-by":"publisher","DOI":"10.1016\/j.biortech.2021.125490","volume":"337","author":"M Singhvi","year":"2021","unstructured":"Singhvi M et al (2021) Nanoparticle-associated single step hydrogen fermentation for the conversion of starch potato waste biomass by thermophilic Parageobacillus thermoglucosidasius. Bioresour Technol 337:125490","journal-title":"Bioresour Technol"},{"key":"288_CR97","doi-asserted-by":"publisher","first-page":"146","DOI":"10.1016\/j.ymben.2020.11.005","volume":"65","author":"MQ Styles","year":"2021","unstructured":"Styles MQ et al (2021) The heterologous production of terpenes by the thermophile Parageobacillus thermoglucosidasius in a consolidated bioprocess using waste bread. Metab Eng 65:146\u2013155","journal-title":"Metab Eng"},{"issue":"2","key":"288_CR98","doi-asserted-by":"publisher","first-page":"363","DOI":"10.1111\/1751-7915.13543","volume":"14","author":"Z Yang","year":"2021","unstructured":"Yang Z et al (2021) Engineering thermophilic Geobacillus thermoglucosidasius for riboflavin production. Microb Biotechnol 14(2):363\u2013373","journal-title":"Microb Biotechnol"},{"key":"288_CR99","doi-asserted-by":"publisher","unstructured":"D\u00edaz DB, Neumann A, Aliyu H (2022) Thermophilic water gas shift reaction at high carbon monoxide and hydrogen partial pressures in Parageobacillus thermoglucosidasius KP1013. Fermentation 8. https:\/\/doi.org\/10.3390\/fermentation8110596","DOI":"10.3390\/fermentation8110596"},{"issue":"1","key":"288_CR100","doi-asserted-by":"publisher","first-page":"207","DOI":"10.1186\/s13568-019-0931-1","volume":"9","author":"T Mohr","year":"2019","unstructured":"Mohr T et al (2019) Effects of different operating parameters on hydrogen production by Parageobacillus thermoglucosidasius DSM 6285. AMB Express 9(1):207","journal-title":"AMB Express"},{"issue":"8","key":"288_CR101","doi-asserted-by":"publisher","first-page":"1653","DOI":"10.1039\/C8SE00085A","volume":"2","author":"M Alfano","year":"2018","unstructured":"Alfano M, Cavazza C (2018) The biologically mediated water\u2013gas shift reaction: structure, function and biosynthesis of monofunctional [NiFe]-carbon monoxide dehydrogenases. Sustain Energy Fuels 2(8):1653\u20131670","journal-title":"Sustain Energy Fuels"},{"key":"288_CR102","doi-asserted-by":"publisher","first-page":"141","DOI":"10.1007\/978-981-16-3731-5_8","volume-title":"Microbial communities and their interactions in the extreme environment","author":"A Saghatelyan","year":"2021","unstructured":"Saghatelyan A, Panosyan H, Birkeland N-K (2021) The genus Thermus: a brief history of cosmopolitan extreme thermophiles: diversity, distribution, biotechnological potential and applications. In: Egamberdieva D et al (eds) Microbial communities and their interactions in the extreme environment. Springer, Singapore, pp 141\u2013175"},{"issue":"4839","key":"288_CR103","doi-asserted-by":"publisher","first-page":"487","DOI":"10.1126\/science.2448875","volume":"239","author":"RK Saiki","year":"1988","unstructured":"Saiki RK et al (1988) Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239(4839):487\u2013491","journal-title":"Science"},{"issue":"2","key":"288_CR104","first-page":"77","volume":"9","author":"I Lasa","year":"1993","unstructured":"Lasa I, Berenguer J (1993) Thermophilic enzymes and their biotechnological potential. Microbiologia 9(2):77\u201389","journal-title":"Microbiologia"},{"issue":"1","key":"288_CR105","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/s00253-001-0843-1","volume":"58","author":"A Pantazaki","year":"2002","unstructured":"Pantazaki A, Pritsa A, Kyriakidis D (2002) Biotechnologically relevant enzymes from Thermus thermophilus. Appl Microbiol Biotechnol 58(1):1\u201312","journal-title":"Appl Microbiol Biotechnol"},{"issue":"3","key":"288_CR106","doi-asserted-by":"publisher","first-page":"179","DOI":"10.1007\/s007920050058","volume":"2","author":"JG Zeikus","year":"1998","unstructured":"Zeikus JG, Vieille C, Savchenko A (1998) Thermozymes: biotechnology and structure\u2013function relationships. Extremophiles 2(3):179\u2013183","journal-title":"Extremophiles"},{"issue":"2","key":"288_CR107","doi-asserted-by":"publisher","first-page":"213","DOI":"10.1007\/s00792-009-0226-6","volume":"13","author":"F Cava","year":"2009","unstructured":"Cava F, Hidalgo A, Berenguer J (2009) Thermus thermophilus as biological model. Extremophiles 13(2):213\u2013231","journal-title":"Extremophiles"},{"issue":"1","key":"288_CR108","doi-asserted-by":"publisher","first-page":"126","DOI":"10.1186\/s12934-020-01385-2","volume":"19","author":"Y Fujino","year":"2020","unstructured":"Fujino Y et al (2020) Development of a new gene expression vector for Thermus thermophilus using a silica-inducible promoter. Microb Cell Factories 19(1):126","journal-title":"Microb Cell