{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T15:31:57Z","timestamp":1725550317113},"publisher-location":"Berlin, Heidelberg","reference-count":23,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540291046"},{"type":"electronic","value":"9783540317265"}],"license":[{"start":{"date-parts":[[2005,1,1]],"date-time":"2005-01-01T00:00:00Z","timestamp":1104537600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2005]]},"DOI":"10.1007\/11560500_24","type":"book-chapter","created":{"date-parts":[[2005,9,27]],"date-time":"2005-09-27T08:24:53Z","timestamp":1127809493000},"page":"265-276","source":"Crossref","is-referenced-by-count":6,"title":["The Architecture of a Proteomic Network in the Yeast"],"prefix":"10.1007","author":[{"given":"Emad","family":"Ramadan","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Christopher","family":"Osgood","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alex","family":"Pothen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"24_CR1","doi-asserted-by":"publisher","first-page":"141","DOI":"10.1038\/415141a","volume":"415","author":"A.-C. Gavine","year":"2002","unstructured":"Gavine, A.-C., Bosche, M., Krause, R., et al.: Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature\u00a0415, 141\u2013147 (2002)","journal-title":"Nature"},{"key":"24_CR2","doi-asserted-by":"publisher","first-page":"3685","DOI":"10.1073\/pnas.071033998","volume":"98","author":"T. Achsel","year":"2001","unstructured":"Achsel, T., et al.: The Sm domain is an ancient RNA-binding motif with oligo(U) specificity. Procs. Natl. Acad. Sci.\u00a098, 3685\u20133689 (2001)","journal-title":"Procs. Natl. Acad. Sci."},{"key":"24_CR3","doi-asserted-by":"crossref","first-page":"8827","DOI":"10.1523\/JNEUROSCI.22-20-08827.2002","volume":"22","author":"F. Angenstein","year":"2002","unstructured":"Angenstein, F., et al.: A receptor for activated C kinase is part of messenger ribonucleoprotein complexes associated with polyA-mRNA in neurons. J. Neurosci.\u00a022, 8827\u20138837 (2002)","journal-title":"J. Neurosci."},{"issue":"2","key":"24_CR4","first-page":"27","volume":"4","author":"G.D. Bader","year":"2003","unstructured":"Bader, G.D., Hogue, C.W.: An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics\u00a04(2), 27 (2003)","journal-title":"BMC Bioinformatics"},{"key":"24_CR5","doi-asserted-by":"publisher","first-page":"17740","DOI":"10.1074\/jbc.M909464199","volume":"275","author":"X. Bi","year":"2000","unstructured":"Bi, X., Goss, D.: Wheat germ poly (A)-binding protein increases ATPase and the RNA helicase activity of translation initiation factors eIF4A, eIF4B and eIF-iso-4F. J. Biol. Chem.\u00a0275, 17740\u201317746 (2000)","journal-title":"J. Biol. Chem."},{"volume-title":"Handbook of Graphs and Networks","year":"2003","key":"24_CR6","unstructured":"Bornholdt, S., Schuster, H.G. (eds.): Handbook of Graphs and Networks. Wiley VCH, Chichester (2003)"},{"issue":"25","key":"24_CR7","doi-asserted-by":"publisher","first-page":"15879","DOI":"10.1073\/pnas.252631999","volume":"99","author":"F. Chung","year":"2002","unstructured":"Chung, F., Lu, L.: The average distances in random graphs with given expected degrees. Procs. Natl. Acad. Sci.\u00a099(25), 15879\u201315882 (2002)","journal-title":"Procs. Natl. Acad. Sci."},{"key":"24_CR8","doi-asserted-by":"crossref","unstructured":"Dhillon, I.S.: Co-clustering documents and words using bipartite spectral graph partitioning. In: Procs. ACM Internatl. Conf. Knowledge Discovery in Data Mining (KDD) (2001)","DOI":"10.1145\/502512.502550"},{"key":"24_CR9","doi-asserted-by":"crossref","unstructured":"Ding, C., He, X., Meraz, R.F., Holbrook, S.R.: A unified representation of multi-protein complex data for modeling interaction networks. Proteins: Structure, Function, and Genetics (2004) (to appear)","DOI":"10.1002\/prot.20147"},{"key":"24_CR10","unstructured":"Ding, C., He, X., Zha, H., Gu, M., Simon, H.: A MinMaxCut spectral method for data clustering and graph partitioning. In: Procs. IEEE Internatl. Conf. Data Mining (ICDM), pp. 107\u2013114 (2001)"},{"key":"24_CR11","doi-asserted-by":"publisher","first-page":"95","DOI":"10.1002\/1097-0061(20000630)17:2<95::AID-YEA16>3.0.CO;2-H","volume":"17","author":"M. Fromont-Racine","year":"2000","unstructured":"Fromont-Racine, M., et al.: Genome-wide protein interaction screens reveal functional networks involving Sm-like proteins. Yeast\u00a017, 95\u2013110 (2000)","journal-title":"Yeast"},{"key":"24_CR12","doi-asserted-by":"publisher","first-page":"1555","DOI":"10.1093\/nar\/21.7.1555","volume":"21","author":"F. Galisson","year":"1993","unstructured":"Galisson, F., Legrain, P.: The biochemical defects of PRP4-1 and PRP6-1 yeast splicing mutants reveal that the PRP6 protein is required for the accumulation of the [U4\/U6.U5] tri-snRNP. Nucl. Acids Res.