{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,4]],"date-time":"2024-09-04T18:29:11Z","timestamp":1725474551361},"publisher-location":"Berlin, Heidelberg","reference-count":45,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540689706"},{"type":"electronic","value":"9783540689713"}],"license":[{"start":{"date-parts":[[2006,1,1]],"date-time":"2006-01-01T00:00:00Z","timestamp":1136073600000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006]]},"DOI":"10.1007\/11960669_8","type":"book-chapter","created":{"date-parts":[[2006,11,27]],"date-time":"2006-11-27T13:56:02Z","timestamp":1164635762000},"page":"78-93","source":"Crossref","is-referenced-by-count":1,"title":["Bioinformatics Data Source Integration Based on Semantic Relationships Across Species"],"prefix":"10.1007","author":[{"given":"Badr","family":"Al-Daihani","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alex","family":"Gray","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Peter","family":"Kille","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","reference":[{"key":"8_CR1","unstructured":"Aparicio, A.S., Farias, O.L.M., et al.: Applying Ontologies in the Integration of Heterogeneous Relational Databases. In: Australasian Ontology Workshop (AOW 2005), Sydney, Australia, ACS (2005)"},{"volume-title":"Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins","year":"2001","key":"8_CR2","unstructured":"Baxevanis, A.D., Ouellette, B.F.F. (eds.): Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins. John Wiley & Sons, New York (2001)"},{"key":"8_CR3","doi-asserted-by":"crossref","unstructured":"Ben-Miled, Z., Li, N., et al.: On the Integration of a Large Number of Life Science Web Databases. Lecture Notes in Bioinformatics (LNBI), pp. 172\u2013186 (2004)","DOI":"10.1007\/978-3-540-24745-6_12"},{"key":"8_CR4","unstructured":"Ben Milad, Z., Liu, Y., et al.: Distributed Databases (2003)"},{"issue":"2","key":"8_CR5","doi-asserted-by":"publisher","first-page":"72","DOI":"10.1145\/1024694.1024706","volume":"33","author":"J. Bleiholder","year":"2004","unstructured":"Bleiholder, J., Lacroix, Z.e., et al.: BioFast: Challenges in Exploring Linked Life Science Sources. SIGMOD Record\u00a033(2), 72\u201377 (2004)","journal-title":"SIGMOD Record"},{"key":"8_CR6","unstructured":"Carel, R.: Practical Data Integration In Biopharmaceutical Research and Development. PharmaGenomics, 22\u201335 (2003)"},{"issue":"12","key":"8_CR7","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1109\/2.116889","volume":"24","author":"C. Collet","year":"1991","unstructured":"Collet, C., Huhns, M.N., et al.: Resource Integration Using a Large Knowledge Base in Carnot. IEEE Computer\u00a024(12), 55\u201362 (1991)","journal-title":"IEEE Computer"},{"key":"8_CR8","doi-asserted-by":"crossref","unstructured":"Davidson, S., Crabtree, J., et al.: K2\/Kleisli and GUS: experiments in integrated access to genomic data sources. IBM Journal (2001)","DOI":"10.1147\/sj.402.0512"},{"key":"8_CR9","unstructured":"Decker, S., Erdmann, M., et al.: Ontobroker: Ontology Based Access to Distributed and Semi-Structured Information. Database Semantics - Semantic Issues in Multimedia Systems. In: Proceedings TC2\/WG 2.6 8th Working Conference on Database Semantics (DS-8), Rotorua, New Zealand. Kluwer Academic Publishers, Boston (1999)"},{"key":"8_CR10","doi-asserted-by":"crossref","unstructured":"Dennis Jr., G., Sherman, B.T., et al.: DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol.\u00a04(5), P3 (2003)","DOI":"10.1186\/gb-2003-4-5-p3"},{"key":"8_CR11","doi-asserted-by":"publisher","first-page":"114","DOI":"10.1016\/S0076-6879(96)66010-8","volume":"266","author":"T. Etzold","year":"1996","unstructured":"Etzold, T., Ulyanov, A., et al.: SRS: information retrieval system for molecular biology data banks. Methods Enzymol.