{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,22]],"date-time":"2026-10-22T10:41:02Z","timestamp":1792665662620,"version":"4.5.0"},"publisher-location":"New York, NY","reference-count":16,"publisher":"Springer US","isbn-type":[{"value":"9781071656266","type":"print"},{"value":"9781071656273","type":"electronic"}],"license":[{"start":{"date-parts":[[2026,10,22]],"date-time":"2026-10-22T00:00:00Z","timestamp":1792627200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2026,10,22]],"date-time":"2026-10-22T00:00:00Z","timestamp":1792627200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2027]]},"DOI":"10.1007\/978-1-0716-5627-3_8","type":"book-chapter","created":{"date-parts":[[2026,10,22]],"date-time":"2026-10-22T10:06:24Z","timestamp":1792663584000},"page":"131-144","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Revealing High-Resolution Open Chromatin-Associated Interactions by NicE-C"],"prefix":"10.1007","author":[{"ORCID":"https:\/\/orcid.org\/0009-0002-7465-5088","authenticated-orcid":false,"given":"Tengfei","family":"Hu","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8962-6522","authenticated-orcid":false,"given":"Ran","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9578-2508","authenticated-orcid":false,"given":"Zhengyu","family":"Luo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9011-5033","authenticated-orcid":false,"given":"Xiaoyuan","family":"Song","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2026,10,22]]},"reference":[{"issue":"5950","key":"8_CR1","doi-asserted-by":"publisher","first-page":"289","DOI":"10.1126\/science.1181369","volume":"326","author":"E Lieberman-Aiden","year":"2009","unstructured":"Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A et al (2009) Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science 326(5950):289\u2013293","journal-title":"Science"},{"issue":"7398","key":"8_CR2","doi-asserted-by":"publisher","first-page":"376","DOI":"10.1038\/nature11082","volume":"485","author":"JR Dixon","year":"2012","unstructured":"Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y et al (2012) Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485(7398):376\u2013380","journal-title":"Nature"},{"issue":"7","key":"8_CR3","doi-asserted-by":"publisher","first-page":"1665","DOI":"10.1016\/j.cell.2014.11.021","volume":"159","author":"SS Rao","year":"2014","unstructured":"Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT et al (2014) A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell 159(7):1665\u20131680","journal-title":"Cell"},{"issue":"3","key":"8_CR4","doi-asserted-by":"publisher","first-page":"557","DOI":"10.1016\/j.cell.2017.09.043","volume":"171","author":"B Bonev","year":"2017","unstructured":"Bonev B, Mendelson Cohen N, Szabo Q, Fritsch L, Papadopoulos GL, Lubling Y et al (2017) Multiscale 3D genome rewiring during mouse neural development. Cell 171(3):557\u2013572.e524","journal-title":"Cell"},{"issue":"1","key":"8_CR5","doi-asserted-by":"publisher","first-page":"103","DOI":"10.1016\/j.cell.2017.09.001","volume":"171","author":"T Isoda","year":"2017","unstructured":"Isoda T, Moore AJ, He Z, Chandra V, Aida M, Denholtz M et al (2017) Non-coding transcription instructs chromatin folding and compartmentalization to dictate enhancer-promoter communication and T cell fate. Cell 171(1):103\u2013119.e118","journal-title":"Cell"},{"issue":"3","key":"8_CR6","doi-asserted-by":"publisher","first-page":"564","DOI":"10.1016\/j.cell.2018.06.014","volume":"174","author":"JT Hua","year":"2018","unstructured":"Hua JT, Ahmed M, Guo H, Zhang Y, Chen S, Soares F et al (2018) Risk SNP-mediated promoter-enhancer switching drives prostate cancer through lncRNA PCAT19. Cell 174(3):564\u2013575.e518","journal-title":"Cell"},{"issue":"3","key":"8_CR7","doi-asserted-by":"publisher","first-page":"554","DOI":"10.1016\/j.molcel.2020.03.003","volume":"78","author":"N Krietenstein","year":"2020","unstructured":"Krietenstein N, Abraham S, Venev SV, Abdennur N, Gibcus J, Hsieh TS et al (2020) Ultrastructural details of mammalian chromosome architecture. Mol Cell 78(3):554\u2013565 