{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,2]],"date-time":"2026-09-02T00:13:56Z","timestamp":1788308036472,"version":"build-2803163510"},"publisher-location":"New York, NY","reference-count":13,"publisher":"Springer US","isbn-type":[{"value":"9781071654996","type":"print"},{"value":"9781071655009","type":"electronic"}],"license":[{"start":{"date-parts":[[2026,1,1]],"date-time":"2026-01-01T00:00:00Z","timestamp":1767225600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2026,1,1]],"date-time":"2026-01-01T00:00:00Z","timestamp":1767225600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2026]]},"DOI":"10.1007\/978-1-0716-5500-9_5","type":"book-chapter","created":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T23:27:49Z","timestamp":1788305269000},"page":"49-57","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Core Genome Multi-Locus Sequence Typing Analyses of Leptospira spp. Using the Bacterial Isolate Genome Sequence Database"],"prefix":"10.1007","author":[{"given":"Jean-Fran\u00e7ois","family":"Mariet","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Linda","family":"Grillov\u00e1","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mathieu","family":"Picardeau","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,9,2]]},"reference":[{"key":"5_CR1","doi-asserted-by":"publisher","first-page":"e0007270","DOI":"10.1371\/journal.pntd.0007270","volume":"13","author":"AT Vincent","year":"2019","unstructured":"Vincent AT, Schiettekatte S, Goarant C, Neela VK, Bernet E, Thibeaux R et al  (2019) Revisiting the taxonomy and evolution of pathogenicity of the genus Leptospira through the prism of genomics. PLoS Negl Trop Dis 13:e0007270","journal-title":"PLoS Negl Trop Dis"},{"key":"5_CR2","doi-asserted-by":"crossref","unstructured":"Giraud-Gatineau A, Nieves C, Harrison LB, Benaroudj N, Veyrier FJ, Picardeau M (2024) Evolutionary insights into the emergence of virulent Leptospira spirochetes. PLoS Pathog 20:e1012161","DOI":"10.1371\/journal.ppat.1012161"},{"key":"5_CR3","doi-asserted-by":"publisher","first-page":"e1374","DOI":"10.1371\/journal.pntd.0001374","volume":"5","author":"A Ahmed","year":"2011","unstructured":"Ahmed A, Thaipadungpanit J, Boonsilp S, Wuthiekanun V, Nalam K, Spratt BG et al (2011) Comparison of two multilocus sequence based genotyping schemes for Leptospira species. PLoS Negl Trop Dis 5:e1374","journal-title":"PLoS Negl Trop Dis"},{"key":"5_CR4","doi-asserted-by":"publisher","first-page":"1696","DOI":"10.1128\/jcm.30.7.1696-1702.1992","volume":"30","author":"JL Herrmann","year":"1992","unstructured":"Herrmann JL, Bellenger E, Perolat P, Baranton G, Saint Girons I (1992) Pulsed-field gel electrophoresis of NotI digests of leptospiral DNA: a new rapid method of serovar identification. J Clin Microbiol 30:1696\u20131702","journal-title":"J Clin Microbiol"},{"key":"5_CR5","doi-asserted-by":"publisher","first-page":"3954","DOI":"10.1128\/JCM.00336-06","volume":"44","author":"L Sala\u00fcn","year":"2006","unstructured":"Sala\u00fcn L, M\u00e9rien F, Gurianova S, Baranton G, Picardeau M (2006) Application of multilocus variable-number tandem-repeat analysis for molecular typing of the agent of leptospirosis. J Clin Microbiol 44:3954\u20133962","journal-title":"J Clin Microbiol"},{"key":"5_CR6","doi-asserted-by":"publisher","first-page":"e0007374","DOI":"10.1371\/journal.pntd.0007374","volume":"13","author":"J Guglielmini","year":"2019","unstructured":"Guglielmini J, Bourhy P, Schiettekatte O, Zinini F, Brisse S, Picardeau M (2019) Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance. PLoS Negl Trop Dis 13:e0007374","journal-title":"PLoS Negl Trop Dis"},{"key":"5_CR7","doi-asserted-by":"publisher","DOI":"10.1186\/1471-2105-11-595","volume":"11","author":"KA Jolley","year":"2010","unstructured":"Jolley KA, Maiden MC (2010) BIGSdb: scalable analysis of bacterial genome variation at the population level. BMC Bioinform 11: 595","journal-title":"BMC Bioinform"},{"key":"5_CR8","doi-asserted-by":"publisher","first-page":"W242","DOI":"10.1093\/nar\/gkw290","volume":"44","author":"I Letunic","year":"2016","unstructured":"Letunic I, Bork P (2016) Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees. Nucleic Acids Res 44:W242\u2013W245","journal-title":"Nucleic Acids Res"},{"key":"5_CR9","doi-asserted-by":"publisher","first-page":"1395","DOI":"10.1101\/gr.232397.117","volume":"28","author":"Z Zhou","year":"2018","unstructured":"Zhou Z, Alikhan NF, Sergeant MJ, Luhmann N, Vaz C, Francisco AP et al (2018) GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens. Genome Res 28:1395\u2013404.","journal-title":"Genome Res"},{"key":"5_CR10","first-page":"406","volume":"4","author":"N Saitou","year":"1987","unstructured":"Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406\u2013425","journal-title":"Mol Biol Evol"},{"key":"5_CR11","doi-asserted-by":"publisher","first-page":"460","DOI":"10.1007\/BF02603081","volume":"28","author":"K Fukami","year":"1989","unstructured":"Fukami K, Tateno Y (1989) On the maximum likelihood method for estimating molecular trees: uniqueness of the likelihood point. J Mol Evol 28:460\u2013464","journal-title":"J Mol Evol"},{"key":"5_CR12","doi-asserted-by":"publisher","first-page":"1281","DOI":"10.1007\/s10482-017-0844-4","volume":"110","author":"SH Yoon","year":"2017","unstructured":"Yoon SH, Ha SM, Lim J, Kwon S, Chun J (2017) A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie Van Leeuwenhoek 110:1281\u20131286","journal-title":"Antonie Van Leeuwenhoek"},{"key":"5_CR13","doi-asserted-by":"publisher","first-page":"816","DOI":"10.3389\/fmicb.2018.00816","volume":"9","author":"R Thibeaux","year":"2018","unstructured":"Thibeaux R, Girault D, Bierque E, Soup\u00e9-Gilbert ME, Rettinger A, Douy\u00e8re A et al  (2018) Biodiversity of environmental Leptospira: improving identification and revisiting the diagnosis. Front Microbiol 9:816","journal-title":"Front Microbiol"}],"container-title":["Methods in Molecular Biology","Leptospira spp."],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-1-0716-5500-9_5","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T23:27:50Z","timestamp":1788305270000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-1-0716-5500-9_5"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026]]},"ISBN":["9781071654996","9781071655009"],"references-count":13,"URL":"https:\/\/doi.org\/10.1007\/978-1-0716-5500-9_5","relation":{},"ISSN":["1064-3745","1940-6029"],"issn-type":[{"value":"1064-3745","type":"print"},{"value":"1940-6029","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026]]},"assertion":[{"value":"2 September 2026","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}}]}}