Factories"},{"issue":"7","key":"288_CR109","doi-asserted-by":"publisher","first-page":"3839","DOI":"10.1128\/AEM.70.7.3839-3844.2004","volume":"70","author":"A Hidalgo","year":"2004","unstructured":"Hidalgo A et al (2004) Thermus thermophilus as a cell factory for the production of a thermophilic Mn-dependent catalase which fails to be synthesized in an active form in Escherichia coli. Appl Environ Microbiol 70(7):3839\u20133844","journal-title":"Appl Environ Microbiol"},{"issue":"1","key":"288_CR110","doi-asserted-by":"publisher","first-page":"2","DOI":"10.1016\/S0147-619X(02)00146-4","volume":"49","author":"R Moreno","year":"2003","unstructured":"Moreno R et al (2003) Development of a gene expression vector for Thermus thermophilus based on the promoter of the respiratory nitrate reductase. Plasmid 49(1):2\u20138","journal-title":"Plasmid"},{"issue":"4","key":"288_CR111","doi-asserted-by":"publisher","first-page":"189","DOI":"10.1007\/s10295-004-0130-0","volume":"31","author":"H-S Park","year":"2004","unstructured":"Park H-S et al (2004) Heterologous gene expression in Thermus thermophilus: \u03b2-galactosidase, dibenzothiophene monooxygenase, PNB carboxy esterase, 2-aminobiphenyl-2,3-diol dioxygenase, and chloramphenicol acetyl transferase. J Ind Microbiol Biotechnol 31(4):189\u2013197","journal-title":"J Ind Microbiol Biotechnol"},{"issue":"6","key":"288_CR112","doi-asserted-by":"publisher","first-page":"513","DOI":"10.2323\/jgam.17.513","volume":"17","author":"T Oshima","year":"1971","unstructured":"Oshima T, Imahori K (1971) Isolation of an extreme thermophile and thermostability of its transfer ribonucleic acid and ribosomes. J Gen Appl Microbiol 17(6):513\u2013517","journal-title":"J Gen Appl Microbiol"},{"issue":"1","key":"288_CR113","first-page":"102","volume":"24","author":"T Oshima","year":"1974","unstructured":"Oshima T, Imahori K (1974) Description of Thermus thermophilus (Yoshida and Oshima) comb. nov., a nonsporulating thermophilic bacterium from a Japanese thermal spa. Int J Syst Evol Microbiol 24(1):102\u2013112","journal-title":"Int J Syst Evol Microbiol"},{"issue":"4","key":"288_CR114","doi-asserted-by":"publisher","first-page":"654","DOI":"10.1016\/j.jbiotec.2006.03.043","volume":"124","author":"H Br\u00fcggemann","year":"2006","unstructured":"Br\u00fcggemann H, Chen C (2006) Comparative genomics of Thermus thermophilus: plasticity of the megaplasmid and its contribution to a thermophilic lifestyle. J Biotechnol 124(4):654\u2013661","journal-title":"J Biotechnol"},{"issue":"5","key":"288_CR115","doi-asserted-by":"publisher","first-page":"547","DOI":"10.1038\/nbt956","volume":"22","author":"A Henne","year":"2004","unstructured":"Henne A et al (2004) The genome sequence of the extreme thermophile Thermus thermophilus. Nat Biotechnol 22(5):547\u2013553","journal-title":"Nat Biotechnol"},{"issue":"5","key":"288_CR116","doi-asserted-by":"publisher","first-page":"524","DOI":"10.1038\/nbt0504-524","volume":"22","author":"W Liebl","year":"2004","unstructured":"Liebl W (2004) Genomics taken to the extreme. Nat Biotechnol 22(5):524\u2013525","journal-title":"Nat Biotechnol"},{"issue":"1","key":"288_CR117","doi-asserted-by":"publisher","first-page":"5","DOI":"10.1186\/1475-2859-3-5","volume":"3","author":"EE Lioliou","year":"2004","unstructured":"Lioliou EE, Pantazaki AA, Kyriakidis DA (2004) Thermus thermophilus genome analysis: benefits and implications. Microb Cell Factories 3(1):5","journal-title":"Microb Cell Factories"},{"issue":"12","key":"288_CR118","doi-asserted-by":"publisher","first-page":"3137","DOI":"10.1128\/JB.180.12.3137-3143.1998","volume":"180","author":"S Ram\u00edrez-Arcos","year":"1998","unstructured":"Ram\u00edrez-Arcos S et al (1998) Anaerobic growth, a property horizontally transferred by an Hfr-like mechanism among extreme thermophiles. J Bacteriol 180(12):3137\u20133143","journal-title":"J Bacteriol"},{"issue":"3","key":"288_CR119","doi-asserted-by":"publisher","first-page":"241","DOI":"10.1006\/plas.1999.1427","volume":"42","author":"M de Grado","year":"1999","unstructured":"de Grado M, Cast\u00e1n P, Berenguer J (1999) A high-transformation-efficiency cloning vector for Thermus thermophilus. Plasmid 42(3):241\u2013245","journal-title":"Plasmid"},{"issue":"1","key":"288_CR120","doi-asserted-by":"publisher","first-page":"338","DOI":"10.1128\/jb.166.1.338-340.1986","volume":"166","author":"Y Koyama","year":"1986","unstructured":"Koyama Y et al (1986) Genetic transformation of the extreme thermophile Thermus thermophilus and of other Thermus spp. J Bacteriol 166(1):338\u2013340","journal-title":"J Bacteriol"},{"issue":"18","key":"288_CR121","doi-asserted-by":"publisher","first-page":"4210","DOI":"10.1111\/j.1742-4658.2006.05416.x","volume":"273","author":"C Schwarzenlander","year":"2006","unstructured":"Schwarzenlander C, Averhoff B (2006) Characterization of DNA transport in the thermophilic bacterium Thermus