{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,18]],"date-time":"2026-06-18T02:54:49Z","timestamp":1781751289833,"version":"3.54.5"},"publisher-location":"New York, NY","reference-count":22,"publisher":"Springer US","isbn-type":[{"value":"9781071647905","type":"print"},{"value":"9781071647912","type":"electronic"}],"license":[{"start":{"date-parts":[[2025,10,1]],"date-time":"2025-10-01T00:00:00Z","timestamp":1759276800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2025,10,1]],"date-time":"2025-10-01T00:00:00Z","timestamp":1759276800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2026]]},"DOI":"10.1007\/978-1-0716-4791-2_3","type":"book-chapter","created":{"date-parts":[[2025,9,30]],"date-time":"2025-09-30T23:40:04Z","timestamp":1759275604000},"page":"29-50","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["Strategies for Coexpression of Bilin-Producing Enzymes in Escherichia coli"],"prefix":"10.1007","author":[{"given":"Oliver Maximilian","family":"Eder","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marta","family":"Jan\u010di\u0107","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Andreas","family":"Winkler","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2025,10,1]]},"reference":[{"issue":"1","key":"3_CR1","doi-asserted-by":"publisher","first-page":"13","DOI":"10.1021\/ar020219d","volume":"37","author":"MA van der Horst","year":"2004","unstructured":"van der Horst MA, Hellingwerf KJ (2004) Photoreceptor proteins, \u201cstar actors of modern times\u201d: a review of the functional dynamics in the structure of representative members of six different photoreceptor families. Acc Chem Res 37(1):13\u201320. https:\/\/doi.org\/10.1021\/ar020219d","journal-title":"Acc Chem Res"},{"issue":"1","key":"3_CR2","doi-asserted-by":"publisher","first-page":"153","DOI":"10.1146\/annurev-arplant-070623-110636","volume":"75","author":"J Hughes","year":"2024","unstructured":"Hughes J, Winkler A (2024) New insight into phytochromes: connecting structure to function. Annu Rev Plant Biol 75(1):153\u2013183. https:\/\/doi.org\/10.1146\/annurev-arplant-070623-110636","journal-title":"Annu Rev Plant Biol"},{"key":"3_CR3","doi-asserted-by":"publisher","first-page":"156","DOI":"10.1002\/9780470514535.ch9","volume":"180","author":"SI Beale","year":"1994","unstructured":"Beale SI (1994) Biosynthesis of open-chain tetrapyrroles in plants, algae, and cyanobacteria. Ciba Found Symp 180:156\u2013168; discussion 168\u201371. https:\/\/doi.org\/10.1002\/9780470514535.ch9","journal-title":"Ciba Found Symp"},{"key":"3_CR4","doi-asserted-by":"publisher","DOI":"10.1126\/sciadv.1602498","volume":"3","author":"G Gourinchas","year":"2017","unstructured":"Gourinchas G, Etzl S, G\u00f6bl C et al (2017) Long-range allosteric signaling in red light-regulated diguanylyl cyclases. Sci Adv 3:e1602498. https:\/\/doi.org\/10.1126\/sciadv.1602498","journal-title":"Sci Adv"},{"key":"3_CR5","doi-asserted-by":"publisher","first-page":"498","DOI":"10.3389\/fpls.2018.00498","volume":"9","author":"C Song","year":"2018","unstructured":"Song C, Mroginski MA, Lang C et al (2018) 3D structures of plant phytochrome A as Pr and Pfr from solid-state NMR: implications for molecular function. Front Plant Sci 9:498. https:\/\/doi.org\/10.3389\/fpls.2018.00498","journal-title":"Front Plant Sci"},{"issue":"3","key":"3_CR6","doi-asserted-by":"publisher","first-page":"459","DOI":"10.1016\/s0014-5793(01)02988-x","volume":"508","author":"FT Landgraf","year":"2001","unstructured":"Landgraf FT, Forreiter C, Hurtado Pic\u00f3 A et al (2001) Recombinant holophytochrome in Escherichia coli. FEBS Lett 508(3):459\u2013462. https:\/\/doi.org\/10.1016\/s0014-5793(01)02988-x","journal-title":"FEBS Lett"},{"issue":"19","key":"3_CR7","doi-asserted-by":"publisher","first-page":"10566","DOI":"10.1073\/pnas.191375198","volume":"98","author":"GA