{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,5]],"date-time":"2024-09-05T19:10:51Z","timestamp":1725563451850},"publisher-location":"Boston, MA","reference-count":34,"publisher":"Springer US","isbn-type":[{"type":"print","value":"9781441959027"},{"type":"electronic","value":"9781441959089"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010]]},"DOI":"10.1007\/978-1-4419-5908-9_2","type":"book-chapter","created":{"date-parts":[[2010,8,30]],"date-time":"2010-08-30T22:16:28Z","timestamp":1283206588000},"page":"29-65","source":"Crossref","is-referenced-by-count":0,"title":["Semantic Disclosure in an e-Science Environment"],"prefix":"10.1007","author":[{"given":"M. Scott","family":"Marshall","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marco","family":"Roos","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Edgar","family":"Meij","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sophia","family":"Katrenko","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Willem Robert","family":"van Hage","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Pieter W.","family":"Adriaans","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2010,6,17]]},"reference":[{"key":"2_CR1","doi-asserted-by":"publisher","first-page":"1099","DOI":"10.1038\/nbt1139","volume":"23","author":"X. Wang","year":"2005","unstructured":"Wang, X., Gorlitsky, R., Almeida, J.S.: From XML to RDF: How semantic web technologies will change the design of \u2018omic\u2019 standards. Nature Biotechnology 23 (2005) 1099\u20131103","journal-title":"Nature Biotechnology"},{"key":"2_CR2","doi-asserted-by":"crossref","unstructured":"Allemang, D., Hendler, J.: Semantic Web for the Working Ontologist: Effective Modeling in RDFS and OWL Morgan Kaufmann (2008)","DOI":"10.1016\/B978-0-12-373556-0.00002-2"},{"key":"2_CR3","doi-asserted-by":"crossref","first-page":"678","DOI":"10.1038\/nrg2414","volume":"9","author":"L.D. Stein","year":"2008","unstructured":"Stein, L.D.: Towards a cyberinfrastructure for the biological sciences: Progress, visions and challenges. Nature Reviews 9 (2008) 678\u2013688","journal-title":"Nature Reviews"},{"key":"2_CR4","doi-asserted-by":"publisher","first-page":"D2","DOI":"10.1093\/nar\/gkm1037","volume":"36","author":"M.Y. Galperin","year":"2008","unstructured":"Galperin, M.Y.: The molecular biology database collection: 2008 update. Nucleic Acids Research 36 (2008) D2\u2013D4","journal-title":"Nucleic Acids Research"},{"issue":"3","key":"2_CR5","doi-asserted-by":"publisher","first-page":"S2","DOI":"10.1186\/1471-2105-8-S3-S2","volume":"8","author":"A. Ruttenberg","year":"2007","unstructured":"Ruttenberg, A., Clark, T., Bug, W., Samwald, M., Bodenreider, O., Chen, H., Doherty, D., Forsberg, K., Gao, Y., Kashyap, V., Kinoshita, J., Luciano, J., Marshall, M.S., Ogbuji, C., Rees, J., Stephens, S., Wong, G.T., Wu, E., Zaccagnini, D., Hongsermeier, T., Neumann, E., Herman, I., Cheung, K.H.: Advancing translational research with the semantic web. BMC Bioinformatics 8(3) (2007) S2","journal-title":"BMC Bioinformatics"},{"key":"2_CR6","unstructured":"Marshall, M.S., Prud\u2019hommeaux, E.: A Prototype Knowledge Base for the Life Sciences (W3C Interest Group Note). 2008 (2008)"},{"key":"2_CR7","unstructured":"Samwald, M., Cheung, K.: Experiences with the conversion of SenseLab databases to RDF\/OWL (W3C Interest Group Note). Vol. 2008 (2008)"},{"key":"2_CR8","doi-asserted-by":"publisher","first-page":"193","DOI":"10.1093\/bib\/bbp004","volume":"10","author":"A. Ruttenberg","year":"2009","unstructured":"Ruttenberg, A., Rees, J., Samwald, M., Marshall, M.S.: Life sciences on the semantic web: The neurocommons and beyond. Briefings in Bioinformatics 10 (2009) 193\u2013204","journal-title":"Briefings in Bioinformatics"},{"key":"2_CR9","first-page":"54","volume-title":"Sesame: A Generic Architecture for Storing and Querying RDF and RDF Schema. The Semantic Web \u2013 ISWC 2002: First International Semantic Web Conference, Vol. 2342\/2002","author":"J. Broekstra","year":"2002","unstructured":"Broekstra, J., Kampman, A., van Harmelen, F.: Sesame: A Generic Architecture for Storing and Querying RDF and RDF Schema. The Semantic Web \u2013 ISWC 2002: First International Semantic Web Conference, Vol. 2342\/2002. Springer, Berlin, Heidelberg, Sardinia, Italy (2002) 54"},{"key":"2_CR10","unstructured":"LingPipe 4.0.0. http:\/\/alias-i.com\/lingpipe (accessed October 1, 2008)"},{"key":"2_CR11","volume-title":"Data Mining: Practical machine learning tools and techniques","author":"I.H. Witten","year":"2005","unstructured":"Witten, I.H., Frank, E.: Data Mining: Practical machine learning tools and techniques. Morgan Kaufmann, San Francisco (2005)"},{"key":"2_CR12","unstructured":"Katrenko, S., Adriaans, P.: Using Semi-Supervised Techniques to Detect Gene Mentions. Second BioCreative Challenge Workshop (2007)"},{"key":"2_CR13","unstructured":"Katrenko, S., Adriaans, P.: Learning Relations from Biomedical Corpora Using Dependency Trees. KDECB (Knowledge Discovery and Emergent Complexity in BioInformatics), Vol. 4366 (2006)"},{"key":"2_CR14","doi-asserted-by":"crossref","unstructured":"Koenderink, N.J.J.P., Top, J.L., van Vliet, L.J.: Expert-based ontology construction: A case-study in horticulture. In: Proceedings of the 5th TAKMA Workshop at the DEXA Conference (2005) 383\u2013387","DOI":"10.1109\/DEXA.2005.87"},{"key":"2_CR15","doi-asserted-by":"publisher","first-page":"547","DOI":"10.1093\/chemse\/bji048","volume":"30","author":"S. Rodgers","year":"2005","unstructured":"Rodgers, S., Busch, J., Peters, H., Christ-Hazelhof, E.: Building a tree of knowledge: Analysis of bitter molecules. Chemical Senses 30 (2005) 547\u2013557","journal-title":"Chemical Senses"},{"key":"2_CR16","doi-asserted-by":"publisher","first-page":"569","DOI":"10.1021\/ci0504418","volume":"46","author":"S. Rodgers","year":"2006","unstructured":"Rodgers, S., Glen, R.C., Bender, A.: Characterizing bitterness: Identification of key structural features and development of a classification model. Journal of Chemical Information and Modeling 46 (2006) 569\u2013576","journal-title":"Journal of Chemical Information and Modeling"},{"issue":"2","key":"2_CR17","doi-asserted-by":"publisher","first-page":"S167","DOI":"10.1259\/bjr\/33553595","volume":"77","author":"S.M. Smith","year":"2004","unstructured":"Smith, S.M.: Overview of fMRI analysis. The British Journal of Radiology 77(2) (2004) S167\u2013S175","journal-title":"The British Journal of Radiology"},{"key":"2_CR18","doi-asserted-by":"crossref","unstructured":"Olabarriaga, S.D., Boer, P.T.d., Maheshwari, K., Belloum, A., Snel, J.G., Nederveen, A.J., Bouwhuis, M.: Virtual lab for fMRI: bridging the usability gap. In: Proceedings of the 2nd IEEE International Conference on e-Science and Grid Computing, Amsterdam, Netherlands IEEE Computer Society, Los Alamitos, CA (2006)","DOI":"10.1109\/E-SCIENCE.2006.261137"},{"key":"2_CR19","doi-asserted-by":"crossref","first-page":"996","DOI":"10.1101\/gr.229102","volume":"12","author":"W.J. Kent","year":"2002","unstructured":"Kent, W.J., Sugnet, C.W., Furey, T.S., Roskin, K.M., Pringle, T.H., Zahler, A.M., Haussler, D.: The human genome browser at UCSC. Genome Res 12 (2002) 996\u20131006","journal-title":"Genome Res"},{"key":"2_CR20","doi-asserted-by":"publisher","first-page":"D663","DOI":"10.1093\/nar\/gkl1017","volume":"35","author":"D.J. Thomas","year":"2007","unstructured":"Thomas, D.J., Rosenbloom, K.R., Clawson, H., Hinrichs, A.S., Trumbower, H., Raney, B.J., Karolchik, D., Barber, G.P., Harte, R.A., Hillman-Jackson, J., Kuhn, R.M., Rhead, B.L., Smith, K.E., Thakkapallayil, A., Zweig, A.S., Haussler, D., Kent, W.J.: The ENCODE project at UC Santa Cruz. Nucleic Acids Research 35 (2007) D663\u2013667","journal-title":"Nucleic Acids Research"},{"issue":"5","key":"2_CR21","doi-asserted-by":"crossref","first-page":"706","DOI":"10.1016\/j.jbi.2008.03.004","volume":"41","author":"F. Belleau","year":"2008","unstructured":"Belleau, F., Nolin, M.A., Tourigny, N., Rigault, P., Morissette, J.: Bio2RDF: Towards a mashup to build bioinformatics knowledge systems. Journal of Biomedical Informatics 41(5) (2008) 706\u2013716","journal-title":"Journal of Biomedical Informatics"},{"issue":"1","key":"2_CR22","doi-asserted-by":"publisher","first-page":"i85","DOI":"10.1093\/bioinformatics\/bti1026","volume":"21","author":"K.H. Cheung","year":"2005","unstructured":"Cheung, K.H., Yip, K.Y., Smith, A., Deknikker, R., Masiar, A., Gerstein, M.: YeastHub: a semantic web use case for integrating data in the life sciences domain. Bioinformatics 21(1) (2005) i85\u2013i96","journal-title":"Bioinformatics"},{"key":"2_CR23","doi-asserted-by":"publisher","first-page":"286","DOI":"10.1504\/IJBRA.2007.015004","volume":"3","author":"L. Dhanapalan","year":"2007","unstructured":"Dhanapalan, L., Chen, J.Y.: