{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,27]],"date-time":"2025-03-27T20:15:18Z","timestamp":1743106518486,"version":"3.40.3"},"publisher-location":"Totowa, NJ","reference-count":91,"publisher":"Humana Press","isbn-type":[{"type":"print","value":"9781627032803"},{"type":"electronic","value":"9781627032810"}],"license":[{"start":{"date-parts":[[2013,1,1]],"date-time":"2013-01-01T00:00:00Z","timestamp":1356998400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2013,1,1]],"date-time":"2013-01-01T00:00:00Z","timestamp":1356998400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013]]},"DOI":"10.1007\/978-1-62703-281-0_19","type":"book-chapter","created":{"date-parts":[[2013,2,14]],"date-time":"2013-02-14T17:06:07Z","timestamp":1360861567000},"page":"297-324","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":5,"title":["Applications of Array-CGH for Lung Cancer"],"prefix":"10.1007","author":[{"given":"Kenneth J.","family":"Craddock","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Wan L.","family":"Lam","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ming-Sound","family":"Tsao","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2013,1,15]]},"reference":[{"issue":"2","key":"19_CR00191","doi-asserted-by":"publisher","first-page":"69","DOI":"10.3322\/caac.20107","volume":"61","author":"A Jemal","year":"2011","unstructured":"Jemal A, Bray F, Center MM et al (2011) Global cancer statistics. CA Cancer J Clin 61(2):69\u201390","journal-title":"CA Cancer J Clin"},{"issue":"11","key":"19_CR00192","doi-asserted-by":"publisher","first-page":"e442","DOI":"10.1371\/journal.pmed.0030442","volume":"3","author":"CD Mathers","year":"2006","unstructured":"Mathers CD, Loncar D (2006) Projections of global mortality and burden of disease from 2002 to 2030. PLoS Med 3(11):e442\u2013e442","journal-title":"PLoS Med"},{"issue":"5","key":"19_CR00193","doi-asserted-by":"publisher","first-page":"277","DOI":"10.3322\/caac.20073","volume":"60","author":"A Jemal","year":"2010","unstructured":"Jemal A, Siegel R, Xu J et al (2010) Cancer statistics, 2010. CA Cancer J Clin 60(5):277\u2013300","journal-title":"CA Cancer J Clin"},{"key":"19_CR00194","volume-title":"Pathology and genetics of tumours of the lung, pleura, thymus and heart","author":"TI Ag","year":"2004","unstructured":"Ag TI (2004) Pathology and genetics of tumours of the lung, pleura, thymus and heart. WHO Publications, France"},{"issue":"7257","key":"19_CR00195","doi-asserted-by":"publisher","first-page":"323","DOI":"10.1136\/bmj.321.7257.323","volume":"321","author":"R Peto","year":"2000","unstructured":"Peto R, Darby S, Deo H et al (2000) Smoking, smoking cessation, and lung cancer in the uk since 1950: combination of national statistics with two case\u2013control studies. BMJ (Clin Res Ed) 321(7257):323\u2013329","journal-title":"BMJ (Clin Res Ed)"},{"issue":"10","key":"19_CR00196","doi-asserted-by":"publisher","first-page":"778","DOI":"10.1038\/nrc2190","volume":"7","author":"S Sun","year":"2007","unstructured":"Sun S, Schiller JH, Gazdar AF (2007) Lung cancer in never smokers\u2013a different disease. Nat Rev Cancer 7(10):778\u2013790","journal-title":"Nat Rev Cancer"},{"issue":"9","key":"19_CR00197","doi-asserted-by":"publisher","first-page":"1049","DOI":"10.1097\/JTO.0b013e3181b27799","volume":"4","author":"E Valli\u00e3 Res","year":"2009","unstructured":"Valli\u00e3 Res E, Shepherd FA, Crowley J et al (2009) The iaslc lung cancer staging project: proposals regarding the relevance of tnm in the pathologic staging of small cell lung cancer in the forthcoming (seventh) edition of the tnm classification for lung cancer. J Thorac Oncol 4(9):1049\u20131059","journal-title":"J Thorac Oncol"},{"issue":"28","key":"19_CR00198","doi-asserted-by":"publisher","first-page":"4539","DOI":"10.1200\/JCO.2005.04.4859","volume":"24","author":"R Govindan","year":"2006","unstructured":"Govindan R, Page N, Morgensztern D et al (2006) Changing epidemiology of small-cell lung cancer in the united states over the last 30 years: analysis of the surveillance, epidemiologic, and end results database. J Clin Oncol 24(28):4539\u20134544","journal-title":"J Clin Oncol"},{"issue":"8","key":"19_CR00199","doi-asserted-by":"publisher","first-page":"706","DOI":"10.1097\/JTO.0b013e31812f3c1a","volume":"2","author":"P Goldstraw","year":"2007","unstructured":"Goldstraw P, Crowley J, Chansky K et al (2007) The iaslc lung cancer staging project: proposals for the revision of the tnm stage groupings in the forthcoming (seventh) edition of the tnm classification of malignant tumours. J Thorac Oncol 2(8):706\u2013714","journal-title":"J Thorac Oncol"},{"doi-asserted-by":"crossref","unstructured":"Reduced lung-cancer mortality with low-dose computed tomographic screening. N Engl J Med 365 (5):395\u2013409","key":"19_CR001910","DOI":"10.1056\/NEJMoa1102873"},{"issue":"9804","key":"19_CR001911","doi-asserted-by":"publisher","first-page":"1727","DOI":"10.1016\/S0140-6736(10)62101-0","volume":"378","author":"P Goldstraw","year":"2011","unstructured":"Goldstraw P, Ball D, Jett JR et al (2011) Non-small-cell lung cancer. Lancet 378(9804):1727\u20131740","journal-title":"Lancet"},{"doi-asserted-by":"crossref","unstructured":"Chemotherapy in addition to supportive care improves survival in advanced non-small-cell lung cancer: a systematic review and meta-analysis of individual patient data from 16 randomized controlled trials (2008). J Clin Oncol 26 (28):4617\u20134625","key":"19_CR001912","DOI":"10.1200\/JCO.2008.17.7162"},{"issue":"4","key":"19_CR001913","doi-asserted-by":"publisher","first-page":"2933","DOI":"10.1378\/chest.128.4.2933","volume":"128","author":"AL Visbal","year":"2005","unstructured":"Visbal AL, Leighl NB, Feld R et al (2005) Adjuvant chemotherapy for early-stage non-small cell lung cancer. Chest 128(4):2933\u20132943. doi:128\/4\/2933 (pii) 10.1378\/chest.128.4.2933","journal-title":"Chest"},{"issue":"9","key":"19_CR001914","doi-asserted-by":"publisher","first-page":"643","DOI":"10.1093\/jnci\/dji112","volume":"97","author":"F Cappuzzo","year":"2005","unstructured":"Cappuzzo F, Hirsch FR, Rossi E et al (2005) Epidermal growth factor receptor gene and protein and gefitinib sensitivity in non-small-cell lung cancer. J Natl Cancer Inst 97(9):643\u2013655. doi:97\/9\/643 (pii) 10.1093\/jnci\/dji112","journal-title":"J Natl Cancer Inst"},{"issue":"28","key":"19_CR001915","doi-asserted-by":"publisher","first-page":"6829","DOI":"10.1200\/JCO.2005.01.0793","volume":"23","author":"T Takano","year":"2005","unstructured":"Takano T, Ohe Y, Sakamoto H et al (2005) Epidermal growth factor receptor gene mutations and increased copy numbers predict gefitinib sensitivity in patients with recurrent non-small-cell lung cancer. J Clin Oncol 23(28):6829\u20136837. doi:JCO.2005.01.0793 (pii) 10.1200\/JCO.2005.01.0793","journal-title":"J Clin Oncol"},{"issue":"4","key":"19_CR001916","doi-asserted-by":"publisher","first-page":"752","DOI":"10.1093\/annonc\/mdm003","volume":"18","author":"FR Hirsch","year":"2007","unstructured":"Hirsch FR, Varella-Garcia M, Cappuzzo F et al (2007) Combination of egfr gene copy number and protein expression predicts outcome for advanced non-small-cell lung cancer patients treated with gefitinib. Ann Oncol 18(4):752\u2013760. doi:mdm003 (pii) 10.1093\/annonc\/mdm003","journal-title":"Ann Oncol"},{"issue":"13","key":"19_CR001917","doi-asserted-by":"publisher","first-page":"4275","DOI":"10.1158\/1078-0432.CCR-08-0168","volume":"14","author":"JP Koivunen","year":"2008","unstructured":"Koivunen JP, Mermel C, Zejnullahu K et al (2008) Eml4-alk fusion gene and efficacy of an alk kinase inhibitor in lung cancer. Clin Cancer Res 14(13):4275\u20134283","journal-title":"Clin Cancer Res"},{"issue":"22","key":"19_CR001918","doi-asserted-by":"publisher","first-page":"5581","DOI":"10.1158\/1078-0432.CCR-10-0851","volume":"16","author":"DR Camidge","year":"2010","unstructured":"Camidge DR, Kono SA, Flacco A et al (2010) Optimizing the detection of lung cancer patients harboring anaplastic lymphoma kinase (alk) gene rearrangements potentially suitable for alk inhibitor treatment. Clin Cancer Res 16(22):5581\u20135590","journal-title":"Clin Cancer Res"},{"issue":"2","key":"19_CR001919","doi-asserted-by":"publisher","first-page":"139","DOI":"10.1038\/sj.ejhg.5201531","volume":"14","author":"WW Lockwood","year":"2006","unstructured":"Lockwood WW, Chari R, Chi B et al (2006) Recent advances in array comparative genomic hybridization technologies and their applications in human genetics. Euro J Hum Genet: EJHG 14(2):139\u2013148","journal-title":"Euro J Hum Genet: EJHG"},{"issue":"2","key":"19_CR001920","doi-asserted-by":"publisher","first-page":"98","DOI":"10.1016\/j.semradonc.2007.10.005","volume":"18","author":"JL Costa","year":"2008","unstructured":"Costa JL, Meijer G, Ylstra B et al (2008) Array comparative genomic hybridization copy number profiling: a new tool for translational research in solid malignancies. Semin Radiat Oncol 18(2):98\u2013104","journal-title":"Semin Radiat Oncol"},{"issue":"4","key":"19_CR001921","doi-asserted-by":"publisher","first-page":"475","DOI":"10.1093\/hmg\/ddi043","volume":"14","author":"C Garnis","year":"2005","unstructured":"Garnis C, Campbell J, Davies JJ et al (2005) Involvement of multiple developmental genes on chromosome 1p in lung tumorigenesis. Hum Mol Genet 14(4):475\u2013482","journal-title":"Hum Mol Genet"},{"issue":"30","key":"19_CR001922","doi-asserted-by":"publisher","first-page":"4806","DOI":"10.1038\/sj.onc.1208643","volume":"24","author":"C Garnis","year":"2005","unstructured":"Garnis C, Davies JJ, Buys TPH et al (2005) Chromosome 5p