{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,9]],"date-time":"2024-09-09T14:28:49Z","timestamp":1725892129277},"publisher-location":"Berlin, Heidelberg","reference-count":29,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540374466"},{"type":"electronic","value":"9783540374473"}],"license":[{"start":{"date-parts":[[2006,1,1]],"date-time":"2006-01-01T00:00:00Z","timestamp":1136073600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006]]},"DOI":"10.1007\/11818564_5","type":"book-chapter","created":{"date-parts":[[2006,9,29]],"date-time":"2006-09-29T04:01:53Z","timestamp":1159502513000},"page":"32-41","source":"Crossref","is-referenced-by-count":0,"title":["Comparative Gene Prediction Based on Gene Structure Conservation"],"prefix":"10.1007","author":[{"given":"Shu Ju","family":"Hsieh","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Chun Yuan","family":"Lin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ning Han","family":"Liu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Chuan Yi","family":"Tang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"5_CR1","doi-asserted-by":"publisher","first-page":"496","DOI":"10.1101\/gr.424203","volume":"13","author":"M. Alexandersson","year":"2003","unstructured":"Alexandersson, M., Cawley, S., Pachter, L.: SLAM: cross-organisms gene finding and alignment with a generalized pair hidden Markov model. Genome Res.\u00a013, 496\u2013502 (2003)","journal-title":"Genome Res."},{"key":"5_CR2","doi-asserted-by":"publisher","first-page":"142","DOI":"10.1101\/gr.1562804","volume":"14","author":"J.E. Allen","year":"2004","unstructured":"Allen, J.E., Pertea, M., Salzberg, S.L.: Computational gene prediction using multiple sources of evidence. Genome Res.\u00a014, 142\u2013148 (2004)","journal-title":"Genome Res."},{"key":"5_CR3","doi-asserted-by":"publisher","first-page":"3596","DOI":"10.1093\/bioinformatics\/bti609","volume":"21","author":"J.E. Allen","year":"2005","unstructured":"Allen, J.E., Salzberg, S.L.: JIGSAW: integration of multiple sources of evidence for gene prediction. Bioinformatics\u00a021, 3596\u20133606 (2005)","journal-title":"Bioinformatics"},{"key":"5_CR4","doi-asserted-by":"publisher","first-page":"950","DOI":"10.1101\/gr.10.7.950","volume":"10","author":"S. Batzoglou","year":"2000","unstructured":"Batzoglou, S., Pachter, L., Mesirovi, J.P., Berger, B., Lander, E.S.: Human and mouse gene structure: comparative analysis and application to exon prediction. Genome Res.\u00a010, 950\u2013958 (2000)","journal-title":"Genome Res."},{"key":"5_CR5","doi-asserted-by":"publisher","first-page":"126","DOI":"10.1093\/nar\/29.1.126","volume":"29","author":"A. Bernal","year":"2001","unstructured":"Bernal, A., Ear, U., Kyrpides, N.: Genomes OnLine Database (GOLD): a monitor of genome projects world-wide. Nucleic Acids Res.\u00a029, 126\u2013127 (2001)","journal-title":"Nucleic Acids Res."},{"key":"5_CR6","doi-asserted-by":"publisher","first-page":"988","DOI":"10.1101\/gr.1865504","volume":"14","author":"E. Birney","year":"2004","unstructured":"Birney, E., Clamp, M., Durbin, R.: GeneWise and Genomewise. Genome Res.\u00a014, 988\u2013995 (2004)","journal-title":"Genome Res."},{"key":"5_CR7","doi-asserted-by":"publisher","first-page":"57","DOI":"10.1093\/bioinformatics\/bti1040","volume":"21","author":"B. Brejova","year":"2005","unstructured":"Brejova, B., Brown, D.G., Li, M., Vinar, T.: ExonHunter: a comprehensive approach to gene finding. Bioinformatics\u00a021, 57\u201365 (2005)","journal-title":"Bioinformatics"},{"key":"5_CR8","doi-asserted-by":"publisher","first-page":"1157","DOI":"10.1093\/bioinformatics\/bth058","volume":"20","author":"V. Brendel","year":"2004","unstructured":"Brendel, V., Xing, L., Zhu, W.: Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus. Bioinformatics\u00a020, 1157\u20131169 (2004)","journal-title":"Bioinformatics"},{"key":"5_CR9","doi-asserted-by":"publisher","first-page":"264","DOI":"10.1016\/j.sbi.2004.05.007","volume":"14","author":"M.R. Brent","year":"2004","unstructured":"Brent, M.R., Buigo, R.: Recent advances in gene structure prediction. Curr. Opin. Struct. Biol.