{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,4]],"date-time":"2024-09-04T18:01:14Z","timestamp":1725472874253},"publisher-location":"Berlin, Heidelberg","reference-count":30,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540457671"},{"type":"electronic","value":"9783540457688"}],"license":[{"start":{"date-parts":[[2006,1,1]],"date-time":"2006-01-01T00:00:00Z","timestamp":1136073600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006]]},"DOI":"10.1007\/11875741_23","type":"book-chapter","created":{"date-parts":[[2006,11,21]],"date-time":"2006-11-21T13:13:09Z","timestamp":1164114789000},"page":"236-246","source":"Crossref","is-referenced-by-count":0,"title":["Construction of Correlation Networks with Explicit Time-Slices Using Time-Lagged, Variable Interval Standard and Partial Correlation Coefficients"],"prefix":"10.1007","author":[{"given":"Wouter","family":"Meuleman","sequence":"first","affiliation":[]},{"given":"Monique C. M.","family":"Welten","sequence":"additional","affiliation":[]},{"given":"Fons J.","family":"Verbeek","sequence":"additional","affiliation":[]}],"member":"297","reference":[{"key":"23_CR1","unstructured":"Wu, X., Ye, Y., Subramanian, K.: Interactive analysis of gene interactions using graphical Gaussian model. In: ACM SIGKDD Workshop on Data Mining in Bioinformatics, vol.\u00a03, pp. 63\u201369 (2003)"},{"issue":"6","key":"23_CR2","doi-asserted-by":"publisher","first-page":"754","DOI":"10.1093\/bioinformatics\/bti062","volume":"21","author":"J. Schfer","year":"2005","unstructured":"Schfer, J., Strimmer, K.: An empirical Bayes approach to inferring large-scale gene association networks. Bioinformatics\u00a021(6), 754\u2013764 (2005)","journal-title":"Bioinformatics"},{"key":"23_CR3","doi-asserted-by":"publisher","first-page":"799","DOI":"10.1126\/science.1094068","volume":"303","author":"N. Friedman","year":"2004","unstructured":"Friedman, N.: Inferring cellular networks using probabilistic graphical models. Science\u00a0303, 799\u2013805 (2004)","journal-title":"Science"},{"issue":"3","key":"23_CR4","doi-asserted-by":"crossref","first-page":"267","DOI":"10.3233\/IDA-2002-6306","volume":"6","author":"P. Kellam","year":"2002","unstructured":"Kellam, P., Liu, X., Martin, N., Orengo, C., Swift, S., Tucker, A.: A framework for modelling virus gene expression data. Intelligent Data Analysis\u00a06(3), 267\u2013279 (2002)","journal-title":"Intelligent Data Analysis"},{"issue":"3","key":"23_CR5","doi-asserted-by":"publisher","first-page":"228","DOI":"10.1093\/bib\/4.3.228","volume":"4","author":"S.Y. Kim","year":"2003","unstructured":"Kim, S.Y., Imoto, S., Miyano, S.: Inferring gene networks from time series microarray data using dynamic Bayesian networks. Brief Bioinform.\u00a04(3), 228\u2013235 (2003)","journal-title":"Brief Bioinform."},{"key":"23_CR6","unstructured":"Chickering, D., Geiger, D., Heckerman, D.: Learning Bayesian networks is NP-hard. Technical Report MSR-TR-94-17, Microsoft Research (1994)"},{"issue":"1","key":"23_CR7","doi-asserted-by":"publisher","first-page":"71","DOI":"10.1093\/bioinformatics\/bth463","volume":"21","author":"M. Zou","year":"2005","unstructured":"Zou, M., Conzen, S.D.: A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data. Bioinformatics\u00a021(1), 71\u201379 (2005)","journal-title":"Bioinformatics"},{"key":"23_CR8","first-page":"295","volume":"58","author":"A. Hill","year":"1965","unstructured":"Hill, A.: The environment and disease: association or causation? Proc. R. Soc. Med.\u00a058, 295\u2013300 (1965)","journal-title":"Proc. R. Soc. Med."},{"key":"23_CR9","doi-asserted-by":"crossref","unstructured":"Phillips, C., Goodman, K.: The missed lessons of Sir Austin Bradford Hill. Epidemiologic Perspectives & Innovations\u00a01(3) (2004)","DOI":"10.1186\/1742-5573-1-3"},{"issue":"3","key":"23_CR10","doi-asserted-by":"publisher","first-page":"351","DOI":"10.1016\/j.cca.2004.08.008","volume":"138","author":"E. Linney","year":"2004","unstructured":"Linney, E., Dobbs-McAuliffe, B., Sajadi, H., Malek, R.L.: Microarray gene expression profiling during the segmentation phase of zebrafish development. Comp. Biochem. Physiol. C. Toxicol Pharmacol.