{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T20:06:28Z","timestamp":1725566788645},"publisher-location":"Berlin, Heidelberg","reference-count":35,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540296744"},{"type":"electronic","value":"9783540316589"}],"license":[{"start":{"date-parts":[[2005,1,1]],"date-time":"2005-01-01T00:00:00Z","timestamp":1104537600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2005]]},"DOI":"10.1007\/11573067_27","type":"book-chapter","created":{"date-parts":[[2005,10,21]],"date-time":"2005-10-21T06:38:36Z","timestamp":1129876716000},"page":"262-273","source":"Crossref","is-referenced-by-count":3,"title":["Simultaneous Scheduling of Replication and Computation for Bioinformatic Applications on the Grid"],"prefix":"10.1007","author":[{"given":"Fr\u00e9d\u00e9ric","family":"Desprez","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Antoine","family":"Vernois","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Christophe","family":"Blanchet","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"27_CR1","unstructured":"EBI,\n                    \n                      http:\/\/www.ebi.ac.uk"},{"key":"27_CR2","unstructured":"Inst. de Biologie et Chime des Prot\u00e9ines, \n                    \n                      http:\/\/www.ibcp.fr"},{"key":"27_CR3","unstructured":"NCBI, \n                    \n                      http:\/\/www.ncbi.nlm.nih.gov"},{"key":"27_CR4","unstructured":"NPS@, \n                    \n                      http:\/\/npsa-pbil.ibcp.fr"},{"key":"27_CR5","unstructured":"SIB, \n                    \n                      http:\/\/www.isb-sib.ch\/"},{"key":"27_CR6","unstructured":"The European DataGrid Project, \n                    \n                      http:\/\/www.eu-datagrid.org"},{"key":"27_CR7","doi-asserted-by":"publisher","first-page":"76","DOI":"10.1016\/j.cbpa.2003.12.004","volume":"8","author":"R. Apweiler","year":"2004","unstructured":"Apweiler, R., Bairoch, A., Wu, C.H.: Protein sequence databases. Current Opinion in Chem. Bio.\u00a08, 76\u201380 (2004)","journal-title":"Current Opinion in Chem. Bio."},{"key":"27_CR8","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"46","DOI":"10.1007\/3-540-36133-2_5","volume-title":"Grid Computing - GRID 2002","author":"W. Bell","year":"2002","unstructured":"Bell, W., Cameron, D., Capozza, L., Millar, A., Stockinger, K., Zini, F.: Simulation of Dynamic Grid Replication Strategies in OptorSim. In: Parashar, M. (ed.) GRID 2002. LNCS, vol.\u00a02536, pp. 46\u201357. Springer, Heidelberg (2002)"},{"key":"27_CR9","doi-asserted-by":"crossref","unstructured":"Bell, W., Cameron, D., Capozza, L., Millar, A., Stockinger, K., Zini, F.: OptorSim - A Grid Simulator for Studying Dynamic Data Replication Strategies. International Journal of High Performance Computing Applications\u00a017(4) (2003)","DOI":"10.1177\/10943420030174005"},{"key":"27_CR10","unstructured":"Berkelaar, M.: LP SOLVE, \n                    \n                      http:\/\/www.cs.sunysb.edu\/~algorith\/implement\/lpsolve\/implement.shtml"},{"volume-title":"Grid Computing: Making the Global Infrastructure a Reality","year":"2003","key":"27_CR11","unstructured":"Berman, F., Fox, G., Hey, A. (eds.): Grid Computing: Making the Global Infrastructure a Reality. Wiley, Chichester (2003)"},{"key":"27_CR12","doi-asserted-by":"publisher","first-page":"126","DOI":"10.1093\/nar\/29.1.126","volume":"29","author":"A. Bernal","year":"2001","unstructured":"Bernal, A., Ear, U., Kyrpides, N.: Genomes OnLine Database (GOLD): A Monitor of Genome Projects World-Wide. NAR\u00a029, 126\u2013127 (2001)","journal-title":"NAR"},{"key":"27_CR13","doi-asserted-by":"publisher","first-page":"365","DOI":"10.1093\/nar\/gkg095","volume":"31","author":"B. Boeckmann","year":"2003","unstructured":"Boeckmann, B., Bairoch, A., Apweiler, R., Blatter, M.-C., Estreicher, A., Gasteiger, E., Martin, M., Michoud, K., O\u2019Donovan, C., Phan, I., Pilbout, S., Schneider, M.: The SWISS-PROT Protein Knowledgebase and its Supplement TrEMBL in 2003. Nucleic Acids Res.\u00a031, 365\u2013370 (2003)","journal-title":"Nucleic Acids Res."