{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,26]],"date-time":"2025-03-26T14:10:30Z","timestamp":1742998230032,"version":"3.40.3"},"publisher-location":"New York, NY","reference-count":38,"publisher":"Springer US","isbn-type":[{"type":"print","value":"9781071638613"},{"type":"electronic","value":"9781071638620"}],"license":[{"start":{"date-parts":[[2024,1,1]],"date-time":"2024-01-01T00:00:00Z","timestamp":1704067200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2024,1,1]],"date-time":"2024-01-01T00:00:00Z","timestamp":1704067200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2024]]},"DOI":"10.1007\/978-1-0716-3862-0_5","type":"book-chapter","created":{"date-parts":[[2024,5,14]],"date-time":"2024-05-14T14:02:11Z","timestamp":1715695331000},"page":"61-76","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Visualizing HIV-1 Assembly at the T-Cell Plasma Membrane Using Single-Molecule Localization Microscopy"],"prefix":"10.1007","author":[{"given":"Rayane","family":"Dibsy","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kaushik","family":"Inamdar","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Cyril","family":"Favard","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Delphine","family":"Muriaux","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2024,5,15]]},"reference":[{"key":"5_CR1","doi-asserted-by":"publisher","first-page":"672","DOI":"10.1038\/nsmb785","volume":"11","author":"JAG Briggs","year":"2004","unstructured":"Briggs JAG, Simon MN, Gross I et al (2004) The stoichiometry of Gag protein in HIV-1. Nat Struct Mol Biol 11:672\u2013675. https:\/\/doi.org\/10.1038\/nsmb785","journal-title":"Nat Struct Mol Biol"},{"key":"5_CR2","doi-asserted-by":"publisher","first-page":"701","DOI":"10.1016\/S0092-8674(03)00714-1","volume":"114","author":"UK von Schwedler","year":"2003","unstructured":"von Schwedler UK, Stuchell M, M\u00fcller B et al (2003) The protein network of HIV budding. Cell 114:701\u2013713","journal-title":"Cell"},{"key":"5_CR3","doi-asserted-by":"publisher","first-page":"108","DOI":"10.1016\/j.virusres.2014.06.015","volume":"193","author":"B Olety","year":"2014","unstructured":"Olety B, Ono A (2014) Roles played by acidic lipids in HIV-1 Gag membrane binding. Virus Res 193:108\u2013115. https:\/\/doi.org\/10.1016\/j.virusres.2014.06.015","journal-title":"Virus Res"},{"key":"5_CR4","doi-asserted-by":"publisher","first-page":"14889","DOI":"10.1073\/pnas.0405596101","volume":"101","author":"A Ono","year":"2004","unstructured":"Ono A, Ablan SD, Lockett SJ et al (2004) Phosphatidylinositol (4,5) bisphosphate regulates HIV-1 Gag targeting to the plasma membrane. Proc Natl Acad Sci USA 101:14889. https:\/\/doi.org\/10.1073\/pnas.0405596101","journal-title":"Proc Natl Acad Sci USA"},{"key":"5_CR5","doi-asserted-by":"publisher","first-page":"39332","DOI":"10.1038\/srep39332","volume":"6","author":"N Yandrapalli","year":"2016","unstructured":"Yandrapalli N, Lubart Q, Tanwar HS et al (2016) Self assembly of HIV-1 Gag protein on lipid membranes generates PI(4,5)P2\/cholesterol nanoclusters. Sci Rep 6:39332. https:\/\/doi.org\/10.1038\/srep39332","journal-title":"Sci Rep"},{"key":"5_CR6","doi-asserted-by":"publisher","first-page":"11364","DOI":"10.1073\/pnas.0602818103","volume":"103","author":"JS Saad","year":"2006","unstructured":"Saad