\u00a0138(3), 351\u2013362 (2004)","journal-title":"Comp. Biochem. Physiol. C. Toxicol Pharmacol."},{"key":"23_CR11","doi-asserted-by":"crossref","DOI":"10.1002\/0470011084","volume-title":"Statistics for microarrays: design, analysis and inference","author":"E. Wit","year":"2004","unstructured":"Wit, E., McClure, J.: Statistics for microarrays: design, analysis and inference. John Wiley & Sons Ltd., Chichester (2004)"},{"issue":"4","key":"23_CR12","doi-asserted-by":"publisher","first-page":"282","DOI":"10.1016\/S1046-2023(03)00157-9","volume":"31","author":"P. Pavlidis","year":"2003","unstructured":"Pavlidis, P.: Using ANOVA for gene selection from microarray studies of the nervous system. Methods\u00a031(4), 282\u2013289 (2003)","journal-title":"Methods"},{"issue":"6","key":"23_CR13","doi-asserted-by":"publisher","first-page":"375","DOI":"10.1002\/bies.950140606","volume":"14","author":"D. Duboule","year":"1992","unstructured":"Duboule, D.: The vertebrate limb: a model system to study the Hox\/HOM gene network during development and evolution. Bioessays\u00a014(6), 375\u2013384 (1992)","journal-title":"Bioessays"},{"issue":"2","key":"23_CR14","doi-asserted-by":"publisher","first-page":"191","DOI":"10.1016\/0092-8674(94)90290-9","volume":"78","author":"R. Krumlauf","year":"1994","unstructured":"Krumlauf, R.: Hox genes in vertebrate development. Cell\u00a078(2), 191\u2013201 (1994)","journal-title":"Cell"},{"issue":"3","key":"23_CR15","doi-asserted-by":"crossref","first-page":"393","DOI":"10.1242\/dev.125.3.393","volume":"125","author":"V.E. Prince","year":"1998","unstructured":"Prince, V.E., Moens, C.B., Kimmel, C.B., Ho, R.K.: Zebrafish hox genes: expression in the hindbrain region of wild-type and mutants of the segmentation gene, valentino. Development\u00a0125(3), 393\u2013406 (1998)","journal-title":"Development"},{"issue":"2","key":"23_CR16","doi-asserted-by":"publisher","first-page":"318","DOI":"10.1016\/j.ydbio.2004.07.018","volume":"274","author":"R. Thummel","year":"2004","unstructured":"Thummel, R., Li, L., Tanase, C., Sarras, M.P., Godwin, A.R.: Differences in expression pattern and function between zebrafish hoxc13 orthologs: recruitment of Hoxc13b into an early embryonic role. Dev. Biol.\u00a0274(2), 318\u2013333 (2004)","journal-title":"Dev. Biol."},{"issue":"3","key":"23_CR17","doi-asserted-by":"crossref","first-page":"407","DOI":"10.1242\/dev.125.3.407","volume":"125","author":"V.E. Prince","year":"1998","unstructured":"Prince, V.E., Joly, L., Ekker, M., Ho, R.K.: Zebrafish hox genes: genomic organization and modified colinear expression patterns in the trunk. Development\u00a0125(3), 407\u2013420 (1998)","journal-title":"Development"},{"issue":"22","key":"23_CR18","doi-asserted-by":"crossref","first-page":"5103","DOI":"10.1242\/dev.129.22.5103","volume":"129","author":"S. Bel-Vialar","year":"2002","unstructured":"Bel-Vialar, S., Itasaki, N., Krumlauf, R.: Initiating Hox gene expression: in the early chick neural tube differential sensitivity to FGF and RA signaling subdivides the HoxB genes in two distinct groups. Development\u00a0129(22), 5103\u20135115 (2002)","journal-title":"Development"},{"issue":"16","key":"23_CR19","doi-asserted-by":"publisher","first-page":"3807","DOI":"10.1242\/dev.00573","volume":"130","author":"S. Forlani","year":"2003","unstructured":"Forlani, S., Lawson, K.A., Deschamps, J.: Acquisition of Hox codes during gastrulation and axial elongation in the mouse embryo. Development\u00a0130(16), 3807\u20133819 (2003)","journal-title":"Development"},{"issue":"3","key":"23_CR20","doi-asserted-by":"publisher","first-page":"270","DOI":"10.1002\/(SICI)1097-0177(199611)207:3<270::AID-AJA4>3.0.CO;2-E","volume":"207","author":"S.J. Gaunt","year":"1996","unstructured":"Gaunt, S.J., Strachan, L.: Temporal colinearity in expression of anterior Hox genes in developing chick embryos. Dev. Dyn.\u00a0207(3), 270\u2013280 (1996)","journal-title":"Dev. Dyn."},{"issue":"5","key":"23_CR21","doi-asserted-by":"crossref","first-page":"1497","DOI":"10.1002\/j.1460-2075.1989.tb03534.x","volume":"8","author":"D. Duboule","year":"1989","unstructured":"Duboule, D., Doll, P.: The structural and functional organization of the murine HOX gene family resembles that of Drosophila homeotic genes. EMBO J.