A case study of integrating protein interaction data using semantic web technology. International Journal of Bioinformatics Research and Application 3 (2007) 286\u2013302","journal-title":"International Journal of Bioinformatics Research and Application"},{"key":"2_CR24","unstructured":"Lam, H.Y., Marenco, L., Shepherd, G.M., Miller, P.L., Cheung, K.H.: Using web ontology language to integrate heterogeneous databases in the neurosciences. AMIA Annual Symposium Proceedings, Washington, DC (2006) 464\u2013468"},{"key":"2_CR25","unstructured":"Marshall, M., Post, L., Roos, M., Breit, T.: Using semantic web tools to integrate experimental measurement data on our own terms. On the move to meaningful internet systems 2006: OTM 2006 Workshops (2006) 679\u2013688"},{"key":"2_CR26","doi-asserted-by":"publisher","first-page":"3080","DOI":"10.1093\/bioinformatics\/btm461","volume":"23","author":"L.J. Post","year":"2007","unstructured":"Post, L.J., Roos, M., Marshall, M.S., van Driel, R., Breit, T.M.: A semantic web approach applied to integrative bioinformatics experimentation: A biological use case with genomics data. Bioinformatics 23 (2007) 3080\u20133087","journal-title":"Bioinformatics"},{"key":"2_CR27","doi-asserted-by":"publisher","first-page":"77","DOI":"10.1145\/1409360.1409380","volume":"51","author":"P.A. Boncz","year":"2008","unstructured":"Boncz, P.A., Kersten, M.L., Manegold, S.: Breaking the memory wall in MonetDB. Commun. ACM 51 (2008) 77\u201385","journal-title":"ACM"},{"key":"2_CR28","doi-asserted-by":"publisher","first-page":"23","DOI":"10.1002\/jcb.20957","volume":"99","author":"P.J. Verschure","year":"2006","unstructured":"Verschure, P.J.: Chromosome organization and gene control: It is difficult to see the picture when you are inside the frame. Journal of Cellular Biochemistry 99 (2006) 23\u201334","journal-title":"Journal of Cellular Biochemistry"},{"key":"2_CR29","doi-asserted-by":"publisher","first-page":"W729","DOI":"10.1093\/nar\/gkl320","volume":"34","author":"D. Hull","year":"2006","unstructured":"Hull, D., Wolstencroft, K., Stevens, R., Goble, C., Pocock, M.R., Li, P., Oinn, T.: Taverna: a tool for building and running workflows of services. Nucleic Acids Research 34 (2006) W729\u2013W732","journal-title":"Nucleic Acids Research"},{"key":"2_CR30","doi-asserted-by":"crossref","unstructured":"Cheung, K.-H., Frost, H.R., Marshall, M.S., Prud\u2019hommeaux, E., Samwald, M., Zhao, J., Paschke, A.: A journey to semantic web query federation in life sciences. BMC Bioinformatics 10 (2009) S10","DOI":"10.1186\/1471-2105-10-S10-S10"},{"key":"2_CR31","doi-asserted-by":"publisher","first-page":"D31","DOI":"10.1093\/nar\/gkh127","volume":"32","author":"S. Miyazaki","year":"2004","unstructured":"Miyazaki, S., Sugawara, H., Ikeo, K., Gojobori, T., Tateno, Y.: DDBJ in the stream of various biological data. Nucleic Acids Research 32 (2004) D31\u201334","journal-title":"Nucleic Acids Research"},{"key":"2_CR32","doi-asserted-by":"crossref","unstructured":"De Roure, D., Goble, C., Stevens, R.: The design and realisation of the myexperiment virtual research environment for social sharing of workflows. Future Generation Computer Systems (2008) 2009 May, 25(5)","DOI":"10.1016\/j.future.2008.06.010"},{"key":"2_CR33","unstructured":"Goble, C., De Roure, D.: Curating scientific web services and workflows. Educause Review 43 (2008)"},{"key":"2_CR34","doi-asserted-by":"crossref","unstructured":"Missier, P., Belhajjame, K., Zhao, J., Goble, C.: Data lineage model for Taverna workflows with lightweight annotation requirements. IPAW\u201908, Salt Lake City, Utah (2008)","DOI":"10.1007\/978-3-540-89965-5_4"}],"container-title":["Annals of Information Systems","Semantic e-Science"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-1-4419-5908-9_2","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2019,6,2]],"date-time":"2019-06-02T16:48:23Z","timestamp":1559494103000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-1-4419-5908-9_2"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010]]},"ISBN":["9781441959027","9781441959089"],"references-count":34,"URL":"https:\/\/doi.org\/10.1007\/978-1-4419-5908-9_2","relation":{},"ISSN":["1934-3221","1934-3213"],"issn-type":[{"type":"print","value":"1934-3221"},{"type":"electronic","value":"1934-3213"}],"subject":[],"published":{"date-parts":[[2010]]}}}