{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,11,12]],"date-time":"2026-11-12T09:13:59Z","timestamp":1794474839373,"version":"4.9.1"},"publisher-location":"New York, NY","reference-count":33,"publisher":"Springer New York","isbn-type":[{"value":"9781493907021","type":"print"},{"value":"9781493907038","type":"electronic"}],"license":[{"start":{"date-parts":[[2014,1,1]],"date-time":"2014-01-01T00:00:00Z","timestamp":1388534400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2014,1,1]],"date-time":"2014-01-01T00:00:00Z","timestamp":1388534400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014]]},"DOI":"10.1007\/978-1-4939-0703-8_19","type":"book-chapter","created":{"date-parts":[[2014,5,3]],"date-time":"2014-05-03T05:05:16Z","timestamp":1399093516000},"page":"223-232","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":1,"title":["Genome Sequencing of Listeria monocytogenes"],"prefix":"10.1007","author":[{"given":"Stephan","family":"Schmitz-Esser","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Martin","family":"Wagner","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2014,4,11]]},"reference":[{"key":"19_CR1","doi-asserted-by":"publisher","first-page":"16","DOI":"10.1111\/j.1469-0691.2009.03109.x","volume":"16","author":"F Allerberger","year":"2010","unstructured":"Allerberger F, Wagner M (2010) Listeriosis: a resurgent foodborne infection. Clin Microbiol Infect 16:16\u201323","journal-title":"Clin Microbiol Infect"},{"key":"19_CR2","doi-asserted-by":"publisher","first-page":"1236","DOI":"10.1016\/j.micinf.2007.05.011","volume":"9","author":"B Swaminathan","year":"2007","unstructured":"Swaminathan B, Gerner-Smidt P (2007) The epidemiology of human listeriosis. Microbes Infect 9:1236\u20131243","journal-title":"Microbes Infect"},{"key":"19_CR3","doi-asserted-by":"publisher","first-page":"404","DOI":"10.1056\/NEJM198502143120704","volume":"312","author":"DW Fleming","year":"1985","unstructured":"Fleming DW, Cochi SL, MacDonald KL, Brondum J, Hayes PS, Plikaytis BD, Holmes MB, Audurier A, Broome CV, Reingold AL (1985) Pasteurized milk as a vehicle of infection in an outbreak of listeriosis. N Engl J Med 312:404\u2013407","journal-title":"N Engl J Med"},{"key":"19_CR4","doi-asserted-by":"publisher","first-page":"203","DOI":"10.1056\/NEJM198301273080407","volume":"308","author":"WF Schlech 3rd","year":"1983","unstructured":"Schlech WF 3rd, Lavigne PM, Bortolussi RA, Allen AC, Haldane EV, Wort AJ, Hightower AW, Johnson SE, King SH, Nicholls ES, Broome CV (1983) Epidemic listeriosis\u2014evidence for transmission by food. N Engl J Med 308:203\u2013206","journal-title":"N Engl J Med"},{"key":"19_CR5","doi-asserted-by":"publisher","first-page":"19484","DOI":"10.1073\/pnas.1112371108","volume":"108","author":"P Cossart","year":"2011","unstructured":"Cossart P (2011) Illuminating the landscape of host-pathogen interactions with the bacterium Listeria monocytogenes. Proc Natl Acad Sci USA 108:19484\u201319491","journal-title":"Proc Natl Acad Sci USA"},{"key":"19_CR6","doi-asserted-by":"publisher","first-page":"423","DOI":"10.1038\/nrmicro1413","volume":"4","author":"M Hamon","year":"2006","unstructured":"Hamon M, Bierne H, Cossart P (2006) Listeria monocytogenes: a multifaceted model. Nat Rev Microbiol 4:423\u2013434","journal-title":"Nat Rev Microbiol"},{"key":"19_CR7","doi-asserted-by":"publisher","first-page":"319","DOI":"10.1089\/fpd.2006.3.319","volume":"3","author":"R Ivanek","year":"2006","unstructured":"Ivanek R, Grohn YT, Wiedmann M (2006) Listeria monocytogenes in multiple habitats and host populations: review of available data for mathematical modeling. Foodborne Pathog Dis 3:319\u2013336","journal-title":"Foodborne Pathog Dis"},{"key":"19_CR8","first-page":"21","volume-title":"Listeria, listeriosis