{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,26]],"date-time":"2025-10-26T14:09:49Z","timestamp":1761487789138},"publisher-location":"Berlin, Heidelberg","reference-count":22,"publisher":"Springer Berlin Heidelberg","isbn-type":[{"type":"print","value":"9783540403111"},{"type":"electronic","value":"9783540448884"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2003]]},"DOI":"10.1007\/3-540-44888-8_20","type":"book-chapter","created":{"date-parts":[[2007,3,5]],"date-time":"2007-03-05T11:34:12Z","timestamp":1173094452000},"page":"266-277","source":"Crossref","is-referenced-by-count":10,"title":["An Effective Algorithm for the Peptide De Novo Sequencing from MS\/MS Spectrum"],"prefix":"10.1007","author":[{"given":"Bin","family":"Ma","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kaizhong","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Chengzhi","family":"Liang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2003,5,27]]},"reference":[{"key":"20_CR1","doi-asserted-by":"publisher","first-page":"363","DOI":"10.1002\/bms.1200190607","volume":"19","author":"C. Bartels","year":"1990","unstructured":"Bartels, C. 1990. Fast algorithm for peptide sequencing by mass spectroscopy. Biomed. Environ. Mass Spectrom 19, 363\u2013368.","journal-title":"Biomed. Environ. Mass Spectrom"},{"issue":"3","key":"20_CR2","doi-asserted-by":"publisher","first-page":"325","DOI":"10.1089\/10665270152530872","volume":"8","author":"T. Chen","year":"2001","unstructured":"Chen, T., Kao, M-Y., Tepel, M., Rush J., and Church, G. 2001. A Dynamic Programming Approach to de novo Peptide Sequencing via Tandem Mass Spectrometry. J. Comp. Biology 8(3), 325\u2013337.","journal-title":"J. Comp. Biology"},{"key":"20_CR3","doi-asserted-by":"publisher","first-page":"327","DOI":"10.1089\/106652799318300","volume":"6","author":"V. Dan\u010d\u00edk","year":"1999","unstructured":"Dan\u010d\u00edk, V., Addona, T., Clauser, K., Vath, J., and Pevzner, P. 1999. De novo protein sequencing via tandem mass-spectrometry. J. Comp. Biology 6, 327\u2013341.","journal-title":"J. Comp. Biology"},{"key":"20_CR4","doi-asserted-by":"publisher","first-page":"976","DOI":"10.1016\/1044-0305(94)80016-2","volume":"5","author":"J.K. Eng","year":"1994","unstructured":"Eng, J.K., McCormack, A.L., and Yates, J.R. 1994. An approach to correlate tandem mass spectral data pf peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom 5, 976\u2013989.","journal-title":"J. Am. Soc. Mass Spectrom"},{"issue":"4","key":"20_CR5","first-page":"427","volume":"11","author":"J. Fern\u00e1ndez de Coss\u00edo","year":"1995","unstructured":"Fern\u00e1ndez de Coss\u00edo, J., Gonzales, J., and Besada, V. 1995. A computer program to aid the sequencing of peptides in collision-activated decomposition experiments. CABIOS 11(4), 427\u2013434.","journal-title":"CABIOS"},{"key":"20_CR6","first-page":"365","volume":"2","author":"C.W. Hamm","year":"1986","unstructured":"Hamm, C.W., Wilson, W.E., and Harvan, D.J. 1986. Peptide sequencing program. CABIOS 2, 365.","journal-title":"CABIOS"},{"key":"20_CR7","doi-asserted-by":"publisher","first-page":"326","DOI":"10.1016\/1044-0305(92)87060-C","volume":"3","author":"W.M. Hines","year":"1992","unstructured":"Hines, W.M., Falick, A.M., Burlingame, A.L., and Gibson, B.W. 1992. Pattern-based algorithm for peptide sequencing from tandem high energy collision-induced dissociation mass spectra. J. Am. Sco. Mass. Spectrom. 3, 326\u2013336.","journal-title":"J. Am. Sco. Mass. Spectrom."},{"key":"20_CR8","doi-asserted-by":"publisher","first-page":"373","DOI":"10.1002\/bms.1200130709","volume":"13","author":"K. Ishikawa","year":"1986","unstructured":"Ishikawa K., and Niva, Y. 1986. Computer-aided peptide sequencing by fast atom bombardment mass spectrometry. Biomed. Environ. Mass Spectrom. 13, 373\u2013380.","journal-title":"Biomed. Environ. Mass Spectrom."},{"key":"20_CR9","doi-asserted-by":"publisher","first-page":"945","DOI":"10.1002\/bms.1200181102","volume":"18","author":"R.J. Johnson","year":"1989","unstructured":"Johnson, R.J., and Biemann, K. 1989. Computer program (seqpep) to aid the interpretation of high-energy collision tandem mass spectra of peptides. Biomed. Environ. Mass. Spectrom. 18, 945\u2013957.","journal-title":"Biomed. Environ. Mass. Spectrom."},{"issue":"21","key":"20_CR10","doi-asserted-by":"publisher","first-page":"2621","DOI":"10.1021\/ac00148a019","volume":"59","author":"R.S. Johnson","year":"1987","unstructured":"Johnson, R.S., Martin, S.A., Biemann, K., Stults, J.T., and Watson, J.T. 1987. Novel fragmentation process of peptides by collision-induced decomposition in a tandem mass spectrometer: differentiation of leucine and isoleucine. Anal. Chem. 59(21), 2621\u20135.","journal-title":"Anal. Chem."},{"key":"20_CR11","unstructured":"Ma, B., Zhang, K., Lajoie, G., Doherty-Kirby, A., Liang, C., and Li, M. 2002. A powerful software tool for the de novo sequencing of peptides from MS\/MS data. 50th ASMS Conference on Mass Spectrometry and Allied Topics."