aberrations are early events in lung cancer: implication of glial cell line-derived neurotrophic factor in disease progression. Oncogene 24(30):4806\u20134812","journal-title":"Oncogene"},{"issue":"3","key":"19_CR001923","doi-asserted-by":"publisher","first-page":"308","DOI":"10.1002\/gcc.20137","volume":"42","author":"BP Coe","year":"2005","unstructured":"Coe BP, Henderson LJ, Garnis C et al (2005) High-resolution chromosome arm 5p array cgh analysis of small cell lung carcinoma cell lines. Genes Chromosomes Cancer 42(3):308\u2013313. doi:10.1002\/gcc.20137","journal-title":"Genes Chromosomes Cancer"},{"issue":"3","key":"19_CR001924","doi-asserted-by":"publisher","first-page":"299","DOI":"10.1038\/ng1307","volume":"36","author":"AS Ishkanian","year":"2004","unstructured":"Ishkanian AS, Malloff CA, Watson SK et al (2004) A tiling resolution DNA microarray with complete coverage of the human genome. Nat Genet 36(3):299\u2013303","journal-title":"Nat Genet"},{"issue":"29","key":"19_CR001925","doi-asserted-by":"publisher","first-page":"10155","DOI":"10.1073\/pnas.0709618105","volume":"105","author":"S Aviel-Ronen","year":"2008","unstructured":"Aviel-Ronen S, Coe BP, Lau SK et al (2008) Genomic markers for malignant progression in pulmonary adenocarcinoma with bronchioloalveolar features. Proc Natl Acad Sci USA 105(29):10155\u201310160. doi:0709618105 (pii) 10.1073\/pnas.0709618105","journal-title":"Proc Natl Acad Sci USA"},{"issue":"7171","key":"19_CR001926","doi-asserted-by":"publisher","first-page":"893","DOI":"10.1038\/nature06358","volume":"450","author":"BA Weir","year":"2007","unstructured":"Weir BA, Woo MS, Getz G et al (2007) Characterizing the cancer genome in lung adenocarcinoma. Nature 450(7171):893\u2013898. doi:nature06358 (pii) 10.1038\/nature06358","journal-title":"Nature"},{"issue":"11","key":"19_CR001927","doi-asserted-by":"publisher","first-page":"1238","DOI":"10.1038\/ng.465","volume":"41","author":"AJ Bass","year":"2009","unstructured":"Bass AJ, Watanabe H, Mermel CH et al (2009) Sox2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas. Nat Genet 41(11):1238\u20131242. doi:ng.465 (pii) 10.1038\/ng.465","journal-title":"Nat Genet"},{"issue":"5","key":"19_CR001928","doi-asserted-by":"publisher","first-page":"647","DOI":"10.1016\/j.ygeno.2006.12.012","volume":"89","author":"BP Coe","year":"2007","unstructured":"Coe BP, Ylstra B, Carvalho B et al (2007) Resolving the resolution of array cgh. Genomics 89(5):647\u2013653","journal-title":"Genomics"},{"issue":"9","key":"19_CR001929","doi-asserted-by":"publisher","first-page":"e3179","DOI":"10.1371\/journal.pone.0003179","volume":"3","author":"BS Taylor","year":"2008","unstructured":"Taylor BS, Barretina J, Socci ND et al (2008) Functional copy-number alterations in cancer. PLoS One 3(9):e3179\u2013e3179","journal-title":"PLoS One"},{"issue":"6","key":"19_CR001930","doi-asserted-by":"publisher","first-page":"1001","DOI":"10.1093\/hmg\/ddp564","volume":"19","author":"S-H Yim","year":"2010","unstructured":"Yim S-H, Kim T-M, Hu H-J et al (2010) Copy number variations in east-asian population and their evolutionary and functional implications. Hum Mol Genet 19(6):1001\u20131008","journal-title":"Hum Mol Genet"},{"issue":"8","key":"19_CR001931","doi-asserted-by":"publisher","first-page":"697","DOI":"10.1002\/gcc.20575","volume":"47","author":"R Gunnarsson","year":"2008","unstructured":"Gunnarsson R, Staaf J, Jansson M et al (2008) Screening for copy-number alterations and loss of heterozygosity in chronic lymphocytic leukemia\u2013a comparative study of four differently designed, high resolution microarray platforms. Genes Chromosomes Cancer 47(8):697\u2013711","journal-title":"Genes Chromosomes Cancer"},{"key":"19_CR001932","doi-asserted-by":"publisher","first-page":"103","DOI":"10.1007\/978-1-60327-367-1_6","volume":"628","author":"EA Vucic","year":"2010","unstructured":"Vucic EA, Thu KL, Williams AC et al (2010) Copy number variations in the human genome and strategies for analysis. Methods Mol Biol 628:103\u2013117","journal-title":"Methods Mol Biol"},{"issue":"5","key":"19_CR001933","doi-asserted-by":"publisher","first-page":"363","DOI":"10.1038\/nrg2958","volume":"12","author":"C Alkan","year":"2011","unstructured":"Alkan C, Coe BP, Eichler EE (2011) Genome structural variation discovery and genotyping. Nat Rev Genet 12(5):363\u2013376","journal-title":"Nat Rev Genet"},{"issue":"15","key":"19_CR001934","doi-asserted-by":"publisher","first-page":"e157","DOI":"10.1093\/nar\/gkq548","volume":"38","author":"BP Coe","year":"2010","unstructured":"Coe BP, Chari R, Macaulay C et al (2010) Facade: a fast and sensitive algorithm for the segmentation and calling of high resolution array cgh data. Nucleic Acids Res 38(15):e157\u2013e157","journal-title":"Nucleic Acids