and food safety","author":"BD Sauders","year":"2007","unstructured":"Sauders BD, Wiedmann M (2007) Ecology of Listeria species and L. monocytogenes in the natural environment. In: Ryser ET, Marth EH (eds) Listeria, listeriosis and food safety. CRC Press, Boca Raton, pp 21\u201353"},{"key":"19_CR9","doi-asserted-by":"crossref","first-page":"849","DOI":"10.1126\/science.1063447","volume":"294","author":"P Glaser","year":"2001","unstructured":"Glaser P, Frangeul L, Buchrieser C, Rusniok C, Amend A, Baquero F, Berche P, Bloecker H, Brandt P, Chakraborty T, Charbit A, Chetouani F, Couv\u00e9 E, de Daruvar A, Dehoux P, Domann E, Dom\u00ednguez-Bernal G, Duchaud E, Durant L, Dussurget O, Entian KD, Fsihi H, Garc\u00eda-del-Portillo F, Garrido P, Gautier L, Goebel W, G\u00f3mez-L\u00f3pez N, Hain T, Hauf J, Jackson D, Jones LM, Kaerst U, Kreft J, Kuhn M, Kunst F, Kurapkat G, Madueno E, Maitournam A, Vicente JM, Ng E, Nedjari H, Nordsiek G, Novella S, de Pablos B, P\u00e9rez-Diaz JC, Purcell R, Remmel B, Rose M, Schlueter T, Simoes N, Tierrez A, V\u00e1zquez-Boland JA, Voss H, Wehland J, Cossart P (2001) Comparative genomics of Listeria species. Science 294:849\u2013852","journal-title":"Science"},{"key":"19_CR10","doi-asserted-by":"publisher","first-page":"D571","DOI":"10.1093\/nar\/gkr1100","volume":"40","author":"I Pagani","year":"2012","unstructured":"Pagani I, Liolios K, Jansson J, Chen IMA, Smirnova T, Nosrat B, Markowitz VM, Kyrpides NC (2012) The Genomes OnLine Database (GOLD) v. 4: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res 40:D571\u2013D579","journal-title":"Nucleic Acids Res"},{"key":"19_CR11","doi-asserted-by":"crossref","unstructured":"Wilson K (2001) Preparation of genomic DNA from bacteria. Curr Protoc Mol Biol Chapter 2:Unit 2.4","DOI":"10.1002\/0471142727.mb0204s56"},{"key":"19_CR12","doi-asserted-by":"publisher","first-page":"599","DOI":"10.1038\/nrmicro2850","volume":"10","author":"NJ Loman","year":"2012","unstructured":"Loman NJ, Constantinidou C, Chan JZ, Halachev M, Sergeant M, Penn CW, Robinson ER, Pallen MJ (2012) High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity. Nat Rev Microbiol 10:599\u2013606","journal-title":"Nat Rev Microbiol"},{"key":"19_CR13","doi-asserted-by":"crossref","first-page":"287","DOI":"10.1038\/nrmicro2088","volume":"7","author":"D MacLean","year":"2009","unstructured":"MacLean D, Jones JD, Studholme DJ (2009) Application of \u2018next-generation\u2019 sequencing technologies to microbial genetics. Nat Rev Microbiol 7:287\u2013296","journal-title":"Nat Rev Microbiol"},{"key":"19_CR14","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1038\/nrg2626","volume":"11","author":"ML Metzker","year":"2010","unstructured":"Metzker ML (2010) Sequencing technologies\u2014the next generation. Nat Rev Genet 11:31\u201346","journal-title":"Nat Rev Genet"},{"key":"19_CR15","doi-asserted-by":"publisher","first-page":"701","DOI":"10.1038\/nbt.2288","volume":"30","author":"A Bashir","year":"2012","unstructured":"Bashir A, Klammer AA, Robins WP, Chin CS, Webster D, Paxinos E, Hsu D, Ashby M, Wang S, Peluso P, Sebra R, Sorenson J, Bullard J, Yen J, Valdovino M, Mollova E, Luong K, Lin S, LaMay B, Joshi A, Rowe L, Frace M, Tarr CL, Turnsek M, Davis BM, Kasarskis A, Mekalanos JJ, Waldor MK, Schadt EE (2012) A hybrid approach for the automated finishing of bacterial genomes. Nat Biotechnol 30:701\u2013707","journal-title":"Nat Biotechnol"},{"key":"19_CR16","doi-asserted-by":"publisher","first-page":"2270","DOI":"10.1101\/gr.141515.112","volume":"22","author":"FJ Ribeiro","year":"2012","unstructured":"Ribeiro FJ, Przybylski D, Yin S, Sharpe T, Gnerre S, Abouelleil A, Berlin AM, Montmayeur A, Shea TP, Walker BJ, Young SK, Russ C, Nusbaum C, MacCallum I, Jaffe DB (2012) Finished bacterial genomes