{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,24]],"date-time":"2025-10-24T07:51:53Z","timestamp":1761292313593,"version":"3.32.0"},"publisher-location":"Berlin, Heidelberg","reference-count":24,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540328094"},{"type":"electronic","value":"9783540328100"}],"license":[{"start":{"date-parts":[[2006,1,1]],"date-time":"2006-01-01T00:00:00Z","timestamp":1136073600000},"content-version":"unspecified","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006]]},"DOI":"10.1007\/11683568_12","type":"book-chapter","created":{"date-parts":[[2006,2,25]],"date-time":"2006-02-25T05:42:52Z","timestamp":1140846172000},"page":"139-145","source":"Crossref","is-referenced-by-count":2,"title":["GetItFull \u2013 A Tool for Downloading and Pre-processing Full-Text Journal Articles"],"prefix":"10.1007","author":[{"given":"Jeyakumar","family":"Natarajan","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Cliff","family":"Haines","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Brian","family":"Berglund","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Catherine","family":"DeSesa","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Catherine J.","family":"Hack","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Werner","family":"Dubitzky","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Eric G.","family":"Bremer","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"12_CR1","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1080\/07388550590935571","volume":"25","author":"J. Natarajan","year":"2005","unstructured":"Natarajan, J., Berrar, D., Hack, C.J., Dubitzky, W.: Knowledge Discovery in Biology and Biotechnology Texts: A Review of Techniques, Evaluation Strategies, and Applications. Critical Reviews in Biotechnology\u00a025, 31\u201352 (2005)","journal-title":"Critical Reviews in Biotechnology"},{"key":"12_CR2","doi-asserted-by":"crossref","unstructured":"Hearst Marti, A.: Untangling text data mining. In: Proc. of ACL, 37 (1999)","DOI":"10.3115\/1034678.1034679"},{"key":"12_CR3","volume-title":"Modern information retrieval","author":"R. Baeza-Yates","year":"1999","unstructured":"Baeza-Yates, R., Ribeiro-Nato, B.: Modern information retrieval. Addison-Wesley, Harlow, UK (1999)"},{"key":"12_CR4","unstructured":"Ng, S.-K., Wong, M.: Towards routine automatic pathway discovery from on-line scientific text abstracts. In: Proceedings of the workshop on Genome Informatics, vol.\u00a010, pp. 104\u2013112 (1999)"},{"key":"12_CR5","doi-asserted-by":"crossref","unstructured":"Wong, L.: A protein interaction extraction system. In: Pacific Symposium on Biocomputing, vol.\u00a06, pp. 520\u2013531 (2001)","DOI":"10.1142\/9789814447362_0050"},{"key":"12_CR6","doi-asserted-by":"crossref","unstructured":"Park, J.C., Kim, H.S., Kim, J.J.: Bi-directional incremental parsing for automatic pathway identification with combinatory categorical grammar. In: Pacific Symposium on Biocomputing, vol.\u00a06, pp. 396\u2013407 (2001)","DOI":"10.1142\/9789814447362_0039"},{"key":"12_CR7","doi-asserted-by":"crossref","unstructured":"Yakushiji, A., Tateisi, Y., Miyao, Y., Tsujii, J.: Event extraction from biomedical papers using a full parser. In: Pacific Symposium on Biocomputing, vol.\u00a06, pp. 408\u2013419 (2001)","DOI":"10.1142\/9789814447362_0040"},{"key":"12_CR8","doi-asserted-by":"publisher","first-page":"74","DOI":"10.1093\/bioinformatics\/17.suppl_1.S74","volume":"1","author":"C. Friedman","year":"2001","unstructured":"Friedman, C., Kra, P., Yu, H., Krauthammer, M., Rzhetsky, A.: GENIES: A natural language processing system for extraction of molecular pathways from journal article. Bioinformatics Suppl.\u00a01, 74\u201382 (2001)","journal-title":"Bioinformatics Suppl."},{"key":"12_CR9","unstructured":"Sekimizu, T., Park, H.S., Tsujii, J.: Identifying the interaction between genes and gene products based on frequently seen verbs in MEDLINE abstracts. In: Proceedings of the workshop on Genome Informatics, pp. 62\u201371 (1998)"},{"key":"12_CR10","doi-asserted-by":"crossref","unstructured":"Rindflesch, T.C., Tanabe, L., Weinstein, J.N., Hunter, L.: EDGAR: Extraction of drugs, genes, and relations from the biomedical literature. In: Pacific Symposium On Biocomputing, vol.\u00a05, pp. 517\u2013528 (2000)","DOI":"10.1142\/9789814447331_0049"},{"key":"12_CR11","unstructured":"Craven, M., Kumlien, J.: Constructing biological knowledge base by extracting information from text sources. In: Proceedings of the 7th International Conference on Intelligent Systems for Molecular Biology, pp. 76\u201377 (1999)"},{"key":"12_CR12","doi-asserted-by":"crossref","unstructured":"Stapley, B.J., Kelley, L.A., Strenberg, M.J.E.: Predicting the sub-cellular location of proteins from text using support vector machines. In: Pacific Symposium on Biocomputing, vol.