Res"},{"issue":"3\u20134","key":"19_CR001935","doi-asserted-by":"publisher","first-page":"205","DOI":"10.1159\/000095916","volume":"115","author":"J Zhang","year":"2006","unstructured":"Zhang J, Feuk L, Duggan GE et al (2006) Development of bioinformatics resources for display and analysis of copy number and other structural variants in the human genome. Cytogenet Genome Res 115(3\u20134):205\u2013214","journal-title":"Cytogenet Genome Res"},{"key":"19_CR001936","doi-asserted-by":"crossref","first-page":"48","DOI":"10.1177\/117693510600200007","volume":"2","author":"R Chari","year":"2006","unstructured":"Chari R, Lockwood WW, Lam WL (2006) Computational methods for the analysis of array comparative genomic hybridization. Cancer Informatics 2:48\u201358","journal-title":"Cancer Informatics"},{"key":"19_CR001937","doi-asserted-by":"publisher","first-page":"13","DOI":"10.1186\/1471-2105-5-13","volume":"5","author":"B Chi","year":"2004","unstructured":"Chi B, Deleeuw RJ, Coe BP et al (2004) Seegh\u2013a software tool for visualization of whole genome array comparative genomic hybridization data. BMC Bioinformatics 5:13\u201313","journal-title":"BMC Bioinformatics"},{"issue":"1","key":"19_CR001938","doi-asserted-by":"publisher","first-page":"394","DOI":"10.1186\/1756-0500-4-394","volume":"4","author":"F-H Hsu","year":"2011","unstructured":"Hsu F-H, Chen H-IH, Tsai M-H et al (2011) A model-based circular binary segmentation algorithm for the analysis of array cgh data. BMC Res Notes 4(1):394\u2013394","journal-title":"BMC Res Notes"},{"key":"19_CR001939","doi-asserted-by":"publisher","first-page":"W182","DOI":"10.1093\/nar\/gkq441","volume":"38","author":"A Carro","year":"2010","unstructured":"Carro A, Rico D, Rueda OM et al (2010) Wavicgh: a web application for the analysis and visualization of genomic copy number alterations. Nucleic Acids Res 38:W182\u2013W187","journal-title":"Nucleic Acids Res"},{"issue":"10","key":"19_CR001940","doi-asserted-by":"publisher","first-page":"1366","DOI":"10.1093\/bioinformatics\/btq155","volume":"26","author":"BPP Van Houte","year":"2010","unstructured":"Van Houte BPP, Binsl TW, Hettling H et al (2010) Cghnormaliter: a bioconductor package for normalization of array cgh data with many cnas. Bioinformatics 26(10):1366\u20131367","journal-title":"Bioinformatics"},{"issue":"9","key":"19_CR001941","doi-asserted-by":"publisher","first-page":"1099","DOI":"10.1093\/bioinformatics\/btp132","volume":"25","author":"MA Van De Wiel","year":"2009","unstructured":"Van De Wiel MA, Brosens R, Eilers PHC et al (2009) Smoothing waves in array cgh tumor profiles. Bioinformatics 25(9):1099\u20131104","journal-title":"Bioinformatics"},{"key":"19_CR001942","doi-asserted-by":"publisher","first-page":"422","DOI":"10.1186\/1471-2105-9-422","volume":"9","author":"R Chari","year":"2008","unstructured":"Chari R, Coe BP, Wedseltoft C et al (2008) Sigma2: a system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes. BMC Bioinformatics 9:422\u2013422","journal-title":"BMC Bioinformatics"},{"issue":"13","key":"19_CR001943","doi-asserted-by":"publisher","first-page":"i450","DOI":"10.1093\/bioinformatics\/btm221","volume":"23","author":"SP Shah","year":"2007","unstructured":"Shah SP, Lam WL, Ng RT et al (2007) Modeling recurrent DNA copy number alterations in array cgh data. Bioinformatics 23(13):i450\u2013i458","journal-title":"Bioinformatics"},{"key":"19_CR001944","doi-asserted-by":"publisher","first-page":"243","DOI":"10.1186\/1471-2105-9-243","volume":"9","author":"B Chi","year":"2008","unstructured":"Chi B, Deleeuw RJ, Coe BP et al (2008) Md-seegh: a platform for integrative analysis of multi-dimensional genomic data. BMC Bioinformatics 9:243\u2013243","journal-title":"BMC Bioinformatics"},{"issue":"45","key":"19_CR001945","doi-asserted-by":"publisher","first-page":"6877","DOI":"10.1038\/sj.onc.1205836","volume":"21","author":"BR Balsara","year":"2002","unstructured":"Balsara BR, Testa JR (2002) Chromosomal imbalances in human lung cancer. Oncogene 21(45):6877\u20136883","journal-title":"Oncogene"},{"issue":"2","key":"19_CR001946","doi-asserted-by":"publisher","first-page":"99","DOI":"10.1016\/j.cancergencyto.2004.01.030","volume":"154","author":"M Hoglund","year":"2004","unstructured":"Hoglund M, Gisselsson D, Hansen GB et al (2004) Statistical dissection of cytogenetic patterns in lung cancer reveals multiple modes of karyotypic evolution independent of histological classification. Cancer Genet Cytogenet 154(2):99\u2013109. doi:S0165-4608(04)00067-6 (pii) 10.1016\/j.cancergencyto.2004.01.030","journal-title":"Cancer Genet Cytogenet"},{"issue":"27","key":"19_CR001947","doi-asserted-by":"publisher","first-page":"9625","DOI":"10.1073\/pnas.0504126102","volume":"102","author":"G Tonon","year":"2005","unstructured":"Tonon G, Wong KK, Maulik G et al (2005) High-resolution genomic profiles of human lung