{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,4]],"date-time":"2026-04-04T10:11:52Z","timestamp":1775297512949,"version":"3.50.1"},"publisher-location":"New York, NY","reference-count":15,"publisher":"Springer New York","isbn-type":[{"value":"9781461482666","type":"print"},{"value":"9781461482659","type":"electronic"}],"license":[{"start":{"date-parts":[[2018,1,1]],"date-time":"2018-01-01T00:00:00Z","timestamp":1514764800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018]]},"DOI":"10.1007\/978-1-4614-8265-9_630","type":"book-chapter","created":{"date-parts":[[2018,12,6]],"date-time":"2018-12-06T08:04:19Z","timestamp":1544083459000},"page":"2995-2999","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Query Languages and Evaluation Techniques for Biological Sequence Data"],"prefix":"10.1007","author":[{"given":"Sandeep","family":"Tata","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jignesh M.","family":"Patel","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2018,12,7]]},"reference":[{"issue":"3","key":"630_CR17137","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","volume":"215","author":"SF Altschul","year":"1990","unstructured":"Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol. 1990;215(3):403\u201310.","journal-title":"J Mol Biol"},{"issue":"3","key":"630_CR17138","first-page":"12","volume":"27","author":"A Barbara","year":"2004","unstructured":"Barbara A, Eckman AK. Querying BLAST within a data federation. Q Bull IEEE TC Data Eng. 2004;27(3):12\u20139.","journal-title":"Q Bull IEEE TC Data Eng"},{"issue":"3","key":"630_CR17139","first-page":"345","volume":"5","author":"MO Dayhoff","year":"1978","unstructured":"Dayhoff MO, Schwartz RM, Orcutt BC. A model of evolutionary change in proteins. Atlas Protein Seq Struct. 1978;5(3):345\u201352.","journal-title":"Atlas Protein Seq Struct"},{"key":"630_CR17140","unstructured":"Hammer J, Schneider M. Genomics algebra: a new, integrating data model, language, and tool for processing and querying genomic information. In: Proceedings of the 1st Biennial Conference on Innovative Data Systems Research; 2003. p. 176\u201387."},{"issue":"22","key":"630_CR17141","doi-asserted-by":"publisher","first-page":"10915","DOI":"10.1073\/pnas.89.22.10915","volume":"89","author":"S Henikoff","year":"1992","unstructured":"Henikoff S, Henikoff J. Amino acid substitution matrices from protein blocks. In Proc Natl Acad Sci. 1992;89(22):10915\u20139.","journal-title":"In Proc Natl Acad Sci"},{"key":"630_CR17142","series-title":"LNCS","doi-asserted-by":"publisher","first-page":"284","DOI":"10.1007\/11530084_23","volume-title":"In Data Integration in the Life Sciences (DILS)","author":"R-L Hsiao","year":"2005","unstructured":"Hsiao R-L, Stott Parker Jr D, Yang H-C. Support for BioIndexing in BLASTgres. In: In Data Integration in the Life Sciences (DILS), LNCS, vol. 3615. Berlin: Springer; 2005. p. 284\u20137."},{"key":"630_CR17143","unstructured":"Mao R, Weijia X, Neha S, Miranker DP. An assessment of a metric space database index to support sequence homology. In: Proceedings of the IEEE 3rd International Symposium on Bioinformatics and Bioengineering; 2003. p. 375\u201382."},{"issue":"8","key":"630_CR17144","doi-asserted-by":"publisher","first-page":"2444","DOI":"10.1073\/pnas.85.8.2444","volume":"85","author":"WR Pearson","year":"1988","unstructured":"Pearson WR, Lipman DJ. Improved tools for biological sequence comparison. Proc Natl Acad Sci. 1988;85(8):2444\u20138.","journal-title":"Proc Natl Acad Sci"},{"issue":"1","key":"630_CR17145","doi-asserted-by":"publisher","first-page":"195","DOI":"10.1016\/0022-2836(81)90087-5","volume":"147","author":"TF Smith","year":"1981","unstructured":"Smith TF, Waterman MS. Identification of common molecular subsequences. J Mol Biol. 1981;147(1):195\u20137.","journal-title":"J Mol Biol"},{"issue":"Database issue","key":"630_CR17146","doi-asserted-by":"publisher","first-page":"D675","DOI":"10.1093\/nar\/gki114","volume":"33","author":"S. M. Stephens","year":"2004","unstructured":"Stephens S, Chen JY, Davidson MG, Thomas S, Trute BM. Oracle database 10\u00a0g: a platform for BLAST search and regular expression pattern matching in life sciences. Nucleic Acids Res. 2005;33(Database-Issue):675\u20139.","journal-title":"Nucleic Acids Research"},{"issue":"3","key":"630_CR17147","first-page":"20","volume":"27","author":"S Stephens","year":"2004","unstructured":"Stephens S, Chen JY, Thomas S. ODM BLAST: sequence homology search in the RDBMS. Q Bull IEEE TC Data Eng. 2004;27(3):20\u20133.","journal-title":"Q Bull IEEE TC Data Eng"},{"key":"630_CR17148","unstructured":"Tata S, Lang W, Patel JM. Periscope\/SQ: interactive exploration of biological sequence databases. In: Proceedings of the 33rd International Conference on Very Large Data Bases; 2007. p. 1406\u20139."},{"key":"630_CR17149","doi-asserted-by":"crossref","unstructured":"Tata S, Patel JM. PiQA: an algebra for querying protein data sets. In: Proceedings of the 15th International Conference on Scientific and Statistical Database Management; 2003. p. 141\u201350.","DOI":"10.1109\/SSDM.2003.1214975"},{"key":"630_CR17150","doi-asserted-by":"crossref","unstructured":"Tata S, Patel JM, Friedman JS, Swaroop A. Declarative querying for biological sequences. In: Proceedings of the 22nd International Conference on Data Engineering; 2006. p. 87.","DOI":"10.1109\/ICDE.2006.47"},{"key":"630_CR17151","doi-asserted-by":"crossref","unstructured":"Weiner P. Linear pattern matching algorithm. In: Proceedings of the 14th Annual IEEE Symposium on Switching and Automata Theory; 1973. p. 1\u201311.","DOI":"10.1109\/SWAT.1973.13"}],"container-title":["Encyclopedia of Database Systems"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-1-4614-8265-9_630","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,4,4]],"date-time":"2026-04-04T09:42:45Z","timestamp":1775295765000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-1-4614-8265-9_630"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018]]},"ISBN":["9781461482666","9781461482659"],"references-count":15,"URL":"https:\/\/doi.org\/10.1007\/978-1-4614-8265-9_630","relation":{},"subject":[],"published":{"date-parts":[[2018]]},"assertion":[{"value":"7 December 2018","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}}]}}