{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T17:58:56Z","timestamp":1725559136866},"publisher-location":"Berlin, Heidelberg","reference-count":30,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540260325"},{"type":"electronic","value":"9783540321118"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2005]]},"DOI":"10.1007\/11428831_95","type":"book-chapter","created":{"date-parts":[[2010,7,14]],"date-time":"2010-07-14T00:14:05Z","timestamp":1279066445000},"page":"766-774","source":"Crossref","is-referenced-by-count":3,"title":["Non-gradient, Sequential Algorithm for Simulation of Nascent Polypeptide Folding"],"prefix":"10.1007","author":[{"given":"Lech","family":"Znamirowski","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"95_CR1","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1093\/nass\/1.1.235","volume":"1","author":"H.M. Berman","year":"2001","unstructured":"Berman, H.M., et al.: The Protein Data Bank. Nucleic Acid Res.\u00a01, 235\u2013242 (2001)","journal-title":"Nucleic Acid Res."},{"key":"95_CR2","unstructured":"Klotho: Biochemical Compounds Declarative Database \u2013 Alphabetical Compound List (2001), \n                    \n                      http:\/\/www.ibc.wustl.edu\/moirai\/klotho\/compound_list.html"},{"key":"95_CR3","unstructured":"Znamirowski, L., Zukowska, E.D.: Simulation of Environment-Forced Conformations in the Polypeptide Chains. In: Proc. of the ICSEE 2003, 2003 Western MultiConf., The Soc. for Mod. and Sim. Int., Orlando, Florida, January 19-23, pp. 87\u201391 (2003)"},{"key":"95_CR4","volume-title":"Monte Carlo Methods","author":"R. Zieli\u0144ski","year":"1970","unstructured":"Zieli\u0144ski, R.: Monte Carlo Methods. WNT Publisher, Warsaw (1970) (in Polish)"},{"key":"95_CR5","volume-title":"The White Book. Biochemical Nomenclature and Related Documents. IUPAC-IUBMB Joint Commission","year":"1992","unstructured":"Liebecq, C. (ed.): The White Book. Biochemical Nomenclature and Related Documents. IUPAC-IUBMB Joint Commission, 2nd edn. Portland Press, London (1992)","edition":"2"},{"key":"95_CR6","unstructured":"Cell Signaling Technology Database: Pathways. Cell Sign. Techn. Inc., Beverly, MA (2003), info@cellsignal.com"},{"key":"95_CR7","volume-title":"Biochemistry","author":"L. Stryer","year":"1994","unstructured":"Stryer, L.: Biochemistry. W. H. Freeman and Company, New York (1994)"},{"key":"95_CR8","unstructured":"Heater, S.H., Zukowska, E.D., Znamirowski, L.: Information Processing in the Signal Cascades of Nanonetworks. In: ICCE-10, Tenth Ann. Intern. Conf. on Composites\/Nano Engr., Intern. Comm. for Composite Engr., New Orleans, Louisiana, July 20-26, pp. 233\u2013234 (2003)"},{"key":"95_CR9","first-page":"506","volume":"23","author":"G.N. Ramachandran","year":"1968","unstructured":"Ramachandran, G.N., Sasisekharan, V.: Conformation of polypeptides and proteins. Advanced Protein Chem.\u00a023, 506\u2013517 (1968)","journal-title":"Advanced Protein Chem."},{"key":"95_CR10","first-page":"768","volume":"5","author":"S. Hovmoller","year":"2002","unstructured":"Hovmoller, S., Zhou, T., Ohlson, T.: Conformations of amino acids in protein. Acta Cryst.\u00a05, 768\u2013776 (2002)","journal-title":"Acta Cryst."},{"key":"95_CR11","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1038\/35011000","volume":"406","author":"D. Baker","year":"2000","unstructured":"Baker, D.: A surprising simplicity to protein folding. Nature\u00a0406, 39\u201342 (2000)","journal-title":"Nature"},{"key":"95_CR12","doi-asserted-by":"publisher","first-page":"55","DOI":"10.1016\/S0010-4655(01)00316-2","volume":"142","author":"Y. Okamoto","year":"2001","unstructured":"Okamoto, Y.: Protein folding simulations and structure predictions. Computer Physics Comm.\u00a0142, 55\u201363 (2001)","journal-title":"Computer Physics Comm."},{"key":"95_CR13","doi-asserted-by":"publisher","first-page":"449","DOI":"10.1023\/A:1026593113633","volume":"6","author":"C. Wei","year":"2000","unstructured":"Wei, C., Zhang, Y., Yang, K.: Chaperone-Mediated Refolding of Recombinant Prochymosin. Journal of Protein Chemistry\u00a06, 449\u2013456 (2000)","journal-title":"Journal of Protein Chemistry"},{"key":"95_CR14","first-page":"293","volume-title":"Proc. of the Fourth IASTED Intern. Conf. on MODELLING, SIMULATION, AND OPTIMIZATION MSO 2004","author":"A.W. Znamirowski","year":"2004","unstructured":"Znamirowski, A.W., Znamirowski, L.: Two-Phase Simulation of Nascent Protein Folding. In: Proc. of the Fourth IASTED Intern. Conf. on MODELLING, SIMULATION, AND OPTIMIZATION MSO 2004, Kauai, Hawaii, August 17-19, pp. 293\u2013298. ACTA Press, Anaheim-Calgary-Zurich (2004)"},{"key":"95_CR15","unstructured":"Warecki, S., Znamirowski, L.: Random Simulation of the Nanostructures Conformations. In: Intern. Conference on Computing, Communication and Control Technology, Proceedings The Intern. Institute of Informatics and Systemics, Austin, Texas, August 14-17, vol.