thermophilus HB27. FEBS J 273(18):4210\u20134218","journal-title":"FEBS J"},{"issue":"1","key":"288_CR122","doi-asserted-by":"publisher","first-page":"591","DOI":"10.1128\/AEM.71.1.591-593.2005","volume":"71","author":"R Moreno","year":"2005","unstructured":"Moreno R et al (2005) High-level overproduction of His-tagged Tth DNA polymerase in Thermus thermophilus. Appl Environ Microbiol 71(1):591\u2013593","journal-title":"Appl Environ Microbiol"},{"issue":"1","key":"288_CR123","doi-asserted-by":"publisher","first-page":"187","DOI":"10.1186\/s12934-023-02192-1","volume":"22","author":"L Kirchner","year":"2023","unstructured":"Kirchner L, M\u00fcller V, Averhoff B (2023) A temperature dependent pilin promoter for production of thermostable enzymes in Thermus thermophilus. Microb Cell Factories 22(1):187","journal-title":"Microb Cell Factories"},{"issue":"5","key":"288_CR124","doi-asserted-by":"publisher","first-page":"1039","DOI":"10.1007\/s00253-007-0915-y","volume":"75","author":"K Egorova","year":"2007","unstructured":"Egorova K et al (2007) High yield of mannosylglycerate production by upshock fermentation and bacterial milking of trehalose-deficient mutant Thermus thermophilus RQ-1. Appl Microbiol Biotechnol 75(5):1039\u20131045","journal-title":"Appl Microbiol Biotechnol"},{"issue":"12","key":"288_CR125","doi-asserted-by":"publisher","first-page":"4334","DOI":"10.1111\/jocd.16531","volume":"23","author":"J Wang","year":"2024","unstructured":"Wang J et al (2024) Novel Thermus thermophilus and Bacillus subtilis mixed-culture ferment extract provides potent skin benefits in vitro and protects skin from aging. J Cosmet Dermatol 23(12):4334\u20134342","journal-title":"J Cosmet Dermatol"},{"key":"288_CR126","doi-asserted-by":"publisher","DOI":"10.1016\/j.lwt.2024.116497","volume":"205","author":"Y-F Wei","year":"2024","unstructured":"Wei Y-F et al (2024) Isolation, purification and characterization of antioxidant peptides from Spirulina platensis extracts co-fermentation with Thermus thermophilus HB27 and Saccharomyces cerevisiae CH006. LWT 205:116497","journal-title":"LWT"},{"issue":"4","key":"288_CR127","doi-asserted-by":"publisher","first-page":"412","DOI":"10.1002\/mlf2.12045","volume":"1","author":"J Wang","year":"2022","unstructured":"Wang J et al (2022) High-efficiency genome editing of an extreme thermophile Thermus thermophilus using endogenous type I and type III CRISPR-Cas systems. mLife 1(4):412\u2013427","journal-title":"mLife"},{"issue":"1","key":"288_CR128","doi-asserted-by":"publisher","first-page":"9586","DOI":"10.1038\/s41598-021-89029-2","volume":"11","author":"BT Adalsteinsson","year":"2021","unstructured":"Adalsteinsson BT et al (2021) Efficient genome editing of an extreme thermophile, Thermus thermophilus, using a thermostable Cas9 variant. Sci Rep 11(1):9586","journal-title":"Sci Rep"},{"issue":"2","key":"288_CR129","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1007\/s00203-025-04246-x","volume":"207","author":"A Karimi-Fard","year":"2025","unstructured":"Karimi-Fard A et al (2025) CRISPR-Cas-mediated adaptation of Thermus thermophilus HB8 to environmental stress conditions. Arch Microbiol 207(2):41","journal-title":"Arch Microbiol"},{"issue":"3","key":"288_CR130","doi-asserted-by":"publisher","first-page":"315","DOI":"10.1111\/j.1574-695X.2006.00095.x","volume":"47","author":"M Fredriksson-Ahomaa","year":"2006","unstructured":"Fredriksson-Ahomaa M, Stolle A, Korkeala H (2006) Molecular epidemiology of Yersinia enterocolitica infections. FEMS Immunol Med Microbiol 47(3):315\u2013329","journal-title":"FEMS Immunol Med Microbiol"},{"issue":"11","key":"288_CR131","doi-asserted-by":"publisher","first-page":"811","DOI":"10.1038\/nrmicro1526","volume":"4","author":"GR Cornelis","year":"2006","unstructured":"Cornelis GR (2006) The type III secretion injectisome. Nat Rev Microbiol 4(11):811\u2013825","journal-title":"Nat Rev Microbiol"},{"issue":"5","key":"288_CR132","doi-asserted-by":"publisher","first-page":"1677","DOI":"10.1128\/jb.173.5.1677-1685.1991","volume":"173","author":"T Michiels","year":"1991","unstructured":"Michiels T, Cornelis GR (1991) Secretion of hybrid proteins by the Yersinia Yop export system. J Bacteriol 173(5):1677\u20131685","journal-title":"J Bacteriol"},{"issue":"3","key":"288_CR133","doi-asserted-by":"publisher","first-page":"583","DOI":"10.1111\/j.1365-2958.1994.tb02191.x","volume":"14","author":"M-P Sory","year":"1994","unstructured":"Sory M-P, Cornelis GR (1994) Translocation of a hybrid YopE-adenylate cyclase from Yersinia enterocolitica into HeLa cells. Mol Microbiol 14(3):583\u2013594","journal-title":"Mol Microbiol"},{"issue":"2","key":"288_CR134","doi-asserted-by":"publisher","first-page":"482","DOI":"10.1016\/j.biotechadv.2018.01.016","volume":"36","author":"F Bai","year":"2018","unstructured":"Bai F et al (2018) Bacterial type