\u00a08(5), 1497\u20131505 (1989)","journal-title":"EMBO J."},{"issue":"3","key":"23_CR22","doi-asserted-by":"publisher","first-page":"367","DOI":"10.1016\/0092-8674(89)90912-4","volume":"57","author":"A. Graham","year":"1989","unstructured":"Graham, A., Papalopulu, N., Krumlauf, R.: The murine and Drosophila homeobox gene complexes have common features of organization and expression. Cell\u00a057(3), 367\u2013378 (1989)","journal-title":"Cell"},{"issue":"5","key":"23_CR23","doi-asserted-by":"publisher","first-page":"514","DOI":"10.1016\/S0959-437X(98)80004-X","volume":"8","author":"D. Duboule","year":"1998","unstructured":"Duboule, D.: Vertebrate hox gene regulation: clustering and\/or colinearity? Curr. Opin. Genet. Dev.\u00a08(5), 514\u2013518 (1998)","journal-title":"Curr. Opin. Genet. Dev."},{"issue":"5631","key":"23_CR24","doi-asserted-by":"publisher","first-page":"331","DOI":"10.1126\/science.1085753","volume":"301","author":"M. Kmita","year":"2003","unstructured":"Kmita, M., Duboule, D.: Organizing axes in time and space; 25 years of colinear tinkering. Science\u00a0301(5631), 331\u2013333 (2003)","journal-title":"Science"},{"issue":"18","key":"23_CR25","doi-asserted-by":"publisher","first-page":"3565","DOI":"10.1093\/bioinformatics\/bth445","volume":"20","author":"A. Fuente de la","year":"2004","unstructured":"de la Fuente, A., Bing, N., Hoeschele, I., Mendes, P.: Discovery of meaningful associations in genomic data using partial correlation coefficients. Bioinformatics\u00a020(18), 3565\u20133574 (2004)","journal-title":"Bioinformatics"},{"issue":"3","key":"23_CR26","doi-asserted-by":"publisher","first-page":"253","DOI":"10.1002\/aja.1002030302","volume":"203","author":"C.B. Kimmel","year":"1995","unstructured":"Kimmel, C.B., Ballard, W.W., Kimmel, S.R., Ullmann, B., Schilling, T.F.: Stages of embryonic development of the zebrafish. Dev. Dyn.\u00a0203(3), 253\u2013310 (1995)","journal-title":"Dev. Dyn."},{"issue":"7","key":"23_CR27","first-page":"761","volume":"43","author":"F.J. Verbeek","year":"1999","unstructured":"Verbeek, F.J., Lawson, K.A., Bard, J.B.: Developmental bioinformatics: linking genetic data to virtual embryos. Int. J. Dev. Biol.\u00a043(7), 761\u2013771 (1999)","journal-title":"Int. J. Dev. Biol."},{"key":"23_CR28","doi-asserted-by":"crossref","unstructured":"Welten, M., De Haan, S., Bertens, L., Noordermeer, J., Lamers, G., Spaink, H., Meijer, A., Verbeek, F.: ZebraFISH: Fluorescent in situ hybridization protocol and 3D images of gene expression patterns. Zebrafish (accepted, 2006)","DOI":"10.1089\/zeb.2006.3.465"},{"issue":"18","key":"23_CR29","doi-asserted-by":"publisher","first-page":"4581","DOI":"10.1242\/dev.01327","volume":"131","author":"W.M. Knosp","year":"2004","unstructured":"Knosp, W.M., Scott, V., Bchinger, H.P., Stadler, H.S.: HOXA13 regulates the expression of bone morphogenetic proteins 2 and 7 to control distal limb morphogenesis. Development\u00a0131(18), 4581\u20134592 (2004)","journal-title":"Development"},{"issue":"2","key":"23_CR30","doi-asserted-by":"publisher","first-page":"426","DOI":"10.1016\/j.ydbio.2006.02.017","volume":"293","author":"S. Sakaguchi","year":"2006","unstructured":"Sakaguchi, S., Nakatani, Y., Takamatsu, N., Hori, H., Kawakami, A., Inohaya, K., Kudo, A.: Medaka unextended-fin mutants suggest a role for Hoxb8a in cell migration and osteoblast differentiation during appendage formation. Dev. Biol.\u00a0293(2), 426\u2013438 (2006)","journal-title":"Dev. Biol."}],"container-title":["Lecture Notes in Computer Science","Computational Life Sciences II"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/11875741_23","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,8,4]],"date-time":"2021-08-04T22:49:43Z","timestamp":1628117383000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/11875741_23"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006]]},"ISBN":["9783540457671","9783540457688"],"references-count":30,"URL":"https:\/\/doi.org\/10.1007\/11875741_23","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2006]]}}}