\u00a0266, 114\u2013128 (1996)","journal-title":"Methods Enzymol."},{"issue":"2","key":"8_CR12","first-page":"37","volume":"2","author":"A. Freier","year":"2002","unstructured":"Freier, A., Hofestadt, R., et al.: BioDataServer: a SQL-based service for the online integration of life science data. Silico Biol.\u00a02(2), 37\u201357 (2002)","journal-title":"Silico Biol."},{"issue":"2","key":"8_CR13","doi-asserted-by":"publisher","first-page":"534","DOI":"10.1147\/sj.402.0532","volume":"40","author":"C. Goble","year":"2001","unstructured":"Goble, C., Stevens, R., et al.: Transparent Access to Multiple Bioinformatics Information Sources. IBM Systems Journal\u00a040(2), 534\u2013551 (2001)","journal-title":"IBM Systems Journal"},{"key":"8_CR14","doi-asserted-by":"publisher","first-page":"907","DOI":"10.1006\/ijhc.1995.1081","volume":"43","author":"T.R. Gruber","year":"1995","unstructured":"Gruber, T.R.: Toward principles for the design of ontologies used for knowledge sharing. International Journal of HumanComputer Studies\u00a043, 907\u2013928 (1995)","journal-title":"International Journal of HumanComputer Studies"},{"key":"8_CR15","unstructured":"Gupta, A., Lud\u00e4scher, B., et al.: Knowledge-Based Integration of Neuroscience Data Sources. In: 12th International Conference on Scientific and Statistical Database Management (SSDBM), Berlin, Germany. IEEE Computer Society Press, Los Alamitos (2000)"},{"key":"8_CR16","doi-asserted-by":"crossref","unstructured":"Heflin, J., Hendler, J.: Dynamic Ontologies on the Web. In: Proceedings of 17th National Conference on Artificial Intelligence (AAAI 2000), Menlo Park,CA. AAAI\/MIT Press (2000)","DOI":"10.21236\/ADA440528"},{"issue":"4","key":"8_CR17","doi-asserted-by":"publisher","first-page":"276","DOI":"10.1007\/s007780050029","volume":"5","author":"V. Kashyap","year":"1996","unstructured":"Kashyap, V., Sheth, A.P.: Semantic and schematic similarities between database objects: A context-based approach. VLDB Journal: Very Large Data Bases\u00a05(4), 276\u2013304 (1996)","journal-title":"VLDB Journal: Very Large Data Bases"},{"key":"8_CR18","series-title":"Multimedia information and systems","volume-title":"Bioinformatics: Managing Scientific Data","year":"2003","unstructured":"Lacroix, Z., Critchlow, T. (eds.): Bioinformatics: Managing Scientific Data. Multimedia information and systems. Morgan Kaufmann, San Francisco (2003)"},{"key":"8_CR19","unstructured":"Leser, U., Naumann, F.: (Almost) Hands-Off Information Integration for the Life Sciences. In: Proceedings of the Conference in Innovative Database Research (CIDR) 2005, Asilomar, CA (2005)"},{"key":"8_CR20","unstructured":"Necib, C.B., Freytag, J.C.: Using Ontologies for Database Query Reformulation. In: ADBIS (Local Proceedings) (2004)"},{"key":"8_CR21","doi-asserted-by":"publisher","first-page":"139","DOI":"10.1016\/S0933-3657(96)00369-7","volume":"9","author":"A. Rector","year":"1997","unstructured":"Rector, A., Bechhofer, S., et al.: The grail concept modelling language for medical terminology. Artificial Intelligence in Medicine\u00a09, 139\u2013171 (1997)","journal-title":"Artificial Intelligence in Medicine"},{"key":"8_CR22","unstructured":"Robert, H., Patricia, M.: SRS as a possible infrastructure for GBIF. GBIF DADI Meeting, San Diego (2002)"},{"key":"8_CR23","doi-asserted-by":"crossref","unstructured":"Venkatesh, T.V., Harlow, H.: Integromics: challenges in data integration. Genome Biology\u00a03(8), reports4027.1 \u2013 reports4027.3 (2002)","DOI":"10.1186\/gb-2002-3-8-reports4027"},{"key":"8_CR24","unstructured":"Wache, H., Ogele, T.V., et