III secretion system as a protein delivery tool for a broad range of biomedical applications. Biotechnol Adv 36(2):482\u2013493","journal-title":"Biotechnol Adv"},{"issue":"5","key":"288_CR135","doi-asserted-by":"publisher","first-page":"1375","DOI":"10.1002\/(SICI)1521-4141(200005)30:5<1375::AID-IMMU1375>3.0.CO;2-M","volume":"30","author":"H R\u00fcssmann","year":"2000","unstructured":"R\u00fcssmann H et al (2000) Yersinia enterocolitica-mediated translocation of defined fusion proteins to the cytosol of mammalian cells results in peptide-specific MHC class I-restricted antigen presentation. Eur J Immunol 30(5):1375\u20131384","journal-title":"Eur J Immunol"},{"issue":"4","key":"288_CR136","doi-asserted-by":"publisher","first-page":"913","DOI":"10.1083\/jcb.201502074","volume":"211","author":"SJ Ittig","year":"2015","unstructured":"Ittig SJ et al (2015) A bacterial type III secretion-based protein delivery tool for broad applications in cell biology. J Cell Biol 211(4):913\u2013931","journal-title":"J Cell Biol"},{"issue":"1","key":"288_CR137","doi-asserted-by":"publisher","first-page":"500","DOI":"10.1186\/s12964-024-01874-6","volume":"22","author":"C Lebon","year":"2024","unstructured":"Lebon C et al (2024) Cytosolic delivery of monobodies using the bacterial type III secretion system inhibits oncogenic BCR: ABL1 signaling. Cell Commun Signal 22(1):500","journal-title":"Cell Commun Signal"},{"issue":"1","key":"288_CR138","doi-asserted-by":"publisher","first-page":"309","DOI":"10.1038\/msb.2009.62","volume":"5","author":"DM Widmaier","year":"2009","unstructured":"Widmaier DM et al (2009) Engineering the Salmonella type III secretion system to export spider silk monomers. Mol Syst Biol 5(1):309","journal-title":"Mol Syst Biol"},{"issue":"4","key":"288_CR139","doi-asserted-by":"publisher","first-page":"977","DOI":"10.1111\/j.1365-2958.1991.tb00773.x","volume":"5","author":"\u00c5 Forsberg","year":"1991","unstructured":"Forsberg \u00c5 et al (1991) The surface-located YopN protein is involved in calcium signal transduction in Yersinia pseudotuberculosis. Mol Microbiol 5(4):977\u2013986","journal-title":"Mol Microbiol"},{"issue":"1","key":"288_CR140","doi-asserted-by":"publisher","first-page":"185","DOI":"10.1038\/s41564-023-01545-1","volume":"9","author":"S Wimmi","year":"2024","unstructured":"Wimmi S et al (2024) Cytosolic sorting platform complexes shuttle type III secretion system effectors to the injectisome in Yersinia enterocolitica. Nat Microbiol 9(1):185\u2013199","journal-title":"Nat Microbiol"},{"issue":"4","key":"288_CR141","doi-asserted-by":"publisher","first-page":"1183","DOI":"10.1046\/j.1365-2958.2002.03241.x","volume":"46","author":"MF Feldman","year":"2002","unstructured":"Feldman MF et al (2002) SycE allows secretion of YopE-DHFR hybrids by the Yersinia enterocolitica type III Ysc system. Mol Microbiol 46(4):1183\u20131197","journal-title":"Mol Microbiol"},{"key":"288_CR142","doi-asserted-by":"publisher","DOI":"10.7554\/eLife.00792","volume":"2","author":"M Kudryashev","year":"2013","unstructured":"Kudryashev M et al (2013) In situ structural analysis of the Yersinia enterocolitica injectisome. eLife 2:e00792","journal-title":"eLife"},{"issue":"5","key":"288_CR143","doi-asserted-by":"publisher","first-page":"1785","DOI":"10.1007\/s00253-023-12411-9","volume":"107","author":"JM Liang","year":"2023","unstructured":"Liang JM et al (2023) Construction of a constitutively active type III secretion system for heterologous protein secretion. Appl Microbiol Biotechnol 107(5):1785\u20131800","journal-title":"Appl Microbiol Biotechnol"},{"issue":"1","key":"288_CR144","doi-asserted-by":"publisher","first-page":"82","DOI":"10.1038\/nsmb.2722","volume":"21","author":"J Radics","year":"2014","unstructured":"Radics J, K\u00f6nigsmaier L, Marlovits TC (2014) Structure of a pathogenic type 3 secretion system in action. Nat Struct Mol Biol 21(1):82\u201387","journal-title":"Nat Struct Mol Biol"},{"issue":"12","key":"288_CR145","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2019566118","volume":"118","author":"M-A LeBlanc","year":"2021","unstructured":"LeBlanc M-A et al (2021) Type III secretion system effector proteins are mechanically labile. Proc Natl Acad Sci 118(12):e2019566118","journal-title":"Proc Natl Acad Sci"},{"key":"288_CR146","doi-asserted-by":"publisher","first-page":"2128","DOI":"10.3389\/fmicb.2019.02128","volume":"10","author":"B Milne-Davies","year":"2019","unstructured":"Milne-Davies B et al (2019) Life after secretion-Yersinia enterocolitica rapidly toggles effector secretion and can resume cell division in response to changing external conditions. Front Microbiol 10:2128","journal-title":"Front Microbiol"},{"issue":"3","key":"288_CR147","doi-asserted-by":"publisher","first-page":"395","DOI":"10.1111\/mmi.14658","volume":"115","author":"B