\u00a07, pp. 374\u2013385 (2002)","DOI":"10.1142\/9789812799623_0035"},{"key":"12_CR13","doi-asserted-by":"crossref","unstructured":"Rindflesch, T.C., Rayan, J.V., Hunter, L.: Extracting molecular binding relationships from biomedical text. In: Proc. App. Nat. Lan. Proc. and Ass. Comp. Ling., pp. 188\u2013195 (2000)","DOI":"10.3115\/974147.974173"},{"key":"12_CR14","doi-asserted-by":"crossref","unstructured":"Shah, P.K., Perz_Iratxeta, C., Bork, P., Andrade, M.A.: Information Extraction from Full-text Scientific Articles, Where are the key words? BMC Bioinformatics\u00a04(20) (2003)","DOI":"10.1186\/1471-2105-4-20"},{"key":"12_CR15","unstructured":"Yu, H., Hatzvisaailoulou, V., Friedman, C., Rzhetsky, A., Wilbur, W.J.: Automatic Extraction of Gene and Protein Synonyms from Medline and Journal Articles. In: Proceedings of AMIA Symposium, pp. 919\u2013923 (2003)"},{"key":"12_CR16","doi-asserted-by":"publisher","first-page":"74","DOI":"10.1093\/bioinformatics\/17.suppl_1.S74","volume":"17","author":"C. Frideman","year":"2001","unstructured":"Frideman, C., Kra, P., Yu, H., Krauthammer, M., Rzhetsky, A.: Geneis: A Natural language processing system. Bioinformatics\u00a017, 74\u201382 (2001)","journal-title":"Bioinformatics"},{"key":"12_CR17","doi-asserted-by":"publisher","first-page":"2597","DOI":"10.1093\/bioinformatics\/bth291","volume":"20","author":"M.J. Schuemie","year":"2004","unstructured":"Schuemie, M.J., Weeber, M., Schijvenaars, B.J.A., van Mulligen, E.M., van der Eijk, C.C., Jelier, R., Mons, B., Kors, J.A.: Distribution of Information in Biomedical Abstracts and Full-text Publications. Bioinformatics\u00a020, 2597\u20132604 (2004)","journal-title":"Bioinformatics"},{"key":"12_CR18","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"84","DOI":"10.1007\/978-3-540-30478-4_8","volume-title":"Knowledge Exploration in Life Science Informatics","author":"E.G. Bremer","year":"2004","unstructured":"Bremer, E.G., Natarajan, J., Zhang, Y., DeSesa, C., Hack, C.J., Dubitzky, W.: Text mining of full text articles and creation of a knowledge base for analysis of microarray data. In: L\u00f3pez, J.A., Benfenati, E., Dubitzky, W. (eds.) KELSI 2004. LNCS, vol.\u00a03303, pp. 84\u201395. Springer, Heidelberg (2004)"},{"key":"12_CR19","unstructured":"Microsoft Internet Transfer control help at http:\/\/support.microsoft.com\/"},{"key":"12_CR20","unstructured":"Entrez-gene, a database of genes at http:\/\/www.ncbi.nih.gov\/entrez\/"},{"key":"12_CR21","series-title":"Lecture Notes in Bioinformatics","doi-asserted-by":"publisher","first-page":"101","DOI":"10.1007\/11573067_11","volume-title":"Biological and Medical Data Analysis","author":"J. Natarajan","year":"2005","unstructured":"Natarajan, J., Mulay, N., DeSesa, C., Hack, C.J., Dubitzky, W., Bremer, E.G.: A grid infrastructure for text mining of full text articles and creation of a knowledge base of gene relations. In: Oliveira, J.L., Maojo, V., Mart\u00edn-S\u00e1nchez, F., Pereira, A.S. (eds.) ISBMDA 2005. LNCS (LNBI), vol.\u00a03745, pp. 101\u2013108. Springer, Heidelberg (2005)"},{"key":"12_CR22","unstructured":"Text REtrieval Conference (TREC) home page at http:\/\/trec.nist.gov\/"},{"key":"12_CR23","unstructured":"Cohen, K.B., Tanabe, L., Kinoshita, S., Hunter, L.: A resource for constructing customized test suites for molecular biology entity identification system. In: Linking Biological Literature, Ontologies and Databases (Biolink 2004), pp. 1\u20138 (2004)"},{"key":"12_CR24","doi-asserted-by":"crossref","unstructured":"M\u00fcller, H.M., Kenny, E.E., Sternberg, P.W.: Textpresso: An Ontology-Based Information Retrieval and Extraction System for Biological Literature. PLOS Biology\u00a02(11) (2004)","DOI":"10.1371\/journal.pbio.0020309"}],"container-title":["Lecture Notes in Computer Science","Knowledge Discovery in Life Science Literature"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/11683568_12","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,1,7]],"date-time":"2025-01-07T21:39:59Z","timestamp":1736285999000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/11683568_12"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006]]},"ISBN":["9783540328094","9783540328100"],"references-count":24,"URL":"https:\/\/doi.org\/10.1007\/11683568_12","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2006]]}}}