Gambetta","year":"2001","unstructured":"Gambetta GA, Lagarias JC (2001) Genetic engineering of phytochrome biosynthesis in bacteria. Proc Natl Acad Sci USA 98(19):10566\u201310571. https:\/\/doi.org\/10.1073\/pnas.191375198","journal-title":"Proc Natl Acad Sci USA"},{"issue":"38","key":"3_CR8","doi-asserted-by":"publisher","first-page":"14715","DOI":"10.1073\/pnas.0806718105","volume":"105","author":"X Yang","year":"2008","unstructured":"Yang X, Kuk J, Moffat K (2008) Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: photoconversion and signal transduction. Proc Natl Acad Sci USA 105(38):14715\u201314720. https:\/\/doi.org\/10.1073\/pnas.0806718105","journal-title":"Proc Natl Acad Sci USA"},{"issue":"5","key":"3_CR9","doi-asserted-by":"publisher","first-page":"754","DOI":"10.1111\/j.1751-1097.1998.tb02541.x","volume":"68","author":"P Schmidt","year":"1998","unstructured":"Schmidt P, Gertsch T, Remberg A et al (1998) The complexity of the Pr to Pfr phototransformation kinetics is an intrinsic property of native phytochrome. Photochem Photobiol 68(5):754\u2013761. https:\/\/doi.org\/10.1111\/j.1751-1097.1998.tb02541.x","journal-title":"Photochem Photobiol"},{"issue":"5","key":"3_CR10","doi-asserted-by":"publisher","first-page":"1333","DOI":"10.1016\/j.febslet.2006.01.051","volume":"580","author":"K Mukougawa","year":"2006","unstructured":"Mukougawa K, Kanamoto H, Kobayashi T et al (2006) Metabolic engineering to produce phytochromes with phytochromobilin, phycocyanobilin, or phycoerythrobilin chromophore in Escherichia coli. FEBS Lett 580(5):1333\u20131338. https:\/\/doi.org\/10.1016\/j.febslet.2006.01.051","journal-title":"FEBS Lett"},{"issue":"46","key":"3_CR11","doi-asserted-by":"publisher","first-page":"34751","DOI":"10.1074\/jbc.M604819200","volume":"281","author":"M Tarutina","year":"2006","unstructured":"Tarutina M, Ryjenkov DA, Gomelsky M (2006) An unorthodox bacteriophytochrome from Rhodobacter sphaeroides involved in turnover of the second messenger c-di-GMP. J Biol Chem 281(46):34751\u201334758. https:\/\/doi.org\/10.1074\/jbc.M604819200","journal-title":"J Biol Chem"},{"issue":"10","key":"3_CR12","doi-asserted-by":"publisher","first-page":"3354","DOI":"10.1021\/acssynbio.2c00259","volume":"11","author":"E Multam\u00e4ki","year":"2022","unstructured":"Multam\u00e4ki E, Garc\u00eda de Fuentes A, Sieryi O et al (2022) Optogenetic control of bacterial expression by red light. ACS Synth Biol 11(10):3354\u20133367. https:\/\/doi.org\/10.1021\/acssynbio.2c00259","journal-title":"ACS Synth Biol"},{"issue":"3","key":"3_CR13","doi-asserted-by":"publisher","first-page":"154","DOI":"10.1038\/s41576-021-00417-w","volume":"23","author":"BW Wright","year":"2022","unstructured":"Wright BW, Molloy MP, Jaschke PR (2022) Overlapping genes in natural and engineered genomes. Nat Rev Genet 23(3):154\u2013168. https:\/\/doi.org\/10.1038\/s41576-021-00417-w","journal-title":"Nat Rev Genet"},{"issue":"5","key":"3_CR14","doi-asserted-by":"publisher","first-page":"620","DOI":"10.1093\/abbs\/gmab036","volume":"53","author":"Q Li","year":"2021","unstructured":"Li Q, Sun B, Chen J et al (2021) A modified pCas\/pTargetF system for CRISPR-Cas9-assisted genome editing in Escherichia coli. Acta Biochim Biophys Sin Shanghai 53(5):620\u2013627. https:\/\/doi.org\/10.1093\/abbs\/gmab036","journal-title":"Acta Biochim Biophys Sin Shanghai"},{"issue":"6","key":"3_CR15","doi-asserted-by":"publisher","first-page":"679","DOI":"10.1038\/s41592-022-01488-1","volume":"19","author":"M Mirdita","year":"2022","unstructured":"Mirdita M, Sch\u00fctze K, Moriwaki Y et al (2022) ColabFold: making protein folding accessible to all. Nat Methods 19(6):679\u2013682. https:\/\/doi.org\/10.1038\/s41592-022-01488-1","journal-title":"Nat