al.: Ontology-Based Integration of Information \u2014 A Survey of Existing Approaches. In: IJCAI 2001 Workshop on Ontologies and Information Sharing, Seattle, USA. (2001)"},{"issue":"3","key":"8_CR25","doi-asserted-by":"crossref","first-page":"38","DOI":"10.1109\/2.121508","volume":"25","author":"G. Wiederhold","year":"1992","unstructured":"Wiederhold, G.: Mediators in the architecture of future information systems. Computer\u00a025(3), 38\u201349 (1992); The Genomics Unified Schema(GUS) platform for Functional genomics (2004)","journal-title":"Computer"},{"key":"8_CR26","unstructured":"Al-Daihani, B., Gray, A., et al.: Soft Link Model(SLM) for Bioinformatics Data Source Integration. In: International Symposium on Health Informatics and Bioinformatics, Turkey 2005, Antalya, Turkey, Middle East Technical University (2005)"},{"issue":"1","key":"8_CR27","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1038\/75556","volume":"25","author":"M. Ashburner","year":"2000","unstructured":"Ashburner, M., Ball, C.A., et al.: Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet.\u00a025(1), 25\u201329 (2000)","journal-title":"Nat. Genet."},{"issue":"Database issue","key":"8_CR28","doi-asserted-by":"publisher","first-page":"34","DOI":"10.1093\/nar\/gki063","volume":"33","author":"D.A. Benson","year":"2005","unstructured":"Benson, D.A., Karsch-Mizrachi, I., et al.: GenBank. Nucleic Acids Res\u00a033(Database issue), D34\u2013D38 (2005)","journal-title":"Nucleic Acids Res"},{"issue":"2","key":"8_CR29","doi-asserted-by":"publisher","first-page":"72","DOI":"10.1145\/1024694.1024706","volume":"33","author":"J. Bleiholder","year":"2004","unstructured":"Bleiholder, J., Lacroix, Z.e., et al.: BioFast: Challenges in Exploring Linked Life Science Sources. SIGMOD Record\u00a033(2), 72\u201377 (2004)","journal-title":"SIGMOD Record"},{"issue":"2","key":"8_CR30","doi-asserted-by":"crossref","first-page":"259","DOI":"10.1021\/ci000109q","volume":"41","author":"R.E. Buntrock","year":"2001","unstructured":"Buntrock, R.E.: Chemical registries\u2013in the fourth decade of service. J. Chem. Inf. Comput. Sci.\u00a041(2), 259\u2013263 (2001)","journal-title":"J. Chem. Inf. Comput. Sci."},{"key":"8_CR31","doi-asserted-by":"publisher","first-page":"114","DOI":"10.1016\/S0076-6879(96)66010-8","volume":"266","author":"T. Etzold","year":"1996","unstructured":"Etzold, T., Ulyanov, A., et al.: SRS: information retrieval system for molecular biology data banks. Methods Enzymol.\u00a0266, 114\u2013128 (1996)","journal-title":"Methods Enzymol."},{"issue":"2","key":"8_CR32","first-page":"37","volume":"2","author":"A. Freier","year":"2002","unstructured":"Freier, A., Hofestadt, R., et al.: BioDataServer: a SQL-based service for the online integration of life science data. Silico Biol.\u00a02(2), 37\u201357 (2002)","journal-title":"Silico Biol."},{"key":"8_CR33","unstructured":"Gupta, A., Lud\u00e4scher, B., et al.: Knowledge-Based Integration of Neuroscience Data Sources. In: 12th International Conference on Scientific and Statistical Database Management (SSDBM), Berlin, Germany. IEEE Computer Society Press, Los Alamitos (2000)"},{"key":"8_CR34","doi-asserted-by":"crossref","unstructured":"Kanz, C., Aldebert, P., et al.: The EMBL Nucleotide Sequence Database. Nucleic Acids Res.