cancer. Proc Natl Acad Sci USA 102(27):9625\u20139630. doi:0504126102 (pii) 10.1073\/pnas.0504126102","journal-title":"Proc Natl Acad Sci USA"},{"issue":"62","key":"19_CR001948","doi-asserted-by":"publisher","first-page":"62ra93","DOI":"10.1126\/scitranslmed.3001451","volume":"2","author":"J Weiss","year":"2010","unstructured":"Weiss J, Sos ML, Seidel D et al (2010) Frequent and focal fgfr1 amplification associates with therapeutically tractable fgfr1 dependency in squamous cell lung cancer. Sci Transl Med 2(62):62ra93. doi:2\/62\/62ra93 (pii) 10.1126\/scitranslmed.3001451","journal-title":"Sci Transl Med"},{"issue":"29","key":"19_CR001949","doi-asserted-by":"publisher","first-page":"13040","DOI":"10.1073\/pnas.1008132107","volume":"107","author":"J Voortman","year":"2010","unstructured":"Voortman J, Lee JH, Killian JK et al (2010) Array comparative genomic hybridization-based characterization of genetic alterations in pulmonary neuroendocrine tumors. Proc Natl Acad Sci USA 107(29):13040\u201313045. doi:1008132107 (pii) 10.1073\/pnas.1008132107","journal-title":"Proc Natl Acad Sci USA"},{"key":"19_CR001950","doi-asserted-by":"publisher","first-page":"93","DOI":"10.1186\/1471-2407-11-93","volume":"11","author":"GM Newnham","year":"2011","unstructured":"Newnham GM, Conron M, Mclachlan S et al (2011) Integrated mutation, copy number and expression profiling in resectable non-small cell lung cancer. BMC Cancer 11:93\u201393","journal-title":"BMC Cancer"},{"key":"19_CR001951","doi-asserted-by":"publisher","first-page":"237","DOI":"10.1186\/1471-2407-9-237","volume":"9","author":"JU Kang","year":"2009","unstructured":"Kang JU, Koo SH, Kwon KC et al (2009) Identification of novel candidate target genes, including ephb3, masp1 and sst at 3q26.2-q29 in squamous cell carcinoma of the lung. BMC Cancer 9:237. doi:1471-2407-9-237 (pii) 10.1186\/1471-2407-9-237","journal-title":"BMC Cancer"},{"issue":"7","key":"19_CR001952","doi-asserted-by":"publisher","first-page":"e1000315","DOI":"10.1371\/journal.pmed.1000315","volume":"7","author":"WW Lockwood","year":"2010","unstructured":"Lockwood WW, Chari R, Coe BP et al (2010) Integrative genomic analyses identify brf2 as a novel lineage-specific oncogene in lung squamous cell carcinoma. PLoS Med 7(7):e1000315\u2013e1000315","journal-title":"PLoS Med"},{"issue":"13","key":"19_CR001953","first-page":"3636","volume":"62","author":"PP Massion","year":"2002","unstructured":"Massion PP, Kuo WL, Stokoe D et al (2002) Genomic copy number analysis of non-small cell lung cancer using array comparative genomic hybridization: implications of the phosphatidylinositol 3-kinase pathway. Cancer Res 62(13):3636\u20133640","journal-title":"Cancer Res"},{"issue":"6","key":"19_CR001954","doi-asserted-by":"publisher","first-page":"1556","DOI":"10.1002\/ijc.21491","volume":"118","author":"C Garnis","year":"2006","unstructured":"Garnis C, Lockwood WW, Vucic E et al (2006) High resolution analysis of non-small cell lung cancer cell lines by whole genome tiling path array cgh. Int J Cancer 118(6):1556\u20131564. doi:10.1002\/ijc.21491","journal-title":"Int J Cancer"},{"issue":"25","key":"19_CR001955","doi-asserted-by":"publisher","first-page":"3635","DOI":"10.1038\/sj.onc.1211012","volume":"27","author":"KA Kwei","year":"2008","unstructured":"Kwei KA, Kim YH, Girard L et al (2008) Genomic profiling identifies titf1 as a lineage-specific oncogene amplified in lung cancer. Oncogene 27(25):3635\u20133640. doi:1211012 (pii) 10.1038\/sj.onc.1211012","journal-title":"Oncogene"},{"issue":"17","key":"19_CR001956","doi-asserted-by":"publisher","first-page":"6177","DOI":"10.1158\/1078-0432.CCR-05-0293","volume":"11","author":"T Shibata","year":"2005","unstructured":"Shibata T, Uryu S, Kokubu A et al (2005) Genetic classification of lung adenocarcinoma based on array-based comparative genomic hybridization analysis: its association with clinicopathologic features. Clin Cancer Res 11(17):6177\u20136185. doi:11\/17\/6177 (pii) 10.1158\/1078-0432.CCR-05-0293","journal-title":"Clin Cancer Res"},{"issue":"12","key":"19_CR001957","doi-asserted-by":"publisher","first-page":"1927","DOI":"10.1038\/sj.bjc.6603167","volume":"94","author":"BP Coe","year":"2006","unstructured":"Coe BP, Lockwood WW, Girard L et al (2006) Differential disruption of cell cycle pathways in small cell and non-small cell lung cancer. Br J Cancer 94(12):1927\u20131935","journal-title":"Br J Cancer"},{"issue":"10","key":"19_CR001958","doi-asserted-by":"publisher","first-page":"661","DOI":"10.1111\/j.1349-7006.2005.00092.x","volume":"96","author":"W-X Peng","year":"2005","unstructured":"Peng W-X, Shibata T, Katoh H et al (2005) Array-based comparative genomic hybridization analysis of high-grade neuroendocrine tumors of the lung. Cancer Sci 96(10):661\u2013667","journal-title":"Cancer