Milne-Davies","year":"2021","unstructured":"Milne-Davies B, Wimmi S, Diepold A (2021) Adaptivity and dynamics in type III secretion systems. Mol Microbiol 115(3):395\u2013411","journal-title":"Mol Microbiol"},{"issue":"1","key":"288_CR148","doi-asserted-by":"publisher","first-page":"2381","DOI":"10.1038\/s41467-020-16169-w","volume":"11","author":"F Lindner","year":"2020","unstructured":"Lindner F et al (2020) LITESEC-T3SS \u2013 light-controlled protein delivery into eukaryotic cells with high spatial and temporal resolution. Nat Commun 11(1):2381","journal-title":"Nat Commun"},{"issue":"2","key":"288_CR149","doi-asserted-by":"publisher","first-page":"1639","DOI":"10.1128\/AEM.72.2.1639-1644.2006","volume":"72","author":"Z Li Xuan","year":"2006","unstructured":"Li Xuan Z et al (2006) Enhanced benzaldehyde tolerance in Zymomonas mobilis biofilms and the potential of biofilm applications in fine-chemical production. Appl Environ Microbiol 72(2):1639\u20131644","journal-title":"Appl Environ Microbiol"},{"key":"288_CR150","doi-asserted-by":"publisher","first-page":"49","DOI":"10.1146\/annurev.micro.54.1.49","volume":"54","author":"G O\u2019Toole","year":"2000","unstructured":"O\u2019Toole G, Kaplan HB, Kolter R (2000) Biofilm formation as microbial development. Annu Rev Microbiol 54:49\u201379","journal-title":"Annu Rev Microbiol"},{"issue":"6","key":"288_CR151","doi-asserted-by":"publisher","first-page":"1255","DOI":"10.1007\/s00253-007-1108-4","volume":"76","author":"XZ Li","year":"2007","unstructured":"Li XZ, Hauer B, Rosche B (2007) Single-species microbial biofilm screening for industrial applications. Appl Microbiol Biotechnol 76(6):1255\u20131262","journal-title":"Appl Microbiol Biotechnol"},{"issue":"4","key":"288_CR152","first-page":"249","volume":"16","author":"MR Kunduru","year":"1996","unstructured":"Kunduru MR, Pometto III AL (1996) Continuous ethanol production by Zymomonas mobilis and Saccharomyces cerevisiae in biofilm reactors. J Ind Microbiol Biotechnol 16(4):249\u2013256","journal-title":"J Ind Microbiol Biotechnol"},{"issue":"1","key":"288_CR153","doi-asserted-by":"publisher","first-page":"128","DOI":"10.1186\/s40643-021-00483-2","volume":"8","author":"A Braga","year":"2021","unstructured":"Braga A et al (2021) Zymomonas mobilis as an emerging biotechnological chassis for the production of industrially relevant compounds. Bioresour Bioprocess 8(1):128","journal-title":"Bioresour Bioprocess"},{"key":"288_CR154","doi-asserted-by":"publisher","first-page":"1130405","DOI":"10.3389\/fbioe.2023.1130405","volume":"11","author":"LY Cao","year":"2023","unstructured":"Cao LY et al (2023) Regulation of biofilm formation in Zymomonas mobilis to enhance stress tolerance by heterologous expression of pfs and luxS. Front Bioeng Biotechnol 11:1130405","journal-title":"Front Bioeng Biotechnol"},{"key":"288_CR155","doi-asserted-by":"publisher","first-page":"1777","DOI":"10.3389\/fmicb.2019.01777","volume":"10","author":"T Todhanakasem","year":"2019","unstructured":"Todhanakasem T et al (2019) Zymomonas mobilis biofilm reactor for ethanol production using rice straw hydrolysate under continuous and repeated batch processes. Front Microbiol 10:1777","journal-title":"Front Microbiol"},{"issue":"6","key":"288_CR156","doi-asserted-by":"publisher","first-page":"2364","DOI":"10.1021\/acssuschemeng.2c06188","volume":"11","author":"K Li","year":"2023","unstructured":"Li K et al (2023) Electrochemical control of cell metabolism improves ethanol production of Zymomonas mobilis in an electro-fermentation system. ACS Sustain Chem Eng 11(6):2364\u20132374","journal-title":"ACS Sustain Chem Eng"},{"issue":"5","key":"288_CR157","doi-asserted-by":"publisher","first-page":"451","DOI":"10.1016\/j.nbt.2014.06.002","volume":"31","author":"T Todhanakasem","year":"2014","unstructured":"Todhanakasem T et al (2014) Biofilm production by Zymomonas mobilis enhances ethanol production and tolerance to toxic inhibitors from rice bran hydrolysate. New Biotechnol 31(5):451\u2013459","journal-title":"New Biotechnol"},{"issue":"1","key":"288_CR158","doi-asserted-by":"publisher","first-page":"239","DOI":"10.1007\/s12010-018-2821-4","volume":"187","author":"T Todhanakasem","year":"2019","unstructured":"Todhanakasem T et al (2019) Expression and extracellular secretion of endo-glucanase and xylanase by Zymomonas mobilis. Appl Biochem Biotechnol 187(1):239\u2013252","journal-title":"Appl Biochem Biotechnol"},{"issue":"4","key":"288_CR159","doi-asserted-by":"publisher","first-page":"249","DOI":"10.1007\/BF01570029","volume":"16","author":"MR Kunduru","year":"1996","unstructured":"Kunduru MR, Pometto AL (1996) Continuous ethanol production by Zymomonas mobilis and Saccharomyces cerevisiae in biofilm reactors. J Ind Microbiol 16(4):249\u2013256","journal-title":"J Ind Microbiol"},{"key":"288_CR160","doi-asserted-by":"publisher","first-page":"19","DOI":"10.1016\/j.apenergy.2012.04.032","volume":"100","author":"F