e557","journal-title":"Mol Cell"},{"issue":"3","key":"8_CR8","doi-asserted-by":"publisher","first-page":"539","DOI":"10.1016\/j.molcel.2020.03.002","volume":"78","author":"TS Hsieh","year":"2020","unstructured":"Hsieh TS, Cattoglio C, Slobodyanyuk E, Hansen AS, Rando OJ, Tjian R et al (2020) Resolving the 3D landscape of transcription-linked mammalian chromatin folding. Mol Cell 78(3):539\u2013553 e538","journal-title":"Mol Cell"},{"issue":"6","key":"8_CR9","doi-asserted-by":"publisher","first-page":"598","DOI":"10.1038\/ng.3286","volume":"47","author":"B Mifsud","year":"2015","unstructured":"Mifsud B, Tavares-Cadete F, Young AN, Sugar R, Schoenfelder S, Ferreira L et al (2015) Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C. Nature Genet 47(6):598\u2013606","journal-title":"Nature Genet"},{"issue":"1","key":"8_CR10","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-018-1430-4","volume":"19","author":"T Li","year":"2018","unstructured":"Li T, Jia L, Cao Y, Chen Q, Li C (2018) OCEAN-C: mapping hubs of open chromatin interactions across the genome reveals gene regulatory networks. Genome Biol 19(1):54","journal-title":"Genome Biol"},{"issue":"9","key":"8_CR11","doi-asserted-by":"publisher","first-page":"741","DOI":"10.1038\/s41592-018-0107-y","volume":"15","author":"B Lai","year":"2018","unstructured":"Lai B, Tang Q, Jin W, Hu G, Wangsa D, Cui K et al (2018) Trac-looping measures genome structure and chromatin accessibility. Nat Methods 15(9):741\u2013747","journal-title":"Nat Methods"},{"key":"8_CR12","doi-asserted-by":"crossref","unstructured":"Wei X, Xiang Y, Peters DT, Marius C, Sun T, Shan R et al (2022) HiCAR is a robust and sensitive method to analyze open-chromatin-associated genome organization. Mol Cell 82(6):1225\u20131238.e6","DOI":"10.1016\/j.molcel.2022.01.023"},{"issue":"3","key":"8_CR13","doi-asserted-by":"publisher","first-page":"534","DOI":"10.1101\/gr.275986.121","volume":"32","author":"Z Luo","year":"2022","unstructured":"Luo Z, Zhang R, Hu T, Zhu Y, Wu Y, Li W et al (2022) NicE-C efficiently reveals open chromatin-associated chromosome interactions at high resolution. Genome Res 32(3):534\u2013544","journal-title":"Genome Res"},{"issue":"1","key":"8_CR14","doi-asserted-by":"publisher","DOI":"10.1186\/s13059-017-1247-6","volume":"18","author":"VKC Ponnaluri","year":"2017","unstructured":"Ponnaluri VKC, Zhang G, Esteve PO, Spracklin G, Sian S, Xu SY et al (2017) NicE-seq: high resolution open chromatin profiling. Genome Biol 18(1):122","journal-title":"Genome Biol"},{"issue":"1","key":"8_CR15","doi-asserted-by":"publisher","DOI":"10.1186\/s13148-020-00921-6","volume":"12","author":"HG Chin","year":"2020","unstructured":"Chin HG, Sun Z, Vishnu US, Hao P, Cejas P, Spracklin G et al (2020) Universal NicE-seq for high-resolution accessible chromatin profiling for formaldehyde-fixed and FFPE tissues. Clin Epigenetics 12(1):143","journal-title":"Clin Epigenetics"},{"key":"8_CR16","doi-asserted-by":"crossref","unstructured":"Shanel G, Hsieh TS, Cattoglio C, Haham HA, Chou HJ, Li JZ et al (2025) Transcriptional programs of cell identity and p53-induced stress responses are associated with distinctive features of spatial genome organization. Nucleic Acids Res 53(13):gkaf607","DOI":"10.1093\/nar\/gkaf607"}],"container-title":["Methods in Molecular Biology","RNA-Chromatin Interactions"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-1-0716-5627-3_8","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,10,22]],"date-time":"2026-10-22T10:06:26Z","timestamp":1792663586000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/chapter\/10.1007\/978-1-0716-5627-3_8"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,10,22]]},"ISBN":["9781071656266","9781071656273"],"references-count":16,"URL":"https:\/\/doi.org\/10.1007\/978-1-0716-5627-3_8","relation":{},"ISSN":["1064-3745","1940-6029"],"issn-type":[{"value":"1064-3745","type":"print"},{"value":"1940-6029","type":"electronic"}],"subject":[],"published":{"date-parts":[[2026,10,22]]},"assertion":[{"value":"22 October 2026","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}}]}}