{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,31]],"date-time":"2026-07-31T15:38:57Z","timestamp":1785512337015,"version":"3.56.0"},"publisher-location":"Cham","reference-count":29,"publisher":"Springer International Publishing","isbn-type":[{"value":"9783030006679","type":"print"},{"value":"9783030006686","type":"electronic"}],"license":[{"start":{"date-parts":[[2018,1,1]],"date-time":"2018-01-01T00:00:00Z","timestamp":1514764800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"},{"start":{"date-parts":[[2018,1,1]],"date-time":"2018-01-01T00:00:00Z","timestamp":1514764800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/www.springernature.com\/gp\/researchers\/text-and-data-mining"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018]]},"DOI":"10.1007\/978-3-030-00668-6_14","type":"book-chapter","created":{"date-parts":[[2018,9,17]],"date-time":"2018-09-17T12:04:47Z","timestamp":1537185887000},"page":"223-238","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":15,"title":["Knowledge Integration for Disease Characterization: A Breast Cancer Example"],"prefix":"10.1007","author":[{"given":"Oshani","family":"Seneviratne","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sabbir M.","family":"Rashid","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shruthi","family":"Chari","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jamie P.","family":"McCusker","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kristin P.","family":"Bennett","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"James A.","family":"Hendler","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Deborah L.","family":"McGuinness","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"297","published-online":{"date-parts":[[2018,9,18]]},"reference":[{"key":"14_CR1","doi-asserted-by":"crossref","unstructured":"Amin, M.B., et al.: The Eighth Edition AJCC Cancer Staging Manual: Continuing to build a bridge from a population-based to a more personalized approach to cancer staging. CA: Cancer J. Clin. 67(2), 93\u201399 (2017)","DOI":"10.3322\/caac.21388"},{"issue":"6","key":"14_CR2","doi-asserted-by":"publisher","first-page":"686","DOI":"10.1097\/00000421-198812000-00027","volume":"11","author":"OH Beahrs","year":"1988","unstructured":"Beahrs, O.H., Henson, D.E., Hutter, R.V., Myers, M.H.: Manual for staging of cancer. Am. J. Clin. Oncol. 11(6), 686 (1988)","journal-title":"Am. J. Clin. Oncol."},{"key":"14_CR3","doi-asserted-by":"crossref","unstructured":"Bechhofer, S.: OWL: Web ontology language. In: Encyclopedia of Database Systems, pp. 2008\u20132009. Springer (2009)","DOI":"10.1007\/978-0-387-39940-9_1073"},{"key":"14_CR4","doi-asserted-by":"crossref","unstructured":"Bird, S., Loper, E.: NLTK: the natural language toolkit. In: Proceedings of the ACL 2004 on Interactive Poster and Demonstration Sessions, p. 31. Association for Computational Linguistics (2004)","DOI":"10.3115\/1219044.1219075"},{"issue":"1","key":"14_CR5","doi-asserted-by":"publisher","first-page":"64","DOI":"10.1186\/s13326-016-0106-9","volume":"7","author":"M Boeker","year":"2016","unstructured":"Boeker, M., Fran\u00e7a, F., Bronsert, P., Schulz, S.: TNM-O: ontology support for staging of malignant tumours. J. Biomed. Semant. 7(1), 64 (2016)","journal-title":"J. Biomed. Semant."},{"key":"14_CR6","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1200\/PO.17.00011","volume":"1","author":"D Chakravarty","year":"2017","unstructured":"Chakravarty, D., et al.: OncoKB: a precision oncology knowledge base. JCO Precis. Oncol. 1, 1\u201316 (2017)","journal-title":"JCO Precis. Oncol."},{"issue":"D1","key":"14_CR7","doi-asserted-by":"publisher","first-page":"D204","DOI":"10.1093\/nar\/gku989","volume":"43","author":"Consortium, U.","year":"2014","unstructured":"Consortium, U.: UniProt: a hub for protein information. Nucleic Acids Res. 43(D1), D204\u2013D212 (2014)","journal-title":"Nucleic Acids Res."