Wirawan","year":"2012","unstructured":"Wirawan F et al (2012) Cellulosic ethanol production performance with SSF and SHF processes using immobilized Zymomonas mobilis. Appl Energy 100:19\u201326","journal-title":"Appl Energy"},{"issue":"3","key":"288_CR161","doi-asserted-by":"publisher","first-page":"196","DOI":"10.1016\/j.ejbt.2015.03.007","volume":"18","author":"T Todhanakasem","year":"2015","unstructured":"Todhanakasem T et al (2015) Fermentation of rice bran hydrolysate to ethanol using Zymomonas mobilis biofilm immobilization on DEAE-cellulose. Electron J Biotechnol 18(3):196\u2013201","journal-title":"Electron J Biotechnol"},{"key":"288_CR162","first-page":"313","volume":"18","author":"E Liebetanz","year":"1905","unstructured":"Liebetanz E (1905) Die Parasitischen Protozoen Des Wiederk\u00e4uermagens. Berliner Tieraerztliche Wochenschrift 18:313","journal-title":"Berliner Tieraerztliche Wochenschrift"},{"issue":"1","key":"288_CR163","doi-asserted-by":"publisher","first-page":"215","DOI":"10.1099\/00221287-99-1-215","volume":"99","author":"CG Orpin","year":"1977","unstructured":"Orpin CG (1977) The occurrence of chitin in the cell walls of the rumen organisms Neocallimastix frontalis, Piromonas communis and Sphaeromonas communis. J Gen Microbiol 99(1):215\u2013218","journal-title":"J Gen Microbiol"},{"issue":"5","key":"288_CR164","doi-asserted-by":"publisher","first-page":"509","DOI":"10.1016\/j.mycres.2007.03.004","volume":"111","author":"DS Hibbett","year":"2007","unstructured":"Hibbett DS et al (2007) A higher-level phylogenetic classification of the fungi. Mycol Res 111(5):509\u2013547","journal-title":"Mycol Res"},{"key":"288_CR165","doi-asserted-by":"publisher","unstructured":"Hanafy RA et al (2022) Taxonomy of the anaerobic gut fungi (Neocallimastigomycota): a review of classification criteria and description of current taxa. Int J Syst Evol Microbiol 72(7). https:\/\/doi.org\/10.1099\/ijsem.0.005322","DOI":"10.1099\/ijsem.0.005322"},{"key":"288_CR166","doi-asserted-by":"publisher","unstructured":"Pratt CJ et al (2023) Testudinimyces gracilis gen. nov, sp. nov. and Astrotestudinimyces divisus gen. nov, sp. nov., two novel, deep-branching anaerobic gut fungal genera from tortoise faeces. Int J Syst Evol Microbiol 73(5). https:\/\/doi.org\/10.1099\/ijsem.0.005921","DOI":"10.1099\/ijsem.0.005921"},{"key":"288_CR167","doi-asserted-by":"publisher","unstructured":"Hanafy RA et al (2023) Phylogenomic analysis of the Neocallimastigomycota: proposal of Caecomycetaceae fam. nov., Piromycetaceae fam. nov., and emended description of the families Neocallimastigaceae and Anaeromycetaceae. Int J Syst Evol Microbiol 73(2). https:\/\/doi.org\/10.1099\/ijsem.0.005735","DOI":"10.1099\/ijsem.0.005735"},{"issue":"1","key":"288_CR168","doi-asserted-by":"publisher","first-page":"3798","DOI":"10.1038\/s41467-023-39508-z","volume":"14","author":"CH Meili","year":"2023","unstructured":"Meili CH et al (2023) Patterns and determinants of the global herbivorous mycobiome. Nat Commun 14(1):3798","journal-title":"Nat Commun"},{"issue":"D1","key":"288_CR169","doi-asserted-by":"publisher","first-page":"D699","DOI":"10.1093\/nar\/gkt1183","volume":"42","author":"IV Grigoriev","year":"2014","unstructured":"Grigoriev IV et al (2014) MycoCosm portal: gearing up for 1000 fungal genomes. Nucleic Acids Res 42(D1):D699\u2013D704","journal-title":"Nucleic Acids Res"},{"issue":"4","key":"288_CR170","doi-asserted-by":"publisher","first-page":"526","DOI":"10.1093\/evlett\/qrae009","volume":"8","author":"MA Ciach","year":"2024","unstructured":"Ciach MA et al (2024) The interkingdom horizontal gene transfer in 44 early diverging fungi boosted their metabolic, adaptive, and immune capabilities. Evol Lett 8(4):526\u2013538","journal-title":"Evol Lett"},{"issue":"15","key":"288_CR171","first-page":"e00988","volume":"85","author":"L Murphy Chelsea","year":"2019","unstructured":"Murphy Chelsea L et al (2019) Horizontal gene transfer as an indispensable driver for evolution of neocallimastigomycota into a distinct gut-dwelling fungal lineage. Appl Environ Microbiol 85(15):e00988\u2013e00919","journal-title":"Appl Environ Microbiol"},{"key":"288_CR172","doi-asserted-by":"publisher","unstructured":"Wilken SE et al (2021) Experimentally validated reconstruction and analysis of a genome-scale metabolic model of an anaerobic Neocallimastigomycota fungus. mSystems 6(1). https:\/\/doi.org\/10.1128\/msystems.00002-21","DOI":"10.1128\/msystems.00002-21"},{"issue":"12","key":"288_CR173","doi-asserted-by":"publisher","first-page":"4301","DOI":"10.1128\/AEM.07959-11","volume":"78","author":"J Krauss","year":"2012","unstructured":"Krauss J, Zverlov VV, Schwarz WH (2012) In vitro reconstitution of the complete Clostridium thermocellum cellulosome and synergistic activity