Methods"},{"issue":"2","key":"3_CR16","doi-asserted-by":"publisher","first-page":"243","DOI":"10.1038\/s41587-023-01773-0","volume":"42","author":"M van Kempen","year":"2024","unstructured":"van Kempen M, Kim SS, Tumescheit C et al (2024) Fast and accurate protein structure search with Foldseek. Nat Biotechnol 42(2):243\u2013246. https:\/\/doi.org\/10.1038\/s41587-023-01773-0","journal-title":"Nat Biotechnol"},{"issue":"10","key":"3_CR17","doi-asserted-by":"publisher","first-page":"1761","DOI":"10.1007\/s43630-022-00255-7","volume":"21","author":"C B\u00f6hm","year":"2022","unstructured":"B\u00f6hm C, Gourinchas G, Zweytick S et al (2022) Characterisation of sequence-structure-function space in sensor-effector integrators of phytochrome-regulated diguanylate cyclases. Photochem Photobiol Sci 21(10):1761\u20131779. https:\/\/doi.org\/10.1007\/s43630-022-00255-7","journal-title":"Photochem Photobiol Sci"},{"issue":"12","key":"3_CR18","doi-asserted-by":"publisher","first-page":"2209","DOI":"10.1021\/acssynbio.7b00174","volume":"6","author":"EA Moreb","year":"2017","unstructured":"Moreb EA, Hoover B, Yaseen A et al (2017) Managing the SOS response for enhanced CRISPR-Cas-based recombineering in E. coli through transient inhibition of host RecA activity. ACS Synth Biol 6(12):2209\u20132218. https:\/\/doi.org\/10.1021\/acssynbio.7b00174","journal-title":"ACS Synth Biol"},{"issue":"6","key":"3_CR19","doi-asserted-by":"publisher","first-page":"463","DOI":"10.2144\/000113418","volume":"48","author":"AV Bryksin","year":"2010","unstructured":"Bryksin AV, Matsumura I (2010) Overlap extension PCR cloning: a simple and reliable way to create recombinant plasmids. BioTechniques 48(6):463\u2013465. https:\/\/doi.org\/10.2144\/000113418","journal-title":"BioTechniques"},{"issue":"7","key":"3_CR20","doi-asserted-by":"publisher","first-page":"2506","DOI":"10.1128\/AEM.04023-14","volume":"81","author":"Y Jiang","year":"2015","unstructured":"Jiang Y, Chen B, Duan C et al (2015) Multigene editing in the Escherichia coli genome via the CRISPR-Cas9 system. Appl Environ Microbiol 81(7):2506\u20132514. https:\/\/doi.org\/10.1128\/AEM.04023-14","journal-title":"Appl Environ Microbiol"},{"issue":"4","key":"3_CR21","doi-asserted-by":"publisher","first-page":"710","DOI":"10.1021\/acssynbio.6b00350","volume":"6","author":"JA Englaender","year":"2017","unstructured":"Englaender JA, Jones JA, Cress BF et al (2017) Effect of genomic integration location on heterologous protein expression and metabolic engineering in E. coli. ACS Synth Biol 6(4):710\u2013720. https:\/\/doi.org\/10.1021\/acssynbio.6b00350","journal-title":"ACS Synth Biol"},{"key":"3_CR22","doi-asserted-by":"publisher","first-page":"91","DOI":"10.1186\/1472-6750-8-91","volume":"8","author":"H Liu","year":"2008","unstructured":"Liu H, Naismith JH (2008) An efficient one-step site-directed deletion, insertion, single and multiple-site plasmid mutagenesis protocol. BMC Biotechnol 8:91. https:\/\/doi.org\/10.1186\/1472-6750-8-91","journal-title":"BMC Biotechnol"}],"container-title":["Methods in Molecular Biology","Phytochromes"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-1-0716-4791-2_3","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,6,18]],"date-time":"2026-06-18T02:46:31Z","timestamp":1781750791000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-1-0716-4791-2_3"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,10,1]]},"ISBN":["9781071647905","9781071647912"],"references-count":22,"URL":"https:\/\/doi.org\/10.1007\/978-1-0716-4791-2_3","relation":{},"ISSN":["1064-3745","1940-6029"],"issn-type":[{"value":"1064-3745","type":"print"},{"value":"1940-6029","type":"electronic"}],"subject":[],"published":{"date-parts":[[2025,10,1]]},"assertion":[{"value":"1 October 2025","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}}]}}