JS, Miller J, Tai J et al (2006) Structural basis for targeting HIV-1 Gag proteins to the plasma membrane for virus assembly. Proc Natl Acad Sci USA 103:11364\u201311369. https:\/\/doi.org\/10.1073\/pnas.0602818103","journal-title":"Proc Natl Acad Sci USA"},{"key":"5_CR7","doi-asserted-by":"publisher","first-page":"246","DOI":"10.3390\/v8090246","volume":"8","author":"M Comas-Garcia","year":"2016","unstructured":"Comas-Garcia M, Davis SR, Rein A (2016) On the selective packaging of genomic RNA by HIV-1. Viruses 8:246. https:\/\/doi.org\/10.3390\/v8090246","journal-title":"Viruses"},{"key":"5_CR8","doi-asserted-by":"publisher","first-page":"236","DOI":"10.1038\/nature06998","volume":"454","author":"N Jouvenet","year":"2008","unstructured":"Jouvenet N, Bieniasz PD, Simon SM (2008) Imaging the biogenesis of individual HIV-1 virions in live cells. Nature 454:236\u2013240","journal-title":"Nature"},{"key":"5_CR9","doi-asserted-by":"publisher","first-page":"1642","DOI":"10.1126\/science.1127344","volume":"313","author":"E Betzig","year":"2006","unstructured":"Betzig E, Patterson GH, Sougrat R et al (2006) Imaging intracellular fluorescent proteins at nanometer resolution. Science 313:1642. https:\/\/doi.org\/10.1126\/science.1127344","journal-title":"Science"},{"key":"5_CR10","doi-asserted-by":"publisher","first-page":"793","DOI":"10.1038\/nmeth929","volume":"3","author":"MJ Rust","year":"2006","unstructured":"Rust MJ, Bates M, Zhuang X (2006) Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nat Methods 3:793\u2013795. https:\/\/doi.org\/10.1038\/nmeth929","journal-title":"Nat Methods"},{"key":"5_CR11","doi-asserted-by":"publisher","first-page":"225","DOI":"10.1038\/349225a0","volume":"349","author":"WP Ambrose","year":"1991","unstructured":"Ambrose WP, Moerner WE (1991) Fluorescence spectroscopy and spectral diffusion of single impurity molecules in a crystal. Nature 349:225","journal-title":"Nature"},{"key":"5_CR12","doi-asserted-by":"publisher","first-page":"491","DOI":"10.1016\/j.jmb.2011.04.021","volume":"410","author":"JAG Briggs","year":"2011","unstructured":"Briggs JAG, Kr\u00e4usslich H-G (2011) The molecular architecture of HIV. J Mol Biol 410:491\u2013500. https:\/\/doi.org\/10.1016\/j.jmb.2011.04.021","journal-title":"J Mol Biol"},{"key":"5_CR13","doi-asserted-by":"publisher","first-page":"15","DOI":"10.1111\/tra.12006","volume":"14","author":"J Chojnacki","year":"2013","unstructured":"Chojnacki J, M\u00fcller B (2013) Investigation of HIV-1 assembly and release using modern fluorescence imaging techniques. Traffic 14:15\u201324. https:\/\/doi.org\/10.1111\/tra.12006","journal-title":"Traffic"},{"key":"5_CR14","doi-asserted-by":"publisher","first-page":"72","DOI":"10.3390\/v11010072","volume":"11","author":"K Inamdar","year":"2019","unstructured":"Inamdar K, Floderer C, Favard C, Muriaux D (2019) Monitoring HIV-1 assembly in living cells: insights from dynamic and single molecule microscopy. Viruses 11:72. https:\/\/doi.org\/10.3390\/v11010072","journal-title":"Viruses"},{"key":"5_CR15","doi-asserted-by":"publisher","first-page":"47","DOI":"10.1684\/vir.2021.0908","volume":"25","author":"C Arone","year":"2021","unstructured":"Arone C, Dibsy R, Inamdar K et al (2021) Illuminating the nanoscopic world of viruses by fluorescence super-resolution