on crystalline cellulose. Appl Environ Microbiol 78(12):4301\u20134307","journal-title":"Appl Environ Microbiol"},{"issue":"1","key":"288_CR174","doi-asserted-by":"publisher","first-page":"177","DOI":"10.1099\/00221287-134-1-177","volume":"134","author":"YW Ho","year":"1988","unstructured":"Ho YW, Abdullah N, Jalaludin S (1988) Penetrating structures of anaerobic rumen fungi in cattle and swamp buffalo. Microbiology 134(1):177\u2013181","journal-title":"Microbiology"},{"issue":"5","key":"288_CR175","doi-asserted-by":"publisher","first-page":"1389","DOI":"10.1046\/j.1365-2958.2003.03912.x","volume":"51","author":"B Boxma","year":"2004","unstructured":"Boxma B et al (2004) The anaerobic chytridiomycete fungus Piromyces sp. E2 produces ethanol via pyruvate:formate lyase and an alcohol dehydrogenase E. Mol Microbiol 51(5):1389\u20131399","journal-title":"Mol Microbiol"},{"issue":"7029","key":"288_CR176","doi-asserted-by":"publisher","first-page":"74","DOI":"10.1038\/nature03343","volume":"434","author":"B Boxma","year":"2005","unstructured":"Boxma B et al (2005) An anaerobic mitochondrion that produces hydrogen. Nature 434(7029):74\u201379","journal-title":"Nature"},{"key":"288_CR177","doi-asserted-by":"publisher","unstructured":"Li Y et al (2021) Interactions between anaerobic fungi and methanogens in the rumen and their biotechnological potential in biogas production from lignocellulosic materials. Microorganisms 9. https:\/\/doi.org\/10.3390\/microorganisms9010190","DOI":"10.3390\/microorganisms9010190"},{"issue":"1","key":"288_CR178","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1111\/1574-6941.12383","volume":"90","author":"RJ Gruninger","year":"2014","unstructured":"Gruninger RJ et al (2014) Anaerobic fungi (phylum Neocallimastigomycota): advances in understanding their taxonomy, life cycle, ecology, role and biotechnological potential. FEMS Microbiol Ecol 90(1):1\u201317","journal-title":"FEMS Microbiol Ecol"},{"key":"288_CR179","doi-asserted-by":"publisher","first-page":"41","DOI":"10.1007\/978-3-319-21993-6_2","volume-title":"Biogas science and technology","author":"V Dollhofer","year":"2015","unstructured":"Dollhofer V et al (2015) Anaerobic fungi and their potential for biogas production. In: Guebitz GM et al (eds) Biogas science and technology. Springer International Publishing, Cham, pp 41\u201361"},{"issue":"18","key":"288_CR180","doi-asserted-by":"publisher","DOI":"10.1073\/pnas.2019855118","volume":"118","author":"CL Swift","year":"2021","unstructured":"Swift CL et al (2021) Anaerobic gut fungi are an untapped reservoir of natural products. Proc Natl Acad Sci 118(18):e2019855118","journal-title":"Proc Natl Acad Sci"},{"key":"288_CR181","doi-asserted-by":"publisher","first-page":"45","DOI":"10.1016\/j.ymben.2017.09.008","volume":"44","author":"S Sepp\u00e4l\u00e4","year":"2017","unstructured":"Sepp\u00e4l\u00e4 S et al (2017) The importance of sourcing enzymes from non-conventional fungi for metabolic engineering and biomass breakdown. Metab Eng 44:45\u201359","journal-title":"Metab Eng"},{"issue":"3","key":"288_CR182","doi-asserted-by":"publisher","first-page":"201","DOI":"10.1016\/S0377-8401(00)00216-9","volume":"88","author":"SS Lee","year":"2000","unstructured":"Lee SS, Ha JK, Cheng KJ (2000) Influence of an anaerobic fungal culture administration on in vivo ruminal fermentation and nutrient digestion. Anim Feed Sci Technol 88(3):201\u2013217","journal-title":"Anim Feed Sci Technol"},{"key":"288_CR183","doi-asserted-by":"publisher","unstructured":"Hartinger T, Zebeli Q (2021) The present role and new potentials of anaerobic fungi in ruminant nutrition. J Fungi 7. https:\/\/doi.org\/10.3390\/jof7030200","DOI":"10.3390\/jof7030200"},{"issue":"1","key":"288_CR184","first-page":"107","volume":"25","author":"S Agustina","year":"2025","unstructured":"Agustina S et al (2025) The addition of anaerobic fungi isolates from buffalo rumen to increase fiber digestibility, fermentation, and microbial population in ruminants. Biodivers J Biol Divers 25(1):107","journal-title":"Biodivers J Biol Divers"},{"issue":"5","key":"288_CR185","doi-asserted-by":"publisher","first-page":"984","DOI":"10.1111\/1751-7915.12818","volume":"10","author":"K Timmis","year":"2017","unstructured":"Timmis K et al (2017) The contribution of microbial biotechnology to sustainable development goals. Microb Biotechnol 10(5):984\u2013987","journal-title":"Microb Biotechnol"},{"key":"288_CR186","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1016\/j.mib.2015.02.002","volume":"25","author":"J Volmer","year":"2015","unstructured":"Volmer J, Schmid A, B\u00fchler B (2015) Guiding bioprocess design by microbial ecology. Curr Opin Microbiol 25:25\u201332","journal-title":"Curr Opin Microbiol"},{"key":"288_CR187","volume-title":"Advances in biochemical engineering\/biotechnology","author":"E