Sci"},{"issue":"10","key":"19_CR001959","doi-asserted-by":"publisher","first-page":"1145","DOI":"10.1016\/S0046-8177(98)90428-2","volume":"29","author":"R Ullmann","year":"1998","unstructured":"Ullmann R, Schwendel A, Klemen H et al (1998) Unbalanced chromosomal aberrations in neuroendocrine lung tumors as detected by comparative genomic hybridization. Hum Pathol 29(10):1145\u20131149. doi:S0046-8177(98)90428-2 (pii)","journal-title":"Hum Pathol"},{"issue":"3","key":"19_CR001960","doi-asserted-by":"publisher","first-page":"438","DOI":"10.1111\/j.1349-7006.2006.00386.x","volume":"98","author":"T Taniguchi","year":"2007","unstructured":"Taniguchi T, Karnan S, Fukui T et al (2007) Genomic profiling of malignant pleural mesothelioma with array-based comparative genomic hybridization shows frequent non-random chromosomal alteration regions including jun amplification on 1p32. Cancer Sci 98(3):438\u2013446","journal-title":"Cancer Sci"},{"issue":"14","key":"19_CR001961","doi-asserted-by":"publisher","first-page":"5686","DOI":"10.1158\/0008-5472.CAN-10-0190","volume":"70","author":"BC Christensen","year":"2010","unstructured":"Christensen BC, Houseman EA, Poage GM et al (2010) Integrated profiling reveals a global correlation between epigenetic and genetic alterations in mesothelioma. Cancer Res 70(14):5686\u20135694. doi:0008-5472.CAN-10-0190 (pii) 10.1158\/0008-5472.CAN-10-0190","journal-title":"Cancer Res"},{"issue":"7","key":"19_CR001962","doi-asserted-by":"publisher","first-page":"668","DOI":"10.1038\/ng.855","volume":"43","author":"M Bott","year":"2011","unstructured":"Bott M, Brevet M, Taylor BS et al (2011) The nuclear deubiquitinase bap1 is commonly inactivated by somatic mutations and 3p21.1 losses in malignant pleural mesothelioma. Nat Genet 43(7):668\u2013672. doi:ng.855 (pii) 10.1038\/ng.855","journal-title":"Nat Genet"},{"issue":"3","key":"19_CR001963","doi-asserted-by":"publisher","first-page":"873","DOI":"10.1158\/0008-5472.CAN-10-2164","volume":"71","author":"H Murakami","year":"2011","unstructured":"Murakami H, Mizuno T, Taniguchi T et al (2011) Lats2 is a tumor suppressor gene of malignant mesothelioma. Cancer Res 71(3):873\u2013883. doi:0008-5472.CAN-10-2164 (pii) 10.1158\/0008-5472.CAN-10-2164","journal-title":"Cancer Res"},{"issue":"1","key":"19_CR001964","doi-asserted-by":"publisher","first-page":"77","DOI":"10.1136\/jclinpath-2011-200208","volume":"65","author":"M Takeda","year":"2012","unstructured":"Takeda M, Kasai T, Enomoto Y et al (2012) Genomic gains and losses in malignant mesothelioma demonstrated by fish analysis of paraffin-embedded tissues. J Clin Pathol 65(1):77\u201382","journal-title":"J Clin Pathol"},{"issue":"6","key":"19_CR001965","doi-asserted-by":"publisher","first-page":"742","DOI":"10.1038\/modpathol.2008.45","volume":"21","author":"S Chiosea","year":"2008","unstructured":"Chiosea S, Krasinskas A, Cagle PT et al (2008) Diagnostic importance of 9p21 homozygous deletion in malignant mesotheliomas. Modern Pathol 21(6):742\u2013747","journal-title":"Modern Pathol"},{"issue":"2","key":"19_CR001966","doi-asserted-by":"publisher","first-page":"e9162","DOI":"10.1371\/journal.pone.0009162","volume":"5","author":"KM Lonergan","year":"2010","unstructured":"Lonergan KM, Chari R, Coe BP et al (2010) Transcriptome profiles of carcinoma-in-situ and invasive non-small cell lung cancer as revealed by sage. PLoS One 5(2):e9162\u2013e9162","journal-title":"PLoS One"},{"issue":"3","key":"19_CR001967","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1016\/j.lungcan.2003.11.013","volume":"44","author":"C Garnis","year":"2004","unstructured":"Garnis C, Macaulay C, Lam S et al (2004) Genetic alteration on 8q distinct from myc in bronchial carcinoma in situ lesions. Lung Cancer 44(3):403\u2013404","journal-title":"Lung Cancer"},{"issue":"8","key":"19_CR001968","doi-asserted-by":"publisher","first-page":"948","DOI":"10.1164\/rccm.201102-0218OC","volume":"184","author":"RA Van Boerdonk","year":"2011","unstructured":"Van Boerdonk RA, Sutedja TG, Snijders PJ et al (2011) DNA copy number alterations in endobronchial squamous metaplastic lesions predict lung cancer. Am J Respir Crit Care Med 184(8):948\u2013956. doi:201102-0218OC (pii) 10.1164\/rccm.201102-0218OC","journal-title":"Am J Respir Crit Care Med"},{"key":"19_CR001969","doi-asserted-by":"publisher","first-page":"102","DOI":"10.1186\/1471-2407-11-102","volume":"11","author":"KU Schneider","year":"2011","unstructured":"Schneider KU, Dietrich D, Fleischhacker M et al (2011) Correlation of shox2 gene amplification and DNA methylation in lung cancer tumors. BMC Cancer 11:102\u2013102","journal-title":"BMC Cancer"},{"issue":"4","key":"19_CR001970","doi-asserted-by":"publisher","first-page":"257","DOI":"10.1136\/jcp.54.4.257","volume":"54","author":"KM Kerr","year":"2001","unstructured":"Kerr KM (2001) Pulmonary