\u00a021, 1555\u20131562 (1993)","journal-title":"Nucl. Acids Res."},{"key":"24_CR13","doi-asserted-by":"publisher","first-page":"839","DOI":"10.1038\/nbt1116","volume":"23","author":"J.D.J. Han","year":"2005","unstructured":"Han, J.D.J., Dupuy, D., Bertin, N., et al.: Effect of sampling on topology predictions of protein-protein interaction networks. Nature Biotechnology\u00a023, 839\u2013844 (2005)","journal-title":"Nature Biotechnology"},{"key":"24_CR14","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1038\/35011540","volume":"402","author":"L.H. Hartwell","year":"1999","unstructured":"Hartwell, L.H., Hopfeld, J.J., Leibler, S., Murray, A.W.: From molecular to modular cell biology. Nature\u00a0402, C47\u2013C52 (1999)","journal-title":"Nature"},{"key":"24_CR15","doi-asserted-by":"publisher","first-page":"180","DOI":"10.1038\/415180a","volume":"415","author":"Y. Ho","year":"2002","unstructured":"Ho, Y., Gruhler, A., Heilbut, A., et al.: Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature\u00a0415, 180\u2013193 (2002)","journal-title":"Nature"},{"key":"24_CR16","doi-asserted-by":"publisher","first-page":"4569","DOI":"10.1073\/pnas.061034498","volume":"98","author":"T. Ito","year":"2001","unstructured":"Ito, T., Chiba, T., Ozawa, R., et al.: A comprehensive two hybrid analysis to explore the yeast protein interactome. Procs. Natl. Acad. Sci.\u00a098, 4569\u20134574 (2001)","journal-title":"Procs. Natl. Acad. Sci."},{"key":"24_CR17","doi-asserted-by":"publisher","first-page":"1025","DOI":"10.1109\/T-C.1973.223640","volume":"C-22","author":"A.A. Jarvis","year":"1973","unstructured":"Jarvis, A.A., Patrick, E.A.: Clustering based on a similarity measure based on shared nearest neighbors. IEEE Trans. Computers\u00a0C-22, 1025\u20131034 (1973)","journal-title":"IEEE Trans. Computers"},{"key":"24_CR18","doi-asserted-by":"publisher","first-page":"3364","DOI":"10.1093\/nar\/gkh664","volume":"32","author":"C. Noble","year":"2004","unstructured":"Noble, C., et al.: Rna14-Rna15 assembly mediates the RNA-binding capability of Saccharomyces cerevisiae cleavage factor IA. Nucl. Acids Res.\u00a032, 3364\u20133375 (2004)","journal-title":"Nucl. Acids Res."},{"key":"24_CR19","first-page":"8","volume-title":"Procs. Workshop High Performance Computational Biology (HICOMB)","author":"E. Ramadan","year":"2004","unstructured":"Ramadan, E., Tarafdar, A., Pothen, A.: A hypergraph model for the yeast protein complex network. In: Procs. Workshop High Performance Computational Biology (HICOMB), p. 8. IEEE \/ ACM, Los Alamitos (2004) (CDROM)"},{"key":"24_CR20","doi-asserted-by":"publisher","first-page":"848","DOI":"10.1073\/pnas.90.3.848","volume":"90","author":"B.C. Rymond","year":"1993","unstructured":"Rymond, B.C.: Convergent transcripts of the yeast PRP38-SMD1 locus encode two essential splicing factors, including the D1 core polypeptide of small nuclear ribonucleoprotein particles. Procs. Natl. Acad. Sci.\u00a090, 848\u2013852 (1993)","journal-title":"Procs. Natl. Acad. Sci."},{"key":"24_CR21","doi-asserted-by":"publisher","first-page":"12123","DOI":"10.1073\/pnas.2032324100","volume":"100","author":"V. Spirin","year":"2003","unstructured":"Spirin, V., Mirny, L.A.: Protein complexes and functional modules in molecular networks. Procs. Natl. Acad. Sci.\u00a0100, 12123\u201312128 (2003)","journal-title":"Procs. Natl. Acad. Sci."},{"key":"24_CR22","volume-title":"Introduction to Datamining","author":"P. Tan","year":"2005","unstructured":"Tan, P., Steinbach, M., Kumar, V.: Introduction to Datamining. Addison Wesley, Reading (2005)"},{"key":"24_CR23","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1093\/genetics\/147.1.101","volume":"147","author":"S. Urushiyama","year":"1997","unstructured":"Urushiyama, S., et al.: The prp1+ gene required for pre-mRNA splicing in Schizosaccharomyces pombe encodes a protein that contains TPR motifs and is similar to Prp6p of budding yeast. Genetics\u00a0147, 101\u2013115 (1997)","journal-title":"Genetics"}],"container-title":["Lecture Notes in Computer Science","Computational Life Sciences"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/11560500_24","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,7,17]],"date-time":"2021-07-17T23:04:26Z","timestamp":1626563066000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/11560500_24"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2005]]},"ISBN":["9783540291046","9783540317265"],"references-count":23,"URL":"https:\/\/doi.org\/10.1007\/11560500_24","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2005]]}}}