microscopy. Virologie 25:47\u201360. https:\/\/doi.org\/10.1684\/vir.2021.0908","journal-title":"Virologie"},{"key":"5_CR16","doi-asserted-by":"publisher","first-page":"223","DOI":"10.3390\/v13020223","volume":"13","author":"S Saffarian","year":"2021","unstructured":"Saffarian S (2021) Application of advanced light microscopy to the study of HIV and its interactions with the host. Viruses 13:223. https:\/\/doi.org\/10.3390\/v13020223","journal-title":"Viruses"},{"key":"5_CR17","doi-asserted-by":"publisher","first-page":"19114","DOI":"10.1073\/pnas.0907364106","volume":"106","author":"N Jouvenet","year":"2009","unstructured":"Jouvenet N, Simon SM, Bieniasz PD (2009) Imaging the interaction of HIV-1 genomes and Gag during assembly of individual viral particles. Proc Natl Acad Sci USA 106:19114\u201319119. https:\/\/doi.org\/10.1073\/pnas.0907364106","journal-title":"Proc Natl Acad Sci USA"},{"key":"5_CR18","doi-asserted-by":"publisher","first-page":"6352","DOI":"10.1128\/JVI.00363-10","volume":"84","author":"I Kemler","year":"2010","unstructured":"Kemler I, Meehan A, Poeschla EM (2010) Live-cell coimaging of the genomic RNAs and Gag proteins of two lentiviruses. J Virol 84:6352\u20136366. https:\/\/doi.org\/10.1128\/JVI.00363-10","journal-title":"J Virol"},{"key":"5_CR19","doi-asserted-by":"publisher","first-page":"12211","DOI":"10.1073\/pnas.1321655111","volume":"111","author":"M Bleck","year":"2014","unstructured":"Bleck M, Itano MS, Johnson DS et al (2014) Temporal and spatial organization of ESCRT protein recruitment during HIV-1 budding. Proc Natl Acad Sci USA 111:12211\u201312216. https:\/\/doi.org\/10.1073\/pnas.1321655111","journal-title":"Proc Natl Acad Sci USA"},{"key":"5_CR20","doi-asserted-by":"publisher","first-page":"469","DOI":"10.1038\/ncb2215","volume":"13","author":"V Baumg\u00e4rtel","year":"2011","unstructured":"Baumg\u00e4rtel V, Ivanchenko S, Dupont A et al (2011) Live-cell visualization of dynamics of HIV budding site interactions with an ESCRT component. Nat Cell Biol 13:469\u2013474. https:\/\/doi.org\/10.1038\/ncb2215","journal-title":"Nat Cell Biol"},{"key":"5_CR21","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1000652","volume":"5","author":"S Ivanchenko","year":"2009","unstructured":"Ivanchenko S, Godinez WJ, Lampe M et al (2009) Dynamics of HIV-1 assembly and release. PLoS Pathog 5:e1000652. https:\/\/doi.org\/10.1371\/journal.ppat.1000652","journal-title":"PLoS Pathog"},{"key":"5_CR22","doi-asserted-by":"publisher","first-page":"685","DOI":"10.1038\/nrm.2017.71","volume":"18","author":"SJ Sahl","year":"2017","unstructured":"Sahl SJ, Hell SW, Jakobs S (2017) Fluorescence nanoscopy in cell biology. Nat Rev Mol Cell Biol 18:685","journal-title":"Nat Rev Mol Cell Biol"},{"key":"5_CR23","doi-asserted-by":"publisher","first-page":"39","DOI":"10.1038\/s43586-021-00038-x","volume":"1","author":"M Lelek","year":"2021","unstructured":"Lelek M, Gyparaki MT, Beliu G et al (2021) Single-molecule localization microscopy. Nat Rev Methods Primers 1:39. https:\/\/doi.org\/10.1038\/s43586-021-00038-x","journal-title":"Nat Rev Methods Primers"},{"key":"5_CR24","doi-asserted-by":"publisher","first-page":"4705","DOI":"10.1021\/nl3021076","volume":"12","author":"J Gunzenh\u00e4user","year":"2012","unstructured":"Gunzenh\u00e4user J, Olivier N, Pengo