preinvasive neoplasia. J Clin Pathol 54(4):257\u2013271","journal-title":"J Clin Pathol"},{"issue":"1","key":"19_CR001971","doi-asserted-by":"publisher","first-page":"43","DOI":"10.1111\/j.1365-2559.2008.03182.x","volume":"54","author":"S Lantu\u00e9joul","year":"2009","unstructured":"Lantu\u00e9joul S, Salameire D, Salon C et al (2009) Pulmonary preneoplasia\u2013sequential molecular carcinogenetic events. Histopathology 54(1):43\u201354","journal-title":"Histopathology"},{"issue":"2","key":"19_CR001972","doi-asserted-by":"publisher","first-page":"244","DOI":"10.1097\/JTO.0b013e318206a221","volume":"6","author":"WD Travis","year":"2011","unstructured":"Travis WD, Brambilla E, Noguchi M et al (2011) International association for the study of lung cancer\/american thoracic society\/european respiratory society international multidisciplinary classification of lung adenocarcinoma. J Thorac Oncol 6(2):244\u2013285","journal-title":"J Thorac Oncol"},{"issue":"2","key":"19_CR001973","doi-asserted-by":"publisher","first-page":"227","DOI":"10.1097\/JTO.0b013e3181952678","volume":"4","author":"TPH Buys","year":"2009","unstructured":"Buys TPH, Aviel-Ronen S, Waddell TK et al (2009) Defining genomic alteration boundaries for a combined small cell and non-small cell lung carcinoma. J Thorac Oncol 4(2):227\u2013239","journal-title":"J Thorac Oncol"},{"issue":"16","key":"19_CR001974","doi-asserted-by":"publisher","first-page":"5184","DOI":"10.1158\/1078-0432.CCR-09-0594","volume":"15","author":"N Girard","year":"2009","unstructured":"Girard N, Ostrovnaya I, Lau C et al (2009) Genomic and mutational profiling to assess clonal relationships between multiple non-small cell lung cancers. Clin Cancer Res 15(16):5184\u20135190","journal-title":"Clin Cancer Res"},{"issue":"3","key":"19_CR001975","doi-asserted-by":"publisher","first-page":"372","DOI":"10.1016\/j.lungcan.2009.02.017","volume":"66","author":"MC Boelens","year":"2009","unstructured":"Boelens MC, Kok K, Van Der Vlies P et al (2009) Genomic aberrations in squamous cell lung carcinoma related to lymph node or distant metastasis. Lung Cancer 66(3):372\u2013378. doi:S0169-5002(09)00115-9 (pii) 10.1016\/j.lungcan.2009.02.017","journal-title":"Lung Cancer"},{"issue":"5","key":"19_CR001976","doi-asserted-by":"publisher","first-page":"1566","DOI":"10.1158\/1078-0432.CCR-08-2188","volume":"15","author":"M Wrage","year":"2009","unstructured":"Wrage M, Ruosaari S, Eijk PP et al (2009) Genomic profiles associated with early micrometastasis in lung cancer: relevance of 4q deletion. Clin Cancer Res 15(5):1566\u20131574. doi:1078-0432.CCR-08-2188 (pii) 10.1158\/ 1078-0432.CCR-08-2188","journal-title":"Clin Cancer Res"},{"issue":"2","key":"19_CR0019721","doi-asserted-by":"publisher","first-page":"327","DOI":"10.3892\/ijo_00000678","volume":"37","author":"JU Kang","year":"2010","unstructured":"Iwakawa et al (2011) MYC amplification as a prognostic markers of early-stage lung adenocarcinoma identified by whole genome copy numbers analysis. Clin Cancer Res 17: 1481\u20131489.","journal-title":"Int J Oncol"},{"issue":"2","key":"19_CR001977","doi-asserted-by":"publisher","first-page":"327","DOI":"10.3892\/ijo_00000678","volume":"37","author":"JU Kang","year":"2010","unstructured":"Kang JU, Koo SH, Kwon KC et al (2010) Frequent silence of chromosome 9p, homozygous dock8, dmrt1 and dmrt3 deletion at 9p24.3 in squamous cell carcinoma of the lung. Int J Oncol 37(2):327\u2013335","journal-title":"Int J Oncol"},{"issue":"21","key":"19_CR001978","doi-asserted-by":"publisher","first-page":"2129","DOI":"10.1056\/NEJMoa040938","volume":"350","author":"TJ Lynch","year":"2004","unstructured":"Lynch TJ, Bell DW, Sordella R et al (2004) Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib. N Engl J Med 350(21):2129\u20132139. doi: 10.1056\/NEJMoa040938 NEJMoa040938 (pii)","journal-title":"N Engl J Med"},{"issue":"5","key":"19_CR001979","doi-asserted-by":"publisher","first-page":"587","DOI":"10.1200\/JCO.2006.07.3585","volume":"25","author":"LV Sequist","year":"2007","unstructured":"Sequist LV, Bell DW, Lynch TJ et al (2007) Molecular predictors of response to epidermal growth factor receptor antagonists in non-small-cell lung cancer. J Clin Oncol 25(5):587\u2013595. doi:25\/5\/587 (pii) 10.1200\/JCO.2006.07.3585","journal-title":"J Clin Oncol"},{"issue":"14 Pt 2","key":"19_CR001980","doi-asserted-by":"publisher","first-page":"4384s","DOI":"10.1158\/1078-0432.CCR-06-0098","volume":"12","author":"RK Thomas","year":"2006","unstructured":"Thomas RK, Weir B, Meyerson M (2006) Genomic approaches to lung cancer. Clin Cancer Res 12(14 Pt 2):4384s\u20134391s. doi:12\/14\/4384s (pii) 10.1158\/1078-0432.CCR-06-0098","journal-title":"Clin Cancer Res"},{"issue":"1","key":"19_CR001981","doi-asserted-by":"publisher","first-page":"84","DOI":"10.1097\/JTO.0b013e31815efe24","volume":"3","author":"CG