\u00a0I, pp. 388\u2013393 (2004)"},{"key":"95_CR16","unstructured":"Ponder, J.: TINKER \u2013 Software Tools for Molecular Design. Dept. of Biochemistry & Molecular Biophysics Washington University. School of Medicine, St. Louis, \n                    \n                      http:\/\/dasher.wustl.edu\/tinker\n                    \n                    \n                   (2001)"},{"key":"95_CR17","volume-title":"Modelling Molecular Structures","author":"A. Hinchliffe","year":"2000","unstructured":"Hinchliffe, A.: Modelling Molecular Structures, 2nd edn. John Wiley & Sons, Ltd., Chichester (2000)","edition":"2"},{"key":"#cr-split#-95_CR18.1","unstructured":"Sayle, R.: RasMol, Molecular Graphics Visualization Tool. Biomolecular Structures Group. Glaxo Wellcome Research & Development, Stevenage, Hartfordshire (1998);"},{"key":"#cr-split#-95_CR18.2","unstructured":"H. J. Bernstein v.2.7.1.1, rasmol@bernstein-plus-sons.com"},{"key":"95_CR19","volume-title":"Dynamic Programming","author":"R. Bellman","year":"1957","unstructured":"Bellman, R.: Dynamic Programming. Princeton University Press, Princeton (1957)"},{"issue":"4","key":"95_CR20","first-page":"585","volume":"13","author":"S. W\u0119grzyn","year":"2003","unstructured":"W\u0119grzyn, S., Winiarczyk, R., Znamirowski, L.: Self-replication Processes in Nanosystems of Informatics. Int. Journ. of Applied Math. and Comp. Science\u00a013(4), 585\u2013591 (2003)","journal-title":"Int. Journ. of Applied Math. and Comp. Science"},{"key":"95_CR21","volume-title":"Physical Chemistry","author":"P.W. Atkins","year":"1998","unstructured":"Atkins, P.W.: Physical Chemistry, 6th edn. W. H. Freeman & Co., New York (1998)","edition":"6"},{"key":"95_CR22","doi-asserted-by":"publisher","first-page":"215","DOI":"10.1016\/0010-4655(95)00049-L","volume":"91","author":"M. Levitt","year":"1995","unstructured":"Levitt, M., Hirshberg, M., Sharon, R., Daggett, V.: Potential Energy Function and Parameters for Simulation of the Molecular Dynamics of Protein and Nucleic Acids in Solution. Comp. Physics Comm.\u00a091, 215\u2013231 (1995)","journal-title":"Comp. Physics Comm."},{"key":"95_CR23","volume-title":"Organic Chemistry","author":"J. McMurry","year":"1996","unstructured":"McMurry, J.: Organic Chemistry, 4th edn. Brooks\/Cole Publ. Co., Pacific Grove (1996)","edition":"4"},{"issue":"247","key":"95_CR24","doi-asserted-by":"publisher","first-page":"335","DOI":"10.2307\/2280232","volume":"44","author":"N. Metropolis","year":"1949","unstructured":"Metropolis, N., Ulam, S.: The Monte Carlo Method. Journal of the American Stat. Assoc.\u00a044(247), 335\u2013341 (1949)","journal-title":"Journal of the American Stat. Assoc."},{"key":"95_CR25","doi-asserted-by":"publisher","first-page":"3586","DOI":"10.1021\/jp973084f","volume":"102","author":"A.D. MacKerrell","year":"1998","unstructured":"MacKerrell, A.D., et al.: All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins. Journ. Phys. Chem. B\u00a0102, 3586\u20133616 (1998)","journal-title":"Journ. Phys. Chem. B"},{"key":"95_CR26","doi-asserted-by":"publisher","first-page":"5179","DOI":"10.1021\/ja00124a002","volume":"117","author":"W.D. Cornell","year":"1995","unstructured":"Cornell, W.D., et al.: A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules. Journ. Am. Chem. Soc.\u00a0117, 5179\u20135197 (1995)","journal-title":"Journ. Am. Chem. Soc."},{"key":"95_CR27","unstructured":"The Nucleic Acid DataBase Project. Rutgers, The State University of New Jersey, Camden, Newark, New Brunswick\/Piscataway (2001), \n                    \n                      http:\/\/ndb-mirror-2.rutgers.edu\/mmcif\/index.html"},{"key":"95_CR28","unstructured":"Callaway, J., Cummings, M., et al.: Protein Data Bank Contents: Atomic Coordinate Entry Format Description. Federal Govern. Agency (1996), \n                    \n                      http:\/\/www.rcsb.org\/pdb\/docs\/format\/pdbguide2.2\/"},{"key":"95_CR29","volume-title":"Molecular Cell Biology","author":"H. Lodish","year":"2001","unstructured":"Lodish, H., Berk, A., Zipursky, S.L., et al.: Molecular Cell Biology, 4th edn. W. H. Freeman and Comp., New York (2001)","edition":"4"}],"container-title":["Lecture Notes in Computer Science","Computational Science \u2013 ICCS 2005"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/11428831_95","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,3,16]],"date-time":"2019-03-16T14:52:28Z","timestamp":1552747948000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/11428831_95"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2005]]},"ISBN":["9783540260325","9783540321118"],"references-count":30,"URL":"https:\/\/doi.org\/10.1007\/11428831_95","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2005]]}}}