\u00a033(Database issue), D29\u2013D33 (2005)","DOI":"10.1093\/nar\/gki098"},{"key":"8_CR35","doi-asserted-by":"crossref","unstructured":"Kohler, J.: SEMEDA: Ontology based semantic integration of biological databases (2003)","DOI":"10.1093\/bioinformatics\/btg340"},{"issue":"2","key":"8_CR36","first-page":"61","volume":"2","author":"J. Kohler","year":"2004","unstructured":"Kohler, J.: Integration of life science databases. BioSlico\u00a02(2), 61\u201369 (2004)","journal-title":"BioSlico"},{"key":"8_CR37","series-title":"Multimedia information and systems","volume-title":"Bioinformatics: Managing Scientific Data","year":"2003","unstructured":"Lacroix, Z., Critchlow, T. (eds.): Bioinformatics: Managing Scientific Data. Multimedia information and systems. Morgan Kaufmann, San Francisco (2003)"},{"key":"8_CR38","unstructured":"Leser, U., Naumann, F.: (Almost) Hands-Off Information Integration for the Life Sciences. In: Proceedings of the Conference in Innovative Database Research (CIDR) 2005, Asilomar, CA (2005)"},{"volume-title":"Bioinformatics: databases and systems","year":"1999","key":"8_CR39","unstructured":"Letovsky, S.L. (ed.): Bioinformatics: databases and systems. Kluwer Academic Publishers, Massachusetts (1999)"},{"issue":"Database issue","key":"8_CR40","doi-asserted-by":"crossref","first-page":"D54","DOI":"10.1093\/nar\/gki031","volume":"33","author":"D. Maglott","year":"2005","unstructured":"Maglott, D., Ostell, J., et al.: Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res.\u00a033(Database issue), D54\u2013D58 (2005)","journal-title":"Nucleic Acids Res"},{"issue":"6","key":"8_CR41","doi-asserted-by":"publisher","first-page":"746","DOI":"10.1109\/51.473269","volume":"14","author":"R.J. Robbins","year":"1995","unstructured":"Robbins, R.J.: Information infrastructure for the human genome project. IEEE Engineering in Medicine and Biology\u00a014(6), 746\u2013759 (1995)","journal-title":"IEEE Engineering in Medicine and Biology"},{"issue":"12","key":"8_CR42","doi-asserted-by":"publisher","first-page":"1013","DOI":"10.1016\/j.plaphy.2004.10.009","volume":"42","author":"M. Schneider","year":"2004","unstructured":"Schneider, M., Tognolli, M., et al.: The Swiss-Prot protein knowledgebase and ExPASy: providing the plant community with high quality proteomic data and tools. Plant Physiol Biochem.\u00a042(12), 1013\u20131021 (2004)","journal-title":"Plant Physiol Biochem."},{"issue":"5298","key":"8_CR43","doi-asserted-by":"publisher","first-page":"301","DOI":"10.1126\/science.275.5298.301","volume":"275","author":"N. Williams","year":"1997","unstructured":"Williams, N.: How to get databases talking the same language. Science\u00a0275(5298), 301\u2013302 (1997)","journal-title":"Science"},{"issue":"suppl. 1","key":"8_CR44","first-page":"D562","volume":"33","author":"T. Barrett","year":"2005","unstructured":"Barrett, T., Suzek, T.O., et al.: NCBI GEO: mining millions of expression profiles\u2013database and tools. Nucl. Acids Res. %R 10.1093\/nar\/gki022\u00a033(suppl. 1), D562\u2013D566 (2005)","journal-title":"Nucl. Acids Res. %R 10.1093\/nar\/gki022"},{"issue":"10","key":"8_CR45","doi-asserted-by":"publisher","first-page":"1275","DOI":"10.1093\/bioinformatics\/btg153","volume":"19","author":"P.W. Lord","year":"2003","unstructured":"Lord, P.W., Stevens, R.D., et al.: Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics %R 10.1093\/bioinformatics\/btg153\u00a019(10), 1275\u20131283 (2003)","journal-title":"Bioinformatics %R 10.1093\/bioinformatics\/btg153"}],"container-title":["Lecture Notes in Computer Science","Data Mining and Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/11960669_8","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,5,19]],"date-time":"2019-05-19T13:21:41Z","timestamp":1558272101000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/11960669_8"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006]]},"ISBN":["9783540689706","9783540689713"],"references-count":45,"URL":"https:\/\/doi.org\/10.1007\/11960669_8","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2006]]}}}