Hakalehto","year":"2025","unstructured":"Hakalehto E (2025) Mixed cultures in industrial bioprocesses. In: Ulber R (ed) Advances in biochemical engineering\/biotechnology, vol 189. Springer, Cham"},{"issue":"11","key":"288_CR188","doi-asserted-by":"publisher","first-page":"3049","DOI":"10.1002\/jctb.7208","volume":"97","author":"A Schmeckebier","year":"2022","unstructured":"Schmeckebier A, Zayed A, Ulber R (2022) Productive biofilms: from prokaryotic to eukaryotic systems. J Chem Technol Biotechnol 97(11):3049\u20133064","journal-title":"J Chem Technol Biotechnol"},{"issue":"5","key":"288_CR189","doi-asserted-by":"publisher","first-page":"276","DOI":"10.1038\/s41579-023-00985-0","volume":"22","author":"L-A Philipp","year":"2024","unstructured":"Philipp L-A et al (2024) Beneficial applications of biofilms. Nat Rev Microbiol 22(5):276\u2013290","journal-title":"Nat Rev Microbiol"},{"issue":"8","key":"288_CR190","first-page":"2775","volume":"9","author":"M St\u00f6ckl","year":"2024","unstructured":"St\u00f6ckl M, Gem\u00fcnde A, Holtmann D (2024) Microbial electrotechnology \u2013 intensification of bioprocesses through the combination of electrochemistry and biotechnology. Phys Sci Rev 9(8):2775\u20132793","journal-title":"Phys Sci Rev"},{"key":"288_CR191","doi-asserted-by":"publisher","first-page":"72","DOI":"10.1016\/j.copbio.2021.01.006","volume":"67","author":"M Diender","year":"2021","unstructured":"Diender M, Parera Olm I, Sousa DZ (2021) Synthetic co-cultures: novel avenues for bio-based processes. Curr Opin Biotechnol 67:72\u201379","journal-title":"Curr Opin Biotechnol"},{"issue":"20","key":"288_CR192","doi-asserted-by":"publisher","first-page":"8481","DOI":"10.1007\/s00253-014-6005-z","volume":"98","author":"A Sydow","year":"2014","unstructured":"Sydow A et al (2014) Electroactive bacteria \u2013 molecular mechanisms and genetic tools. Appl Microbiol Biotechnol 98(20):8481\u20138495","journal-title":"Appl Microbiol Biotechnol"},{"issue":"9","key":"288_CR193","doi-asserted-by":"publisher","first-page":"1282","DOI":"10.1002\/celc.201600079","volume":"3","author":"C Koch","year":"2016","unstructured":"Koch C, Harnisch F (2016) Is there a specific ecological niche for electroactive microorganisms? ChemElectroChem 3(9):1282\u20131295","journal-title":"ChemElectroChem"},{"issue":"6","key":"288_CR194","doi-asserted-by":"publisher","first-page":"1185","DOI":"10.1016\/j.cell.2016.02.004","volume":"164","author":"J Nielsen","year":"2016","unstructured":"Nielsen J, Keasling JD (2016) Engineering cellular metabolism. Cell 164(6):1185\u20131197","journal-title":"Cell"},{"key":"288_CR195","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1016\/B978-0-323-99911-3.00010-5","volume-title":"Current developments in biotechnology and bioengineering","author":"J Dharmaraja","year":"2023","unstructured":"Dharmaraja J et al (2023) Chapter 2: Design and scale-up of photobioreactors. In: Sirohi R et al (eds) Current developments in biotechnology and bioengineering. Elsevier, pp 11\u201332"},{"issue":"3","key":"288_CR196","doi-asserted-by":"publisher","first-page":"895","DOI":"10.1002\/bit.28023","volume":"119","author":"M Kretschmer","year":"2022","unstructured":"Kretschmer M et al (2022) A rotating bioreactor for the production of biofilms at the solid\u2013air interface. Biotechnol Bioeng 119(3):895\u2013906","journal-title":"Biotechnol Bioeng"},{"key":"288_CR197","doi-asserted-by":"publisher","DOI":"10.1016\/j.bej.2019.107398","volume":"153","author":"O Paladino","year":"2020","unstructured":"Paladino O, Neviani M (2020) Scale-up of photo-bioreactors for microalgae cultivation by \u03c0-theorem. Biochem Eng J 153:107398","journal-title":"Biochem Eng J"},{"issue":"2","key":"288_CR198","doi-asserted-by":"publisher","first-page":"121","DOI":"10.1002\/elsc.201800160","volume":"19","author":"F Enzmann","year":"2019","unstructured":"Enzmann F et al (2019) Same but different-Scale up and numbering up in electrobiotechnology and photobiotechnology. Eng Life Sci 19(2):121\u2013132","journal-title":"Eng Life Sci"}],"container-title":["Advances in Biochemical Engineering\/Biotechnology","Unconventional Organisms in Biotechnology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/10_2025_288","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,7,15]],"date-time":"2026-07-15T05:01:28Z","timestamp":1784091688000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/10_2025_288"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025]]},"ISBN":["9783032087362","9783032087379"],"references-count":198,"URL":"https:\/\/doi.org\/10.1007\/10_2025_288","relation":{},"ISSN":["0724-6145","1616-8542"],"issn-type":[{"value":"0724-6145","type":"print"},{"value":"1616-8542","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025]]},"assertion":[{"value":"9 September 2025","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}}]}}