from shotgun sequence data. Genome Res 22:2270\u20132277","journal-title":"Genome Res"},{"key":"19_CR17","doi-asserted-by":"publisher","first-page":"157","DOI":"10.1038\/nrg3367","volume":"14","author":"N Nagarajan","year":"2013","unstructured":"Nagarajan N, Pop M (2013) Sequence assembly demystified. Nat Rev Genet 14:157\u2013167","journal-title":"Nat Rev Genet"},{"key":"19_CR18","doi-asserted-by":"publisher","first-page":"401","DOI":"10.1093\/bioinformatics\/btp666","volume":"26","author":"I Milne","year":"2010","unstructured":"Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F, Marshall D (2010) Tablet\u2014next generation sequence assembly visualization. Bioinformatics 26:401\u2013402","journal-title":"Bioinformatics"},{"key":"19_CR19","doi-asserted-by":"publisher","first-page":"e11147","DOI":"10.1371\/journal.pone.0011147","volume":"5","author":"AE Darling","year":"2010","unstructured":"Darling AE, Mau B, Perna NT (2010) progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 5:e11147","journal-title":"PLoS One"},{"key":"19_CR20","doi-asserted-by":"publisher","first-page":"334","DOI":"10.1093\/bioinformatics\/btq665","volume":"27","author":"SV Angiuoli","year":"2011","unstructured":"Angiuoli SV, Salzberg SL (2011) Mugsy: fast multiple alignment of closely related whole genomes. Bioinformatics 27:334\u2013342","journal-title":"Bioinformatics"},{"key":"19_CR21","doi-asserted-by":"publisher","first-page":"R55","DOI":"10.1186\/gb-2008-9-3-r55","volume":"9","author":"AM Phillippy","year":"2008","unstructured":"Phillippy AM, Schatz MC, Pop M (2008) Genome assembly forensics: finding the elusive mis-assembly. Genome Biol 9:R55","journal-title":"Genome Biol"},{"key":"19_CR22","doi-asserted-by":"publisher","first-page":"bap021","DOI":"10.1093\/database\/bap021","volume":"2009","author":"D Vallenet","year":"2009","unstructured":"Vallenet D, Engelen S, Mornico D, Cruveiller S, Fleury L, Lajus A, Rouy Z, Roche D, Salvignol G, Scarpelli C, M\u00e9digue C (2009) MicroScope: a platform for microbial genome annotation and comparative genomics. Database (Oxford) 2009:bap021. doi:10.1093\/database\/bap021","journal-title":"Database (Oxford)"},{"key":"19_CR23","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1186\/1471-2164-9-75","volume":"9","author":"RK Aziz","year":"2008","unstructured":"Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O (2008) The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75","journal-title":"BMC Genomics"},{"key":"19_CR24","doi-asserted-by":"publisher","first-page":"2271","DOI":"10.1093\/bioinformatics\/btp393","volume":"25","author":"VM Markowitz","year":"2009","unstructured":"Markowitz VM, Mavromatis K, Ivanova NN, Chen IMA, Chu KC, Kyrpides NC (2009) IMG ER: a system for microbial genome annotation expert review and curation. Bioinformatics 25:2271\u20132278","journal-title":"Bioinformatics"},{"key":"19_CR25","doi-asserted-by":"publisher","first-page":"2187","DOI":"10.1093\/nar\/gkg312","volume":"31","author":"F Meyer","year":"2003","unstructured":"Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A (2003) GenDB\u2014an open source genome annotation system for prokaryote genomes. Nucleic Acids Res 31:2187\u20132195","journal-title":"Nucleic Acids Res"},{"key":"19_CR26","doi-asserted-by":"publisher","first-page":"R56","DOI":"10.1186\/gb-2012-13-6-r56","volume":"13","author":"M Boetzer","year":"2012","unstructured":"Boetzer M, Pirovano W (2012) Toward almost closed genomes with GapFiller. Genome Biol 13:R56","journal-title":"Genome Biol"},{"key":"19_CR27","doi-asserted-by":"publisher","first-page":"242","DOI":"10.1186\/1471-2164-11-242","volume":"11","author":"N Nagarajan","year":"2010","unstructured":"Nagarajan N, Cook C, Di Bonaventura M, Ge H, Richards A, Bishop-Lilly KA, DeSalle R, Read