Azzoli","year":"2008","unstructured":"Azzoli CG, Park BJ, Pao W et al (2008) Molecularly tailored adjuvant chemotherapy for resected non-small cell lung cancer: a time for excitement and equipoise. J Thorac Oncol 3(1):84\u201393. doi:10.1097\/JTO.0b013e31815efe 2401243894-200801000-00015 (pii)","journal-title":"J Thorac Oncol"},{"issue":"6","key":"19_CR001982","doi-asserted-by":"publisher","first-page":"1016","DOI":"10.1097\/JTO.0b013e318215a4f2","volume":"6","author":"C Li","year":"2011","unstructured":"Li C, Sun Y, Fang Z et al (2011) Comprehensive analysis of epidermal growth factor receptor gene status in lung adenocarcinoma. J Thorac Oncol 6(6):1016\u20131021","journal-title":"J Thorac Oncol"},{"issue":"4","key":"19_CR001983","doi-asserted-by":"publisher","first-page":"331","DOI":"10.1158\/1541-7786.MCR-06-0367","volume":"5","author":"ET Olejniczak","year":"2007","unstructured":"Olejniczak ET, Van Sant C, Anderson MG et al (2007) Integrative genomic analysis of small-cell lung carcinoma reveals correlates of sensitivity to bcl-2 antagonists and uncovers novel chromosomal gains. Mole Cancer Res: MCR 5(4):331\u2013339","journal-title":"Mole Cancer Res: MCR"},{"issue":"3","key":"19_CR001984","doi-asserted-by":"publisher","first-page":"240","DOI":"10.1097\/00129039-200409000-00010","volume":"12","author":"NHC Au","year":"2004","unstructured":"Au NHC, Gown AM, Cheang M et al (2004) P63 expression in lung carcinoma: a tissue microarray study of 408 cases. Appl Immunohistochem Mol Morphol 12(3):240\u2013247","journal-title":"Appl Immunohistochem Mol Morphol"},{"issue":"1","key":"19_CR001985","doi-asserted-by":"publisher","first-page":"e8960","DOI":"10.1371\/journal.pone.0008960","volume":"5","author":"T Hussenet","year":"2010","unstructured":"Hussenet T, Dali S, Exinger J et al (2010) Sox2 is an oncogene activated by recurrent 3q26.3 amplifications in human lung squamous cell carcinomas. PLoS One 5(1):e8960. doi:10.1371\/journal.pone.0008960","journal-title":"PLoS One"},{"issue":"10","key":"19_CR001986","doi-asserted-by":"publisher","first-page":"1348","DOI":"10.1038\/modpathol.2011.92","volume":"24","author":"N Rekhtman","year":"2011","unstructured":"Rekhtman N, Ang DC, Sima CS et al (2011) Immunohistochemical algorithm for differentiation of lung adenocarcinoma and squamous cell carcinoma based on large series of whole-tissue sections with validation in small specimens. Mod Pathol 24(10):1348\u20131359","journal-title":"Mod Pathol"},{"issue":"21","key":"19_CR001987","first-page":"7113","volume":"63","author":"PP Massion","year":"2003","unstructured":"Massion PP, Taflan PM, Jamshedur Rahman SM et al (2003) Significance of p63 amplification and overexpression in lung cancer development and prognosis. Cancer Res 63(21):7113\u20137121","journal-title":"Cancer Res"},{"issue":"8","key":"19_CR001988","doi-asserted-by":"publisher","first-page":"2434","DOI":"10.1158\/1078-0432.CCR-10-1412","volume":"17","author":"X Tang","year":"2011","unstructured":"Tang X, Kadara H, Behrens C et al (2011) Abnormalities of the titf-1 lineage-specific oncogene in nsclc: implications in lung cancer pathogenesis and prognosis. Clin Cancer Res 17(8):2434\u20132443","journal-title":"Clin Cancer Res"},{"issue":"13","key":"19_CR001989","doi-asserted-by":"publisher","first-page":"6007","DOI":"10.1158\/0008-5472.CAN-06-4774","volume":"67","author":"H Tanaka","year":"2007","unstructured":"Tanaka H, Yanagisawa K, Shinjo K et al (2007) Lineage-specific dependency of lung adenocarcinomas on the lung development regulator ttf-1. Cancer Res 67(13):6007\u20136011","journal-title":"Cancer Res"},{"issue":"4","key":"19_CR001991","doi-asserted-by":"publisher","first-page":"442","DOI":"10.1097\/JTO.0b013e3181d40fac","volume":"5","author":"PS Loo","year":"2010","unstructured":"Loo PS, Thomas SC, Nicolson MC et al (2010) Subtyping of undifferentiated non-small cell carcinomas in bronchial biopsy specimens. J Thorac Oncol 5(4):442\u2013447","journal-title":"J Thorac Oncol"}],"container-title":["Methods in Molecular Biology","Array Comparative Genomic Hybridization"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-1-62703-281-0_19","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,19]],"date-time":"2023-02-19T08:13:08Z","timestamp":1676794388000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-1-62703-281-0_19"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013]]},"ISBN":["9781627032803","9781627032810"],"references-count":91,"URL":"https:\/\/doi.org\/10.1007\/978-1-62703-281-0_19","relation":{},"ISSN":["1064-3745","1940-6029"],"issn-type":[{"type":"print","value":"1064-3745"},{"type":"electronic","value":"1940-6029"}],"subject":[],"published":{"date-parts":[[2013]]},"assertion":[{"value":"15 January 2013","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}}]}}