},{"key":"14_CR8","doi-asserted-by":"crossref","unstructured":"Degtyarenko, K., et al.: ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36(Suppl. 1), D344\u2013D350 (2007)","DOI":"10.1093\/nar\/gkm791"},{"issue":"1","key":"14_CR9","doi-asserted-by":"publisher","first-page":"14","DOI":"10.1186\/2041-1480-5-14","volume":"5","author":"M Dumontier","year":"2014","unstructured":"Dumontier, M., Baker, C.J., Baran, J., Callahan, A., Chepelev, L., Cruz-Toledo, J., Del Rio, N.R., Duck, G., Furlong, L.I., Keath, N.: The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. J. Biomed. Semant. 5(1), 14 (2014)","journal-title":"J. Biomed. Semant."},{"key":"14_CR10","doi-asserted-by":"crossref","unstructured":"Edge, S.B., Compton, C.C.: The American Joint Committee on Cancer: the 7th edition of the AJCC cancer staging manual and the future of TNM. Ann. Surg. Oncol. 17(6), 1471\u20131474 (2010)","DOI":"10.1245\/s10434-010-0985-4"},{"issue":"15","key":"14_CR11","doi-asserted-by":"publisher","first-page":"1803","DOI":"10.1200\/JCO.2013.49.4799","volume":"31","author":"LA Garraway","year":"2013","unstructured":"Garraway, L.A., Verweij, J., Ballman, K.V.: Precision oncology: an overview. J. Clin. Oncol. 31(15), 1803\u20131805 (2013)","journal-title":"J. Clin. Oncol."},{"key":"14_CR12","series-title":"Lecture Notes in Computer Science (Lecture Notes in Artificial Intelligence)","doi-asserted-by":"publisher","first-page":"213","DOI":"10.1007\/11527770_30","volume-title":"Artificial Intelligence in Medicine","author":"A Kumar","year":"2005","unstructured":"Kumar, A., Smith, B.: Oncology ontology in the NCI thesaurus. In: Miksch, S., Hunter, J., Keravnou, E.T. (eds.) AIME 2005. LNCS (LNAI), vol. 3581, pp. 213\u2013220. Springer, Heidelberg (2005). https:\/\/doi.org\/10.1007\/11527770_30"},{"issue":"11","key":"14_CR13","doi-asserted-by":"publisher","first-page":"1081","DOI":"10.1038\/nmeth.2642","volume":"10","author":"A Gonzalez-Perez","year":"2013","unstructured":"Gonzalez-Perez, A., et al.: IntOGen-mutations identifies cancer drivers across tumor types. Nature Methods 10(11), 1081 (2013)","journal-title":"Nature Methods"},{"issue":"2","key":"14_CR14","doi-asserted-by":"publisher","first-page":"170","DOI":"10.1038\/ng.3774","volume":"49","author":"M Griffith","year":"2017","unstructured":"Griffith, M., et al.: CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer. Nat. Genet. 49(2), 170 (2017)","journal-title":"Nat. Genet."},{"issue":"1","key":"14_CR15","doi-asserted-by":"publisher","first-page":"44","DOI":"10.1186\/2041-1480-4-44","volume":"4","author":"J Hanna","year":"2013","unstructured":"Hanna, J., Joseph, E., Brochhausen, M., Hogan, W.R.: Building a drug ontology based on RxNorm and other sources. J. Biomed. Semant. 4(1), 44 (2013)","journal-title":"J. Biomed. Semant."},{"issue":"1","key":"14_CR16","doi-asserted-by":"publisher","first-page":"20","DOI":"10.1634\/theoncologist.12-1-20","volume":"12","author":"MJ Hayat","year":"2007","unstructured":"Hayat, M.J., Howlader, N., Reichman, M.E., Edwards, B.K.: Cancer statistics, trends, and multiple primary cancer analyses from the surveillance, epidemiology, and end results (SEER) program. Oncologist 12(1), 20\u201337 (2007)","journal-title":"Oncologist"},{"key":"14_CR17","unstructured":"Kennedy, B.M., Oren, L.G., Buehring Jr., W.J.: Interactive report generation system and method of operation, uS Patent 5,937,155, 10 August 1999"},{"key":"14_CR18","unstructured":"Kim, H.L., Puymon, M.R., Qin, M., Guru, K., Mohler, J.L.: NCCN clinical practice guidelines in oncology\u2122. J. Natl. Compr. Cancer Netw. (2013)"},{"key":"14_CR19","unstructured":"Klyne, G., Carroll, J.J.: Resource Description Framework (RDF): Concepts and Abstract Syntax. Technical report. World Wide Web Consortium (2006). http:\/\/www.w3.org\/TR\/rdf-concepts\/"},{"issue":"8","key":"14_CR20","doi-asserted-by":"publisher","first-page":"1112","DOI":"10.1093\/bioinformatics\/btq099","volume":"26","author":"J Malone","year":"2010","unstructured":"Malone, J., et