},{"key":"27_CR14","first-page":"53","volume-title":"Proceedings 2nd International Conference on Intelligent Systems for Molecular Biology","author":"P. Bucher","year":"1994","unstructured":"Bucher, P., Bairoch, A.: A Generalized Profile Syntax for Biomolecular Sequences Motifs and Its Function in Automatic Sequence Interpretation. In: Proceedings 2nd International Conference on Intelligent Systems for Molecular Biology, vol.\u00a02, pp. 53\u201361. AAAI Press, Menlo Park (1994)"},{"issue":"2","key":"27_CR15","doi-asserted-by":"publisher","first-page":"263","DOI":"10.1145\/508352.508355","volume":"34","author":"V. Cardellini","year":"2002","unstructured":"Cardellini, V., Casalicchio, E., Colajanni, M., Su, P.: The State of the Art in Locally Distributed Web-Server Systems. ACM Computing Surveys\u00a034(2), 263\u2013311 (2002)","journal-title":"ACM Computing Surveys"},{"key":"27_CR16","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"375","DOI":"10.1007\/978-3-540-30474-6_41","volume-title":"High Performance Computing - HiPC 2004","author":"A. Chakrabarti","year":"2004","unstructured":"Chakrabarti, A., Dheepak, R., Sengupta, S.: Integration of Scheduling and Replication in Data Grids. In: Boug\u00e9, L., Prasanna, V.K. (eds.) HiPC 2004. LNCS, vol.\u00a03296, pp. 375\u2013385. Springer, Heidelberg (2004)"},{"key":"27_CR17","doi-asserted-by":"publisher","first-page":"187","DOI":"10.1006\/jnca.2000.0110","volume":"23","author":"A. Chervenak","year":"2001","unstructured":"Chervenak, A., Foster, I., Kesselman, C., Salisbury, C., Tuecke, S.: The Data Grid: Towards an Architecture for the Distributed Management and Analysis of Large Scientific Datasets. J. of Netw. and Comp. Appl.\u00a023, 187\u2013200 (2001)","journal-title":"J. of Netw. and Comp. Appl."},{"issue":"3","key":"27_CR18","first-page":"147","volume":"25","author":"C. Combet","year":"2000","unstructured":"Combet, C., Blanchet, C., Gourgeon, C., Del\u00e9age, G.: Nps@: Network protein sequence analysis. TIBS\u00a025(3):[291] 147\u2013150 (2000)","journal-title":"TIBS"},{"key":"27_CR19","volume-title":"4th International Workshop on Grid Computing (Grid 2003)","author":"R.C.-S.D.G. Cameron","year":"2003","unstructured":"Cameron, R.C.-S.D.G., Millar, A., Nicholson, C., Stockinger, K., Zini, F.: Evaluating Scheduling and Replica Optimisation Strategies in OptorSim. In: 4th International Workshop on Grid Computing (Grid 2003), November 2003, IEEE Computer Society Press, Los Alamitos (2003)"},{"key":"27_CR20","unstructured":"DIET, \n                    \n                      http:\/\/graal.ens-lyon.fr\/DIET\/"},{"volume-title":"The Grid 2: Blueprint for a New Computing Infrastructure","year":"2004","key":"27_CR21","unstructured":"Foster, I., Kesselman, C. (eds.): The Grid 2: Blueprint for a New Computing Infrastructure. Morgan Kaufmann, San Francisco (2004)"},{"key":"27_CR22","unstructured":"GriPP, \n                    \n                      http:\/\/gripps.ibcp.fr"},{"key":"27_CR23","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"77","DOI":"10.1007\/3-540-44444-0_8","volume-title":"Grid Computing - GRID 2000","author":"W. Hoscheck","year":"2000","unstructured":"Hoscheck, W., Jaen-Martinez, J., Samar, A., Stockinger, H., Stockinger, K.: Data Management in an International Data Grid Project. In: Buyya, R., Baker, M. (eds.) GRID 2000. LNCS, vol.\u00a01971, pp. 77\u201390. Springer, Heidelberg (2000)"},{"issue":"9-10","key":"27_CR24","doi-asserted-by":"crossref","first-page":"1093","DOI":"10.1016\/j.parco.2004.07.013","volume":"30","author":"N. Jacq","year":"2004","unstructured":"Jacq, N., Blanchet, C., Combet, C., Cornillot, E., Duret, L., Kurata, K., Nakamura, H., Sil-vestre, T., Breton, V.: Grid as a Bioinformatic Tool. Parallel Comp. Special issue: High-performance parallel bio-comp.\u00a030(9-10), 1093\u20131107 (2004)","journal-title":"Parallel Comp.. Special issue: High-performance parallel bio-comp."