{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,1,8]],"date-time":"2025-01-08T23:10:25Z","timestamp":1736377825277,"version":"3.32.0"},"publisher-location":"Berlin, Heidelberg","reference-count":17,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540343813"},{"type":"electronic","value":"9783540343820"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006]]},"DOI":"10.1007\/11758525_116","type":"book-chapter","created":{"date-parts":[[2006,5,11]],"date-time":"2006-05-11T15:03:32Z","timestamp":1147359812000},"page":"871-878","source":"Crossref","is-referenced-by-count":2,"title":["Cross-Ontological Analytics: Combining Associative and Hierarchical Relations in the Gene Ontologies to Assess Gene Product Similarity"],"prefix":"10.1007","author":[{"given":"C.","family":"Posse","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"A.","family":"Sanfilippo","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"B.","family":"Gopalan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"R.","family":"Riensche","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"N.","family":"Beagley","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"B.","family":"Baddeley","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"116_CR1","doi-asserted-by":"publisher","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","volume":"25","author":"S.F. Altschul","year":"1997","unstructured":"Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Anang, Z., Miller, W., Lipman, D.J.: Gapped BLAST and PSI-BLST: a new generation of protein database search programs. Nucl. Acids Res.\u00a025, 3389\u20133402 (1997)","journal-title":"Nucl. Acids Res."},{"unstructured":"Azuaje, F., Wang, H., Bodenreider, O.: Ontology-driven similarity approaches to supporting gene functional assessment. In: Proceedings of the ISMB 2005 SIG meeting on Bio-ontologies, pp. 9\u201310 (2005)","key":"116_CR2"},{"unstructured":"Bodenreider, O., Aubry, M., Burgun, A.: Non-lexical approaches to identifying associative relations in the gene ontology. In: Proceedings of Pacific Symposium on Biocomputing, pp. 104\u2013115 (2005)","key":"116_CR3"},{"unstructured":"Budanitsky, A.: Lexical semantic relatedness and its application in natural language processing. Technical report CSRG-390, Department of Computer Science, University of Toronto (1999)","key":"116_CR4"},{"unstructured":"Couto, F.M., Silva, M.J., Coutinho, P.: Implementation of a functional semantic similarity measure between gene-products. Technical Report, Department of Informatics, University of Lisbon (2003), http:\/\/www.di.fc.ul.pt\/tech-reports\/03-29.pdf","key":"116_CR5"},{"unstructured":"Jiang, J., Conrath, D.: Semantic similarity based on corpus statistics and lexical taxonomy. In: Proceedings of International Conference on Research in Computational Linguistics, Taiwan (1997)","key":"116_CR6"},{"key":"116_CR7","doi-asserted-by":"crossref","first-page":"177","DOI":"10.1093\/biomet\/36.1-2.177","volume":"36","author":"M.G. Kendall","year":"1949","unstructured":"Kendall, M.G.: Rank and product-moment correlation. Biometrika\u00a036, 177\u2013193 (1949)","journal-title":"Biometrika"},{"unstructured":"Lin, D.: An information-theoretic definition of similarity. In: Proceedings of the 15th International Conference on Machine Learning, Madison, WI (1998)","key":"116_CR8"},{"issue":"10","key":"116_CR9","doi-asserted-by":"publisher","first-page":"1275","DOI":"10.1093\/bioinformatics\/btg153","volume":"19","author":"P.W. Lord","year":"2002","unstructured":"Lord, P.W., Stevens, R.D., Brass, A., Goble, C.A.: Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics\u00a019(10), 1275\u20131283 (2002)","journal-title":"Bioinformatics"},{"doi-asserted-by":"crossref","unstructured":"Lord, P.W., Stevens, R.D., Brass, A., Goble, C.A.: Semantic similarity measures as tools for exploring the Gene Ontology. In: Proceedings of Pacific Symposium on Biocomputing, pp. 601\u2013612 (2003)","key":"116_CR10","DOI":"10.1142\/9789812776303_0056"},{"doi-asserted-by":"crossref","unstructured":"Oehmen, C.S., Nieplocha, J.N.: ScalaBLAST: A scalable implementation of BLAST for high performance data-intensive bioinformatics analysis. IEEE Transactions on Parallel and Distributed Systems (2006) (in press)","key":"116_CR11","DOI":"10.1109\/TPDS.2006.112"},{"key":"116_CR12","doi-asserted-by":"publisher","first-page":"2444","DOI":"10.1073\/pnas.85.8.2444","volume":"85","author":"W.R. Pearson","year":"1988","unstructured":"Pearson, W.R., Lipman, D.J.: Improved tools for biological sequence analysis. Proceedings of the National Academy of Sciences\u00a085, 2444\u20132448 (1988)","journal-title":"Proceedings of the National Academy of Sciences"},{"doi-asserted-by":"crossref","unstructured":"Popescu, M., Keller, J.M., Mitchell, J.A.: Gene ontology automatic annotation using a domain based gene product similarity measure. In: Proceedings of 14th IEEE International Conference on Fuzzy Systems, Reno, Nevada, May 21-25, pp. 108\u2013111 (2005)","key":"116_CR13","DOI":"10.1109\/FUZZY.2005.1452377"},{"issue":"15","key":"116_CR14","doi-asserted-by":"publisher","first-page":"4553","DOI":"10.1093\/nar\/gkg636","volume":"31","author":"S. Raychaudhuri","year":"2003","unstructured":"Raychaudhuri, S., Chang, J.T., Imam, F., Altman, R.B.: The computational analysis of scientific literature to define and recognize gene expression clusters. Nucleic Acids Research\u00a031(15), 4553\u20134560 (2003)","journal-title":"Nucleic Acids Research"},{"unstructured":"Resnik, P.: Using information content to evaluate semantic similarity. In: Proceedings of the 14th International Joint Conference on Artificial Intelligence, Montreal, pp. 448\u2013453 (1995)","key":"116_CR15"},{"issue":"11","key":"116_CR16","doi-asserted-by":"crossref","first-page":"613","DOI":"10.1145\/361219.361220","volume":"18","author":"G. Salton","year":"1975","unstructured":"Salton, G., Wong, A., Yang, C.S.: A Vector space model for automatic indexing. CACM\u00a018(11), 613\u2013620 (1975)","journal-title":"CACM"},{"key":"116_CR17","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1016\/0022-2836(81)90087-5","volume":"147","author":"T. Smith","year":"1981","unstructured":"Smith, T., Waterman, M.S.: Identification of common molecular subsequences. J. Mol. Biol.\u00a0147, 195\u2013197 (1981)","journal-title":"J. Mol. Biol."}],"container-title":["Lecture Notes in Computer Science","Computational Science \u2013 ICCS 2006"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/11758525_116","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,1,8]],"date-time":"2025-01-08T22:37:48Z","timestamp":1736375868000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/11758525_116"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006]]},"ISBN":["9783540343813","9783540343820"],"references-count":17,"URL":"https:\/\/doi.org\/10.1007\/11758525_116","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2006]]}}}