{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,11]],"date-time":"2026-03-11T23:02:35Z","timestamp":1773270155122,"version":"3.50.1"},"publisher-location":"Berlin, Heidelberg","reference-count":13,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"value":"9783540327554","type":"print"},{"value":"9783540327561","type":"electronic"}],"license":[{"start":{"date-parts":[[2006,1,1]],"date-time":"2006-01-01T00:00:00Z","timestamp":1136073600000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006]]},"DOI":"10.1007\/11682462_2","type":"book-chapter","created":{"date-parts":[[2006,2,17]],"date-time":"2006-02-17T11:50:30Z","timestamp":1140177030000},"page":"8-10","source":"Crossref","is-referenced-by-count":3,"title":["RNA Molecules: Glimpses Through an Algorithmic Lens"],"prefix":"10.1007","author":[{"given":"Anne","family":"Condon","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"2_CR1","doi-asserted-by":"crossref","unstructured":"Alkan, C., Karako\u00e7, E., Nadeau, J., Sahinalp, S.C., Zhang, K.: RNA-RNA interaction prediction and antisense RNA target search. In: Proc. Ninth Annual Intl. Conf. on Research in Computational Molecular Biology (RECOMB), pp. 152\u2013171 (2005)","DOI":"10.1007\/11415770_12"},{"issue":"3","key":"2_CR2","doi-asserted-by":"publisher","first-page":"607","DOI":"10.1016\/j.jmb.2003.12.041","volume":"336","author":"M. Andronescu","year":"2004","unstructured":"Andronescu, M., Fejes, A.P., Hutter, F., Hoos, H.H., Condon, A.: A new algorithm for RNA secondary structure design. J. Mol. Biol.\u00a0336(3), 607\u2013624 (2004)","journal-title":"J. Mol. Biol."},{"issue":"1","key":"2_CR3","doi-asserted-by":"publisher","first-page":"35","DOI":"10.1016\/j.tcs.2004.03.042","volume":"320","author":"A. Condon","year":"2004","unstructured":"Condon, A., Davy, B., Rastegari, B., Tarrant, F., Zhao, S.: Classifying RNA pseudoknotted structures. Theoretical Computer Science\u00a0320(1), 35\u201350 (2004)","journal-title":"Theoretical Computer Science"},{"issue":"4","key":"2_CR4","doi-asserted-by":"publisher","first-page":"1392","DOI":"10.1093\/nar\/gkh291","volume":"32","author":"R.M. Dirks","year":"2004","unstructured":"Dirks, R.M., Lin, M., Winfree, E., Pierce, N.A.: Paradigms for computational nucleic acid design. Nucleic Acids Res.\u00a032(4), 1392\u20131403 (2004)","journal-title":"Nucleic Acids Res."},{"issue":"13","key":"2_CR5","doi-asserted-by":"publisher","first-page":"1664","DOI":"10.1002\/jcc.10296","volume":"24","author":"R.M. Dirks","year":"2004","unstructured":"Dirks, R.M., Pierce, N.A.: A partition function algorithm for nucleic acid secondary structure including pseudoknots. J. Comput. Chem.\u00a024(13), 1664\u20131677 (2004)","journal-title":"J. Comput. Chem."},{"key":"2_CR6","doi-asserted-by":"publisher","first-page":"3409","DOI":"10.1089\/106652700750050862","volume":"7","author":"R.B. Lyngs\u00f8","year":"2000","unstructured":"Lyngs\u00f8, R.B., Pedersen, C.N.S.: Pseudoknot prediction in energy based models. J. Comput. Biol.\u00a07, 3409\u20133427 (2000)","journal-title":"J. Comput. Biol."},{"key":"2_CR7","doi-asserted-by":"publisher","first-page":"911","DOI":"10.1006\/jmbi.1999.2700","volume":"288","author":"D.H. Mathews","year":"1999","unstructured":"Mathews, D.H., Sabina, J., Zuker, M., Turner, D.H.: Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol.\u00a0288, 911\u2013940 (1999)","journal-title":"J. Mol. Biol."},{"issue":"11","key":"2_CR8","first-page":"986","volume":"2","author":"J.S. Mattick","year":"2001","unstructured":"Mattick, J.S.: Non-coding RNAs: the architects of eukaryotic complexity. EMBO (European Molecular Biology Organization) Reports\u00a02(11), 986\u2013991 (2001)","journal-title":"EMBO (European Molecular Biology Organization) Reports"},{"key":"2_CR9","doi-asserted-by":"crossref","unstructured":"Meyer, I.M., Miklos, I.: Co-transcriptional folding is encoded within RNA genes. BMC Molecular Biology\u00a05(10) (2004)","DOI":"10.1186\/1471-2199-5-10"},{"key":"2_CR10","doi-asserted-by":"publisher","first-page":"2053","DOI":"10.1006\/jmbi.1998.2436","volume":"225","author":"E. Rivas","year":"1999","unstructured":"Rivas, E., Eddys, S.R.: A dynamic programming algorithm for RNA structure prediction including pseudoknots. J. Mol. Biol.\u00a0225, 2053\u20132068 (1999)","journal-title":"J. Mol. Biol."},{"key":"2_CR11","doi-asserted-by":"publisher","first-page":"387","DOI":"10.1038\/35053176","volume":"409","author":"J.W. Szostak","year":"2001","unstructured":"Szostak, J.W., Bartel, D.P., Luisi, L.: Synthesizing life. Nature\u00a0409, 387\u2013389 (2001)","journal-title":"Nature"},{"issue":"6","key":"2_CR12","doi-asserted-by":"publisher","first-page":"862","DOI":"10.1089\/cmb.2005.12.862","volume":"12","author":"X. Tang","year":"2005","unstructured":"Tang, X., Kirkpatrick, B., Thomas, S., Song, G., Amato, N.M.: Using Motion Planning to Study RNA Folding Kinetics. J. Comput. Biol.\u00a012(6), 862\u2013881 (2005)","journal-title":"J. Comput. Biol."},{"key":"2_CR13","doi-asserted-by":"publisher","first-page":"605","DOI":"10.1093\/nar\/gki447","volume":"33","author":"A. Xayaphoummine","year":"2005","unstructured":"Xayaphoummine, A., Bucher, T., Isambert, H.: Kinefold web server for RNA\/DNA folding path and structure prediction including pseudoknots and knots. Nucleic Acid Res.\u00a033, 605\u2013610 (2005)","journal-title":"Nucleic Acid Res."}],"container-title":["Lecture Notes in Computer Science","LATIN 2006: Theoretical Informatics"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/11682462_2","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,4,17]],"date-time":"2019-04-17T00:18:34Z","timestamp":1555460314000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/11682462_2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006]]},"ISBN":["9783540327554","9783540327561"],"references-count":13,"URL":"https:\/\/doi.org\/10.1007\/11682462_2","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"value":"0302-9743","type":"print"},{"value":"1611-3349","type":"electronic"}],"subject":[],"published":{"date-parts":[[2006]]}}}