TD, Pop M (2010) Finishing genomes with limited resources: lessons from an ensemble of microbial genomes. BMC Genomics 11:242","journal-title":"BMC Genomics"},{"key":"19_CR28","doi-asserted-by":"publisher","first-page":"11","DOI":"10.1186\/1751-0473-6-11","volume":"6","author":"M Galardini","year":"2011","unstructured":"Galardini M, Biondi EG, Bazzicalupo M, Mengoni A (2011) CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes. Source Code Biol Med 6:11","journal-title":"Source Code Biol Med"},{"key":"19_CR29","doi-asserted-by":"publisher","first-page":"202","DOI":"10.1186\/1471-2164-13-202","volume":"13","author":"JR Grant","year":"2012","unstructured":"Grant JR, Arantes AS, Stothard P (2012) Comparing thousands of circular genomes using the CGView comparison tool. BMC Genomics 13:202","journal-title":"BMC Genomics"},{"key":"19_CR30","doi-asserted-by":"publisher","first-page":"402","DOI":"10.1186\/1471-2164-12-402","volume":"12","author":"NF Alikhan","year":"2011","unstructured":"Alikhan NF, Petty NK, Ben Zakour NL, Beatson SA (2011) BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons. BMC Genomics 12:402","journal-title":"BMC Genomics"},{"key":"19_CR31","doi-asserted-by":"publisher","first-page":"1639","DOI":"10.1101\/gr.092759.109","volume":"19","author":"M Krzywinski","year":"2009","unstructured":"Krzywinski M, Schlein J, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA (2009) Circos: an information aesthetic for comparative genomics. Genome Res 19:1639\u20131645","journal-title":"Genome Res"},{"key":"19_CR32","doi-asserted-by":"publisher","first-page":"3422","DOI":"10.1093\/bioinformatics\/bti553","volume":"21","author":"TJ Carver","year":"2005","unstructured":"Carver TJ, Rutherford KM, Berriman M, Rajandream MA, Barrell BG, Parkhill J (2005) ACT: the Artemis comparison tool. Bioinformatics 21:3422\u20133423","journal-title":"Bioinformatics"},{"key":"19_CR33","doi-asserted-by":"publisher","first-page":"541","DOI":"10.1038\/nbt1360","volume":"26","author":"D Field","year":"2008","unstructured":"Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiouli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, Cochrane G, Cole J, Dawyndt P, De Vos P, DePamphilis C, Edwards R, Faruque N, Feldman R, Gilbert J, Gilna P, Glockner FO, Goldstein P, Guralnick R, Haft D, Hancock D, Hermjakob H, Hertz-Fowler C, Hugenholtz P, Joint I, Kegan L, Kane M, Kennedy J, Kowalchuk G, Kottmann R, Kolker E, Kravitz S, Kyrpides N, Leebens-Mack J, Lewis SE, Li K, Lister AL, Lord P, Maltsev N, Markowitz V, Martiny J, Methe B, Mizrachi I, Moxon R, Nelson K, Parkhill J, Proctor L, White O, Sansone SA, Spiers A, Stevens R, Swift P, Taylor C, Tateno Y, Tett A, Turner S, Ussery D, Vaughan B, Ward N, Whetzel T, San Gil I, Wilson G, Wipat A (2008) The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol 26:541\u2013547","journal-title":"Nat Biotechnol"}],"container-title":["Methods in Molecular Biology","Listeria monocytogenes"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-1-4939-0703-8_19","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,19]],"date-time":"2023-02-19T19:39:54Z","timestamp":1676835594000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-1-4939-0703-8_19"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014]]},"ISBN":["9781493907021","9781493907038"],"references-count":33,"URL":"https:\/\/doi.org\/10.1007\/978-1-4939-0703-8_19","relation":{"is-part-of":[{"id-type":"doi","id":"https:\/\/doi.org\/10.1007\/978-1-4939-0703-8","asserted-by":"object"}]},"ISSN":["1064-3745","1940-6029"],"issn-type":[{"value":"1064-3745","type":"print"},{"value":"1940-6029","type":"electronic"}],"subject":[],"published":{"date-parts":[[2014]]},"assertion":[{"value":"11 April 2014","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}}]}}