\u00a014, 264\u2013272 (2004)","journal-title":"Curr. Opin. Struct. Biol."},{"key":"5_CR10","doi-asserted-by":"publisher","first-page":"78","DOI":"10.1006\/jmbi.1997.0951","volume":"268","author":"C. Burge","year":"1997","unstructured":"Burge, C., Karlin, S.: Prediction of complete gene structures in human genomic DNA. J. Mol. Biol.\u00a0268, 78\u201394 (1997)","journal-title":"J. Mol. Biol."},{"key":"5_CR11","doi-asserted-by":"publisher","first-page":"353","DOI":"10.1006\/geno.1996.0298","volume":"34","author":"M. Burset","year":"1996","unstructured":"Burset, M., Guig\u00f3, R.: Evaluation of gene structure prediction programs. Genomics\u00a034, 353\u2013367 (1996)","journal-title":"Genomics"},{"key":"5_CR12","doi-asserted-by":"publisher","first-page":"471","DOI":"10.1093\/bioinformatics\/bti025","volume":"21","author":"T.M. Chen","year":"2005","unstructured":"Chen, T.M., Lu, C.C., Li, W.H.: Prediction of splice sites with dependency graphs and their expanded bayesian networks. Bioinformatics\u00a021, 471\u2013482 (2005)","journal-title":"Bioinformatics"},{"key":"5_CR13","doi-asserted-by":"publisher","first-page":"942","DOI":"10.1101\/gr.1858004","volume":"14","author":"V. Curwen","year":"2004","unstructured":"Curwen, V., Eyras, E., Andrews, T.D., Clarke, L., Mongin, E., Searle, S.M., Clamp, M.: The Ensembl automatic gene annotation system. Genome Res.\u00a014, 942\u2013950 (2004)","journal-title":"Genome Res."},{"key":"5_CR14","doi-asserted-by":"crossref","first-page":"967","DOI":"10.1101\/gr.8.9.967","volume":"8","author":"L. Florea","year":"1998","unstructured":"Florea, L., Hartzell, G., Zhang, Z., Rubin, G.M., Miller, W.: A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res.\u00a08, 967\u2013974 (1998)","journal-title":"Genome Res."},{"key":"5_CR15","doi-asserted-by":"publisher","first-page":"9061","DOI":"10.1073\/pnas.93.17.9061","volume":"93","author":"M.S. Gelfand","year":"1996","unstructured":"Gelfand, M.S., Mironov, A.A., Pevzner, P.A.: Gene recognition via spliced sequence alignment. Proc. Natl. Acad. Sci.\u00a093, 9061\u20139066 (1996)","journal-title":"Proc. Natl. Acad. Sci."},{"key":"5_CR16","unstructured":"Hsieh, S.J., Lin, C.Y., Chung, Y.S., Tang, C.Y.: Comparative exon prediction based on heuristic coding region alignment. In: Proceedings of the International Symposium on Parallel Architectures, Algorithms, and Networks, pp. 14\u201319 (2005)"},{"key":"5_CR17","doi-asserted-by":"publisher","first-page":"51","DOI":"10.1093\/nar\/gkg129","volume":"31","author":"D. Karolchik","year":"2003","unstructured":"Karolchik, D., Baertsch, R., Diekhans, M., Furey, T.S., Hinrichs, A., Lu, Y.T., Roskin, K.M., Schwartz, M., Sugnet, C.W., Thomas, D.J., et al.: The UCSC Genome Browser Database. Nucleic Acids Res.\u00a031, 51\u201354 (2003)","journal-title":"Nucleic Acids Res."},{"key":"5_CR18","doi-asserted-by":"publisher","first-page":"1115","DOI":"10.1101\/gr.10.8.1115","volume":"10","author":"W.J. Kent","year":"2000","unstructured":"Kent, W.J., Zahler, A.M.: Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment. Genome Res.\u00a010, 1115\u20131125 (2000)","journal-title":"Genome Res."},{"key":"5_CR19","doi-asserted-by":"crossref","first-page":"140","DOI":"10.1093\/bioinformatics\/17.suppl_1.S140","volume":"17","author":"I. Korf","year":"2001","unstructured":"Korf, I., Flicek, P., Duan, D., Brent, M.R.: Integrating genomic homology into gene structure prediction. Bioinformatics\u00a017, 140\u2013148 (2001)","journal-title":"Bioinformatics"},{"key":"5_CR20","doi-asserted-by":"publisher","first-page":"776","DOI":"10.1093\/nar\/gkh211","volume":"32","author":"I.M. Meyer","year":"2004","unstructured":"Meyer, I.M., Durbin, R.: Gene structure conservation aids similarity based gene prediction. Nucleic Acids Res.