al.: Modeling sample variables with an Experimental Factor Ontology. Bioinformatics 26(8), 1112\u20131118 (2010)","journal-title":"Bioinformatics"},{"key":"14_CR21","unstructured":"Massicano, F., et al.: An ontology for TNM clinical stage inference. In: ONTOBRAS (2015)"},{"key":"14_CR22","unstructured":"McCusker, J.P.: Whyis: nano-scale knowledge graph publishing, management, and analysis framework (2018). https:\/\/github.com\/tetherless-world\/whyis\/"},{"issue":"6","key":"14_CR23","doi-asserted-by":"publisher","first-page":"289","DOI":"10.1016\/j.cancergen.2014.06.016","volume":"207","author":"CM Micheel","year":"2014","unstructured":"Micheel, C.M., Lovly, C.M., Levy, M.A.: My cancer genome. Cancer Genet. 207(6), 289 (2014)","journal-title":"Cancer Genet."},{"key":"14_CR24","unstructured":"Mons, B., Velterop, J.: Nano-Publication in the e-science era. In: Workshop on Semantic Web Applications in Scientific Discourse (SWASD 2009), pp. 14\u201315 (2009)"},{"key":"14_CR25","unstructured":"Rashid, S.M., Chastain, K., Stingone, J.A., McGuinness, D.L., McCusker, J.P.: The semantic data dictionary approach to data annotation & integration. In: Proceedings of the First Workshop on Enabling Open Semantic Science (SemSci), pp. 47\u201354 (2017)"},{"issue":"D1","key":"14_CR26","doi-asserted-by":"publisher","first-page":"D940","DOI":"10.1093\/nar\/gkr972","volume":"40","author":"LM Schriml","year":"2011","unstructured":"Schriml, L.M., Arze, C., Nadendla, S., Chang, Y.W.W., Mazaitis, M., Felix, V., Feng, G., Kibbe, W.A.: Disease Ontology: a backbone for disease semantic integration. Nucleic Acids Res. 40(D1), D940\u2013D946 (2011)","journal-title":"Nucleic Acids Res."},{"issue":"12","key":"14_CR27","doi-asserted-by":"publisher","first-page":"2740","DOI":"10.1002\/cncr.11865","volume":"98","author":"SE Singletary","year":"2003","unstructured":"Singletary, S.E., Greene, F.L., Sobin, L.H.: Classification of isolated tumor cells. Cancer 98(12), 2740\u20132741 (2003)","journal-title":"Cancer"},{"key":"14_CR28","unstructured":"Sirin, E., Parsia, B.: SPARQL-DL: SPARQL Query for OWL-DL. In: OWLED, vol. 258 (2007)"},{"key":"14_CR29","doi-asserted-by":"crossref","unstructured":"Wishart, D.S., et al.: DrugBank: a comprehensive resource for in silico drug discovery and exploration. Nucleic Acids Res. 34(Suppl. 1), D668\u2013D672 (2006)","DOI":"10.1093\/nar\/gkj067"}],"container-title":["Lecture Notes in Computer Science","The Semantic Web \u2013 ISWC 2018"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-030-00668-6_14","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,3,13]],"date-time":"2024-03-13T13:27:57Z","timestamp":1710336477000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-030-00668-6_14"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018]]},"ISBN":["9783030006679","9783030006686"],"references-count":29,"URL":"https:\/\/doi.org\/10.1007\/978-3-030-00668-6_14","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"value":"0302-9743","type":"print"},{"value":"1611-3349","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018]]},"assertion":[{"value":"18 September 2018","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"ISWC","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Semantic Web Conference","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Monterey, CA","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"USA","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2018","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"8 October 2018","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"12 October 2018","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"17","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"semweb2018","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"http:\/\/iswc2018.semanticweb.org\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"This content has been made available to all.","name":"free","label":"Free to read"}]}}