T, Manley S (2012) Quantitative super-resolution imaging reveals protein stoichiometry and nanoscale morphology of assembling HIV-Gag virions. Nano Lett 12:4705\u20134710. https:\/\/doi.org\/10.1021\/nl3021076","journal-title":"Nano Lett"},{"key":"5_CR25","doi-asserted-by":"publisher","first-page":"16283","DOI":"10.1038\/s41598-018-34536-y","volume":"8","author":"C Floderer","year":"2018","unstructured":"Floderer C, Masson J-B, Boilley E et al (2018) Single molecule localisation microscopy reveals how HIV-1 Gag proteins sense membrane virus assembly sites in living host CD4 T cells. Sci Rep 8:16283. https:\/\/doi.org\/10.1038\/s41598-018-34536-y","journal-title":"Sci Rep"},{"key":"5_CR26","doi-asserted-by":"publisher","first-page":"173","DOI":"10.1007\/s00418-012-1014-4","volume":"139","author":"S Malkusch","year":"2013","unstructured":"Malkusch S, Muranyi W, M\u00fcller B et al (2013) Single-molecule coordinate-based analysis of the morphology of HIV-1 assembly sites with near-molecular spatial resolution. Histochem Cell Biol 139:173\u2013179. https:\/\/doi.org\/10.1007\/s00418-012-1014-4","journal-title":"Histochem Cell Biol"},{"key":"5_CR27","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1003198","volume":"9","author":"W Muranyi","year":"2013","unstructured":"Muranyi W, Malkusch S, M\u00fcller B et al (2013) Super-resolution microscopy reveals specific recruitment of HIV-1 envelope proteins to viral assembly sites dependent on the envelope C-terminal tail. PLoS Pathog 9:e1003198. https:\/\/doi.org\/10.1371\/journal.ppat.1003198","journal-title":"PLoS Pathog"},{"key":"5_CR28","doi-asserted-by":"publisher","DOI":"10.1371\/journal.ppat.1002456","volume":"7","author":"M Lehmann","year":"2011","unstructured":"Lehmann M, Rocha S, Mangeat B et al (2011) Quantitative multicolor super-resolution microscopy reveals tetherin HIV-1 interaction. PLoS Pathog 7:e1002456. https:\/\/doi.org\/10.1371\/journal.ppat.1002456","journal-title":"PLoS Pathog"},{"key":"5_CR29","doi-asserted-by":"publisher","DOI":"10.7554\/eLife.67321","volume":"10","author":"K Inamdar","year":"2021","unstructured":"Inamdar K, Tsai F-C, Dibsy R et al (2021) Full assembly of HIV-1 particles requires assistance of the membrane curvature factor IRSp53. Elife 10:e67321. https:\/\/doi.org\/10.7554\/eLife.67321","journal-title":"Elife"},{"key":"5_CR30","doi-asserted-by":"publisher","first-page":"6945","DOI":"10.1038\/s41467-023-41940-0","volume":"14","author":"R Dibsy","year":"2023","unstructured":"Dibsy R, Bremaud E, Mak J et al (2023) HIV-1 diverts cortical actin for particle assembly and release. Nat Commun 14:6945","journal-title":"Nat Commun"},{"key":"5_CR31","doi-asserted-by":"publisher","first-page":"909","DOI":"10.1038\/s41592-020-0918-5","volume":"17","author":"R Diekmann","year":"2020","unstructured":"Diekmann R, Kahnwald M, Schoenit A et al (2020) Optimizing imaging speed and excitation intensity for single-molecule localization microscopy. Nat Methods 17:909\u2013912. https:\/\/doi.org\/10.1038\/s41592-020-0918-5","journal-title":"Nat Methods"},{"key":"5_CR32","doi-asserted-by":"publisher","first-page":"387","DOI":"10.1038\/s41592-019-0364-4","volume":"16","author":"D Sage","year":"2019","unstructured":"Sage D, Pham T-A, Babcock H et al (2019) Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software. Nat