\u00a032, 776\u2013783 (2004)","journal-title":"Nucleic Acids Res."},{"key":"5_CR21","doi-asserted-by":"publisher","first-page":"1309","DOI":"10.1093\/bioinformatics\/18.10.1309","volume":"18","author":"I.M. Meyer","year":"2002","unstructured":"Meyer, I.M., Durbin, R.: Comparative ab initio prediction of gene structures using pair HMMs. Bioinformatics\u00a018, 1309\u20131318 (2002)","journal-title":"Bioinformatics"},{"key":"5_CR22","doi-asserted-by":"crossref","first-page":"520","DOI":"10.1038\/nature01262","volume":"420","author":"Mouse Genome Sequencing Consortium","year":"2002","unstructured":"Mouse Genome Sequencing Consortium. Initial sequencing and comparative analysis of the mouse genome. Nature\u00a0420, 520\u2013562 (2002)","journal-title":"Nature"},{"key":"5_CR23","doi-asserted-by":"publisher","first-page":"14","DOI":"10.1186\/1471-2105-5-14","volume":"5","author":"A. Nadershahi","year":"2004","unstructured":"Nadershahi, A., Fahrenkrug, S.C., Ellis, L.B.: Comparison of computational method for identifying translation initiation sites in EST data. BMC Bioinformatics\u00a05, 14 (2004)","journal-title":"BMC Bioinformatics"},{"key":"5_CR24","doi-asserted-by":"publisher","first-page":"1011","DOI":"10.1093\/bioinformatics\/17.11.1011","volume":"17","author":"P.S. Novichkov","year":"2001","unstructured":"Novichkov, P.S., Gelfand, M.S., Mironov, A.A.: Gene recognition in eukaryotic DNA by comparison of genomic sequences. Bioinformatics\u00a017, 1011\u20131018 (2001)","journal-title":"Bioinformatics"},{"key":"5_CR25","doi-asserted-by":"publisher","first-page":"108","DOI":"10.1101\/gr.871403","volume":"13","author":"G. Parra","year":"2003","unstructured":"Parra, G., Agarwal, P., Abril, J.F., Wiehe, T., Fickett, J.W., Guig\u00f3, R.: Comparative gene prediction in human and mouse. Genome Res.\u00a013, 108\u2013117 (2003)","journal-title":"Genome Res."},{"key":"5_CR26","unstructured":"Pedersen, A.G., Nielen, H.: Neural Network Prediction of Translation Initiation Sites in Eukaryotes: Perspectives for EST and Genome analysis. In: Proc. Int. Conf. Intell. Syst. Mol. Biol., vol.\u00a05, pp. 226\u2013233 (1997)"},{"key":"5_CR27","doi-asserted-by":"publisher","first-page":"501","DOI":"10.1093\/nar\/gki025","volume":"33","author":"K.D. Pruitt","year":"2005","unstructured":"Pruitt, K.D., Tatusova, T., Maglott, D.R.: NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res.\u00a033, 501\u2013504 (2005)","journal-title":"Nucleic Acids Res."},{"key":"5_CR28","doi-asserted-by":"crossref","first-page":"1952","DOI":"10.1101\/gr.195301","volume":"11","author":"S.J. Wheelan","year":"2001","unstructured":"Wheelan, S.J., Church, D.M., Ostell, J.M.: Spidey: a tool for mRNA-to-genomic alignments. Genome Res.\u00a011, 1952\u20131957 (2001)","journal-title":"Genome Res."},{"key":"5_CR29","doi-asserted-by":"publisher","first-page":"1859","DOI":"10.1093\/bioinformatics\/bti310","volume":"21","author":"T.D. Wu","year":"2005","unstructured":"Wu, T.D., Watanabe, C.K.: GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics\u00a021, 1859\u20131875 (2005)","journal-title":"Bioinformatics"}],"container-title":["Lecture Notes in Computer Science","Pattern Recognition in Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/11818564_5","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,19]],"date-time":"2019-05-19T13:12:48Z","timestamp":1558271568000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/11818564_5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006]]},"ISBN":["9783540374466","9783540374473"],"references-count":29,"URL":"https:\/\/doi.org\/10.1007\/11818564_5","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2006]]}}}