{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,4]],"date-time":"2024-09-04T18:41:56Z","timestamp":1725475316964},"publisher-location":"Berlin, Heidelberg","reference-count":14,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540490241"},{"type":"electronic","value":"9783540684237"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006]]},"DOI":"10.1007\/11925903_34","type":"book-chapter","created":{"date-parts":[[2006,12,13]],"date-time":"2006-12-13T16:03:04Z","timestamp":1166025784000},"page":"428-438","source":"Crossref","is-referenced-by-count":2,"title":["Experimental Validation of the Statistical Thermodynamic Model for Prediction of the Behavior of Autonomous Molecular Computers Based on DNA Hairpin Formation"],"prefix":"10.1007","author":[{"given":"Ken","family":"Komiya","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Satsuki","family":"Yaegashi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Masami","family":"Hagiya","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Akira","family":"Suyama","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"John A.","family":"Rose","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"34_CR1","doi-asserted-by":"crossref","unstructured":"Rose, J.A., Deaton, R.J., Suyama, A.: Statistical thermodynamic analysis and design of oligonucleotide based computers. Natural Computing\u00a03 (2004)","DOI":"10.1007\/s11047-004-2641-z"},{"key":"34_CR2","doi-asserted-by":"publisher","first-page":"411","DOI":"10.1007\/s11047-004-2643-x","volume":"4","author":"J.A. Rose","year":"2004","unstructured":"Rose, J.A., Suyama, A.: Physical modeling of biomolecular computers: Models, limitations, and experimental validation. Natural Computing\u00a04, 411\u2013426 (2004)","journal-title":"Natural Computing"},{"key":"34_CR3","doi-asserted-by":"crossref","unstructured":"Kubota, M., Ohtake, K., Komiya, K., Sakamoto, K., Hagiya, M.: Branching DNA machines based on transitions of hairpin structures. In: Proc. Congr. Evol. Comp (CEC 2003), pp. 2542\u20132548 (2003)","DOI":"10.1109\/CEC.2003.1299408"},{"key":"34_CR4","doi-asserted-by":"publisher","first-page":"81","DOI":"10.1016\/S0303-2647(99)00035-0","volume":"52","author":"K. Sakamoto","year":"1999","unstructured":"Sakamoto, K., Kiga, D., Komiya, K., Gouzu, H., Yokoyama, S., Ikeda, S., Sugiyama, H., Hagiya, M.: State transitions by molecules. Biosystems\u00a052, 81\u201391 (1999)","journal-title":"Biosystems"},{"key":"34_CR5","doi-asserted-by":"crossref","first-page":"18","DOI":"10.1016\/j.biosystems.2005.07.005","volume":"83","author":"K. Komiya","year":"2006","unstructured":"Komiya, K., Sakamoto, K., Kameda, A., Yamamoto, M., Ohuchi, A., Kiga, D., Yokoyama, S., Hagiya, M.: DNA polymerase programmed with a hairpin DNA incorporates a multiple-instruction architecture into molecular computing. Biosystems\u00a083, 18\u201325 (2006)","journal-title":"Biosystems"},{"key":"34_CR6","first-page":"1","volume":"65","author":"J.A. Rose","year":"2002","unstructured":"Rose, J.A., Deaton, R.J., Hagiya, M., Suyama, A.: Equilibrium analysis of the efficiency of an autonomous molecular computer. Phys. Rev. E\u00a065, 1\u201313 Article 021910 (2002)","journal-title":"Phys. Rev. E"},{"key":"34_CR7","doi-asserted-by":"crossref","unstructured":"Rose, J.A., Takano, M., Hagiya, M., Suyama, A.: A DNA computing-based genetic program for in vitro protein evolution via constrained pseudomodule shuffling. Journal of Genetic Programming and Evolvable Machines\u00a04 (2003)","DOI":"10.1007\/3-540-36440-4_5"},{"key":"34_CR8","doi-asserted-by":"crossref","unstructured":"Rose, J.A., Komiya, K., Yaegashi, S., Hagiya, M.: Displacement Whiplash PCR: optimized architecture and experimental validation. In: DNA Computing. 12 th Int\u2019l Workshop on DNA-Based Computers (in press, 2006)","DOI":"10.1007\/11925903_31"},{"key":"34_CR9","doi-asserted-by":"publisher","first-page":"122","DOI":"10.1093\/nar\/gnf121","volume":"30","author":"S. Marras","year":"2002","unstructured":"Marras, S., Kramer, F., Tyagi, S.: Efficiencies of FRET and and contact-mediated quenching in oligonucleotide probes. Nucl. Acids. Res.\u00a030, e122 (2002)","journal-title":"Nucl. Acids. Res."},{"key":"34_CR10","doi-asserted-by":"crossref","unstructured":"Yoshida, H., Suyama, A.: Solution to 3-sat by breadth first search. DNA Based Computers V, 9\u201322 (2000)","DOI":"10.1090\/dimacs\/054\/02"},{"key":"34_CR11","doi-asserted-by":"publisher","first-page":"2530","DOI":"10.1016\/S0006-3495(04)74308-8","volume":"86","author":"M.C. Murphy","year":"2004","unstructured":"Murphy, M.C., Rasnik, I., Cheng, W., Lohman, T.M., Ha, T.: Probing single-stranded DNA conformational flexibility using fluorescence spectroscopy. Biophysical Journal\u00a086, 2530\u20132537 (2004)","journal-title":"Biophysical Journal"},{"key":"34_CR12","volume-title":"Biophysical Chemistry, Part III: The Behavior of Biological Macromolecules","author":"C. Cantor","year":"1983","unstructured":"Cantor, C., Schimmel, P.: Biophysical Chemistry, Part III: The Behavior of Biological Macromolecules. W. H. Freeman, New York (1983)"},{"key":"34_CR13","doi-asserted-by":"publisher","first-page":"415","DOI":"10.1146\/annurev.biophys.32.110601.141800","volume":"33","author":"J. SantaLucia Jr.","year":"2004","unstructured":"SantaLucia Jr., J., Hicks, D.: The thermodynamics of DNA structural motifs. Annu. Rev. Biophy. Biomolec. Struct.\u00a033, 415\u2013440 (2004)","journal-title":"Annu. Rev. Biophy. Biomolec. Struct."},{"key":"34_CR14","doi-asserted-by":"publisher","first-page":"67","DOI":"10.1016\/0370-1573(85)90060-2","volume":"126","author":"R. Wartell","year":"1985","unstructured":"Wartell, R., Benight, A.: Thermal denaturation of DNA molecules: A comparison of theory with experiment. Phys. Rep.\u00a0126, 67\u2013107 (1985)","journal-title":"Phys. Rep."}],"container-title":["Lecture Notes in Computer Science","DNA Computing"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/11925903_34.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2021,4,27]],"date-time":"2021-04-27T07:46:26Z","timestamp":1619509586000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/11925903_34"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006]]},"ISBN":["9783540490241","9783540684237"],"references-count":14,"URL":"https:\/\/doi.org\/10.1007\/11925903_34","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2006]]}}}