},{"key":"20_CR12","doi-asserted-by":"publisher","first-page":"4390","DOI":"10.1021\/ac00096a002","volume":"66","author":"M. Mann","year":"1994","unstructured":"Mann, M., and Wilm, M. 1994. Error-tolerant identification of peptides in sequence databases by peptide sequence tags. Anal. Chem. 66, 4390\u20134399.","journal-title":"Anal. Chem."},{"key":"20_CR13","doi-asserted-by":"publisher","first-page":"3551","DOI":"10.1002\/(SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO;2-2","volume":"20","author":"D.N. Perkins","year":"1999","unstructured":"Perkins, D.N., Pappin, D.J.C., Creasy, D.M., and Cottrell, J.S. 1999. Probability-based protein identification by searching sequence database using mass spectrometry data. Electrophoresis 20, 3551\u20133567.","journal-title":"Electrophoresis"},{"key":"20_CR14","doi-asserted-by":"publisher","first-page":"777","DOI":"10.1089\/10665270050514927","volume":"6","author":"P.A. Pevzner","year":"2000","unstructured":"Pevzner, P.A., Dan\u010d\u00edk, V., and Tang, C. 2000. Mutation Tolerant Protein Identification by Mass Spectrometry. Journal of Computational Biology 6, 777\u2013787.","journal-title":"Journal of Computational Biology"},{"issue":"11","key":"20_CR15","doi-asserted-by":"publisher","first-page":"601","DOI":"10.1002\/bms.1200111109","volume":"11","author":"P. Roepstorff","year":"1984","unstructured":"Roepstorff, P., and Fohlman J. 1984. Proposal for a common nomenclature for sequence ions in mass spectra of peptides. Biomed Mass Spectrom 11(11), 601.","journal-title":"Biomed Mass Spectrom"},{"issue":"8","key":"20_CR16","doi-asserted-by":"publisher","first-page":"396","DOI":"10.1002\/bms.1200110806","volume":"11","author":"T. Sakurai","year":"1984","unstructured":"Sakurai, T., Matsuo, T., Matsuda, H., and Katakuse, I. 1984. Paas3: A computer program to determine probable sequence of peptides from mass spectrometric data. Biomed. Mass spectrum 11(8), 396\u2013399.","journal-title":"Biomed. Mass spectrum"},{"key":"20_CR17","doi-asserted-by":"publisher","first-page":"333","DOI":"10.1002\/bms.1200150606","volume":"15","author":"M.M. Siegel","year":"1988","unstructured":"Siegel, M.M., and Bauman, N. 1988. An efficient algorithm for sequencing peptides using fast atom bombardment mass spectral data. Biomed. Environ. Mass Spectrom 15, 333\u2013343.","journal-title":"Biomed. Environ. Mass Spectrom"},{"key":"20_CR18","unstructured":"Snyder, A.P. 2000. Interpreting Protein Mass Spectra: A Comprehensive Resource. Oxford University Press."},{"key":"20_CR19","doi-asserted-by":"publisher","first-page":"1067","DOI":"10.1002\/(SICI)1097-0231(19970615)11:9<1067::AID-RCM953>3.0.CO;2-L","volume":"11","author":"J.A. Taylor","year":"1997","unstructured":"Taylor, J.A., and Johnson, R.S. 1997. Sequence Database Searches via de novo peptide sequencing by tandem mass spectrometry. Rapid Communications in Mass Spectrometry 11, 1067\u20131075.","journal-title":"Rapid Communications in Mass Spectrometry"},{"key":"20_CR20","doi-asserted-by":"publisher","first-page":"1426","DOI":"10.1021\/ac00104a020","volume":"67","author":"J.R.I. Yates","year":"1995","unstructured":"Yates, J.R.I., Eng, J.K., McCormack, A.L., and Schieltz, D. 1995. Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database. Analytical Chemistry 67, 1426\u201336.","journal-title":"Analytical Chemistry"},{"key":"20_CR21","first-page":"477","volume-title":"Techniques in Protein Chmistry II","author":"J.R. Yates","year":"1991","unstructured":"Yates, J.R., Griffin, P.R., Hood, L.E., and Zhou, J.X. 1991. Computer aided interpretation of low energy MS\/MS mass spectra of peptides, 477\u2013485. in J.J. Villafranca ed., Techniques in Protein Chmistry II, Academic Press, San Diego."},{"key":"20_CR22","doi-asserted-by":"publisher","first-page":"13","DOI":"10.1002\/bms.1200190103","volume":"19","author":"Z. D","year":"1990","unstructured":"Zidarov, D., Thibault, P., Evans, M.J., and Bertrand, M.J. 1990. Determination of the primary structure of peptidesusing fast atom bombardment mass spectrometry. Biomed. Environ. Mass Spectrom 19, 13\u201316.","journal-title":"Biomed. Environ. Mass Spectrom"}],"container-title":["Lecture Notes in Computer Science","Combinatorial Pattern Matching"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/3-540-44888-8_20","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,2,15]],"date-time":"2019-02-15T22:30:23Z","timestamp":1550269823000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/3-540-44888-8_20"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2003]]},"ISBN":["9783540403111","9783540448884"],"references-count":22,"URL":"https:\/\/doi.org\/10.1007\/3-540-44888-8_20","relation":{},"ISSN":["0302-9743"],"issn-type":[{"type":"print","value":"0302-9743"}],"subject":[],"published":{"date-parts":[[2003]]}}}