},{"key":"27_CR25","doi-asserted-by":"crossref","unstructured":"Kosar, T., Livny, M.: Stork: Making Data Placement a First Class Citizen in the Grid. In: Proceedings of 24th IEEE Int. Conference on Distributed Computing Systems (ICDCS 2004) (March 2004)","DOI":"10.1109\/ICDCS.2004.1281599"},{"key":"27_CR26","doi-asserted-by":"publisher","first-page":"111","DOI":"10.1007\/BF03040950","volume":"22","author":"A. Krishnan","year":"2004","unstructured":"Krishnan, A.: A Survey of Life Sciences Applications on the Grid. New Generation Computing\u00a022, 111\u2013126 (2004)","journal-title":"New Generation Computing"},{"key":"27_CR27","first-page":"385","volume-title":"The Open Grid Services Architecture for Data Grids","author":"P. Kunszt","year":"2003","unstructured":"Kunszt, P., Guy, L.: Grid Computing: Making the Global Infrastructure a Reality. In: The Open Grid Services Architecture for Data Grids, pp. 385\u2013435. Wiley, Chichester (2003)"},{"key":"27_CR28","doi-asserted-by":"publisher","first-page":"378","DOI":"10.1109\/ICAPP.2002.1173605","volume-title":"Proc. 5th International Conference on Algorithms and Architecture for Parallel Processing, ICA3PP 2002","author":"H. Lamehamedi","year":"2002","unstructured":"Lamehamedi, H., Szymanski, B., Shentu, Z., Deelman, E.: Data Replication Strategies in Grid Environments. In: Proc. 5th International Conference on Algorithms and Architecture for Parallel Processing, ICA3PP 2002, October 2002, pp. 378\u2013383. IEEE Computer Science Press, Los Alamitos (2002)"},{"key":"27_CR29","doi-asserted-by":"publisher","first-page":"3393","DOI":"10.1093\/nar\/gkg530","volume":"31","author":"G. Perriere","year":"2003","unstructured":"Perriere, G., Combet, C., Penel, S., Blanchet, C., Thioulouse, J., Geourjon, C., Grassot, J., Charavay, C., Gouy, M., Duret, L., Deleage, G.: Integrated Databanks Access and Sequence\/Structure Analysis Services at the PBIL. Nucleic Acids Res.\u00a031, 3393\u20133399 (2003)","journal-title":"Nucleic Acids Res."},{"issue":"4","key":"27_CR30","doi-asserted-by":"publisher","first-page":"374","DOI":"10.1145\/954339.954341","volume":"35","author":"S. Podlipding","year":"2003","unstructured":"Podlipding, S., B\u00f6sz\u00f6rmenyi, L.: A Survey ofWeb Cache Replacement Strategies. ACM Computing Surveys\u00a035(4), 374\u2013398 (2003)","journal-title":"ACM Computing Surveys"},{"key":"27_CR31","unstructured":"Qin, X., Jiang, H.: Data Grid: Supporting Data-Intensive Applications in Wide- Area Networks. Technical Report TR-03-05-01, Univ. of Nebraska-Lincoln (May 2003)"},{"key":"27_CR32","unstructured":"Ranganathan, K., Foster, I.: Decoupling Computation and Data Scheduling in Distributed Data Intensive Applications. In: Proc. of the 11th Int. Symp. for High Performance Distributed Computing (HPDC-11) (July 2002)"},{"issue":"1","key":"27_CR33","doi-asserted-by":"publisher","first-page":"53","DOI":"10.1023\/A:1024035627870","volume":"1","author":"K. Ranganathan","year":"2003","unstructured":"Ranganathan, K., Foster, I.: Simulation Studies of Computation and Data Scheduling Algorithms for Data Grids. Journal of Grid Computing\u00a01(1), 53\u201362 (2003)","journal-title":"Journal of Grid Computing"},{"key":"27_CR34","doi-asserted-by":"publisher","first-page":"345","DOI":"10.1093\/nar\/gkg040","volume":"31","author":"C. Wu","year":"2003","unstructured":"Wu, C., Yeh, L., Huang, H., Arminski, L., Castro-Alvear, J., Chen, Y., Hu, Z., Kourtesis, P., Ledley, R., Suzek, B.: The Protein Information Resource. Nucleic Acids Res.\u00a031, 345\u2013347 (2003)","journal-title":"Nucleic Acids Res."},{"key":"27_CR35","doi-asserted-by":"crossref","unstructured":"Xu, C., Jin, H., Srimani, P.: Special Issue on Scalable Web Services and Architecture. Journal on Parallel and Distributed Computing\u00a063 (2003)","DOI":"10.1016\/S0743-7315(03)00093-5"}],"container-title":["Lecture Notes in Computer Science","Biological and Medical Data Analysis"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/11573067_27","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,19]],"date-time":"2019-05-19T18:51:55Z","timestamp":1558291915000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/11573067_27"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2005]]},"ISBN":["9783540296744","9783540316589"],"references-count":35,"URL":"https:\/\/doi.org\/10.1007\/11573067_27","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2005]]}}}