Methods 16:387\u2013395. https:\/\/doi.org\/10.1038\/s41592-019-0364-4","journal-title":"Nat Methods"},{"key":"5_CR33","doi-asserted-by":"publisher","first-page":"2389","DOI":"10.1093\/bioinformatics\/btu202","volume":"30","author":"M Ovesn\u00fd","year":"2014","unstructured":"Ovesn\u00fd M, K\u0159\u00ed\u017eek P, Borkovec J et al (2014) ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging. Bioinformatics 30:2389\u20132390. https:\/\/doi.org\/10.1093\/bioinformatics\/btu202","journal-title":"Bioinformatics"},{"key":"5_CR34","doi-asserted-by":"publisher","DOI":"10.1016\/j.patter.2020.100038","volume":"1","author":"IM Khater","year":"2020","unstructured":"Khater IM, Nabi IR, Hamarneh G (2020) A review of super-resolution single-molecule localization microscopy cluster analysis and quantification methods. Patterns 1:100038. https:\/\/doi.org\/10.1016\/j.patter.2020.100038","journal-title":"Patterns"},{"key":"5_CR35","doi-asserted-by":"publisher","first-page":"1065","DOI":"10.1038\/nmeth.3579","volume":"12","author":"F Levet","year":"2015","unstructured":"Levet F, Hosy E, Kechkar A et al (2015) SR-Tesseler: a method to segment and quantify localization-based super-resolution microscopy data. Nat Methods 12:1065\u20131071. https:\/\/doi.org\/10.1038\/nmeth.3579","journal-title":"Nat Methods"},{"key":"5_CR36","doi-asserted-by":"publisher","first-page":"34486","DOI":"10.1038\/srep34486","volume":"6","author":"S Malkusch","year":"2016","unstructured":"Malkusch S, Heilemann M (2016) Extracting quantitative information from single-molecule super-resolution imaging data with LAMA\u2014LocAlization Microscopy Analyzer. Sci Rep 6:34486. https:\/\/doi.org\/10.1038\/srep34486","journal-title":"Sci Rep"},{"key":"5_CR37","doi-asserted-by":"publisher","first-page":"155","DOI":"10.1038\/nmeth.1176","volume":"5","author":"S Manley","year":"2008","unstructured":"Manley S, Gillette JM, Patterson GH et al (2008) High-density mapping of single-molecule trajectories with photoactivated localization microscopy. Nat Methods 5:155\u2013157. https:\/\/doi.org\/10.1038\/nmeth.1176","journal-title":"Nat Methods"},{"key":"5_CR38","doi-asserted-by":"publisher","first-page":"581","DOI":"10.1016\/j.bpj.2020.06.023","volume":"119","author":"I Saha","year":"2020","unstructured":"Saha I, Saffarian S (2020) Dynamics of the HIV Gag lattice detected by localization correlation analysis and time-lapse iPALM. Biophys J 119:581\u2013592. https:\/\/doi.org\/10.1016\/j.bpj.2020.06.023","journal-title":"Biophys J"}],"container-title":["Methods in Molecular Biology","HIV Protocols"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-1-0716-3862-0_5","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,5,14]],"date-time":"2024-05-14T14:05:45Z","timestamp":1715695545000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-1-0716-3862-0_5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024]]},"ISBN":["9781071638613","9781071638620"],"references-count":38,"URL":"https:\/\/doi.org\/10.1007\/978-1-0716-3862-0_5","relation":{},"ISSN":["1064-3745","1940-6029"],"issn-type":[{"type":"print","value":"1064-3745"},{"type":"electronic","value":"1940-6029"}],"subject":[],"published":{"date-parts":[[2024]]},"assertion":[{"value":"15 May 2024","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}}]}}