{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,25]],"date-time":"2025-03-25T14:44:56Z","timestamp":1742913896907,"version":"3.40.3"},"publisher-location":"Cham","reference-count":31,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783030017217"},{"type":"electronic","value":"9783030017224"}],"license":[{"start":{"date-parts":[[2018,1,1]],"date-time":"2018-01-01T00:00:00Z","timestamp":1514764800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018]]},"DOI":"10.1007\/978-3-030-01722-4_7","type":"book-chapter","created":{"date-parts":[[2018,10,1]],"date-time":"2018-10-01T09:05:22Z","timestamp":1538384722000},"page":"66-77","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["An Argumentation Theory-Based Multiagent Model to Annotate Proteins"],"prefix":"10.1007","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-3157-013X","authenticated-orcid":false,"given":"Daniel S.","family":"Souza","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8660-6331","authenticated-orcid":false,"given":"Waldeyr M. C.","family":"Silva","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2983-2180","authenticated-orcid":false,"given":"C\u00e9lia G.","family":"Ralha","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6822-931X","authenticated-orcid":false,"given":"Maria Em\u00edlia M. T.","family":"Walter","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2018,10,2]]},"reference":[{"issue":"5","key":"7_CR1","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1371\/journal.pcbi.1002514","volume":"8","author":"AM Altenhoff","year":"2012","unstructured":"Altenhoff, A.M., Studer, R.A., Robinson-Rechavi, M., et al.: Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs. PLOS Comput. Biol. 8(5), 1\u201310 (2012)","journal-title":"PLOS Comput. Biol."},{"issue":"3","key":"7_CR2","doi-asserted-by":"publisher","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","volume":"215","author":"SF Altschul","year":"1990","unstructured":"Altschul, S.F., Gish, W., Miller, W., et al.: Basic local alignment search tool. J. Mol. Biol. 215(3), 403\u2013410 (1990)","journal-title":"J. Mol. Biol."},{"issue":"1","key":"7_CR3","doi-asserted-by":"publisher","first-page":"25","DOI":"10.1038\/75556","volume":"25","author":"M Ashburner","year":"2000","unstructured":"Ashburner, M., Ball, C.A., Blake, J.A., et al.: Gene ontology: tool for the unification of biology. Nat. Genet. 25(1), 25\u201329 (2000)","journal-title":"Nat. Genet."},{"issue":"Suppl. 1","key":"7_CR4","first-page":"D154","volume":"33","author":"A Bairoch","year":"2005","unstructured":"Bairoch, A., Apweiler, R., Wu, C.H., et al.: The universal protein resource (uniprot). Nucl. Acids Res. 33(Suppl. 1), D154\u2013D159 (2005)","journal-title":"Nucl. Acids Res."},{"issue":"Suppl. 1","key":"7_CR5","doi-asserted-by":"publisher","first-page":"D396","DOI":"10.1093\/nar\/gkn803","volume":"37","author":"D Barrell","year":"2009","unstructured":"Barrell, D., Dimmer, E., Huntley, R.P., et al.: The goa database in 2009-an integrated gene ontology annotation resource. Nucl. Acids Res. 37(Suppl. 1), D396\u2013D403 (2009)","journal-title":"Nucl. Acids Res."},{"issue":"2","key":"7_CR6","doi-asserted-by":"publisher","first-page":"122","DOI":"10.2174\/18722083113079990006","volume":"7","author":"JS Bernardes","year":"2013","unstructured":"Bernardes, J.S., Pedreira, C.E.: A review of protein function prediction under machine learning perspective. Recent Pat. Biotechnol. 7(2), 122\u2013141 (2013)","journal-title":"Recent Pat. Biotechnol."},{"issue":"4","key":"7_CR7","doi-asserted-by":"publisher","first-page":"707","DOI":"10.1006\/jmbi.1998.2144","volume":"283","author":"P Bork","year":"1998","unstructured":"Bork, P., Dandekar, T., Diaz-Lazcoz, Y., et al.: Predicting function: from genes to genomes and back. J. Mol. Biol. 283(4), 707\u2013725 (1998)","journal-title":"J. Mol. Biol."},{"key":"7_CR8","volume-title":"Intentions, Plans, and Practical Reasoning","author":"ME Bratman","year":"1987","unstructured":"Bratman, M.E.: Intentions, Plans, and Practical Reasoning. Harvard University Press, Cambridge (1987)"},{"issue":"5\u20136","key":"7_CR9","doi-asserted-by":"publisher","first-page":"286","DOI":"10.1016\/j.artint.2007.02.003","volume":"171","author":"M Caminada","year":"2007","unstructured":"Caminada, M., Amgoud, L.: On the evaluation of argumentation formalisms. Artif. Intell. 171(5\u20136), 286\u2013310 (2007)","journal-title":"Artif. Intell."},{"key":"7_CR10","doi-asserted-by":"publisher","first-page":"28","DOI":"10.1016\/j.artint.2014.11.008","volume":"220","author":"G Charwat","year":"2015","unstructured":"Charwat, G., Dvo\u0159\u00e1k, W., Gaggl, S.A., et al.: Methods for solving reasoning problems in abstract argumentation a survey. Artif. Intell. 220, 28\u201363 (2015)","journal-title":"Artif. Intell."},{"issue":"9","key":"7_CR11","doi-asserted-by":"publisher","first-page":"755","DOI":"10.1093\/bioinformatics\/14.9.755","volume":"14","author":"SR Eddy","year":"1998","unstructured":"Eddy, S.R.: Profile hidden Markov models. Bioinformatics 14(9), 755\u2013763 (1998)","journal-title":"Bioinformatics"},{"key":"7_CR12","series-title":"Handbook of Historical Backgrounds and Contemporary developments","volume-title":"Fundamentals of Argumentation Theory","author":"FH Eemeren van","year":"1996","unstructured":"van Eemeren, F.H., Grootendorst, R., Henkemans, A.F.S., et al.: Fundamentals of Argumentation Theory. Handbook of Historical Backgrounds and Contemporary developments, 1st edn. Lawrence Erlbaum Associates, New Jersey (1996)","edition":"1"},{"issue":"Database issue","key":"7_CR13","doi-asserted-by":"publisher","first-page":"D222","DOI":"10.1093\/nar\/gkt1223","volume":"42","author":"RD Finn","year":"2014","unstructured":"Finn, R.D., Bateman, A., Clements, J., et al.: Pfam: the protein families database. Nucl. Acids Res. 42(Database issue), D222\u2013D230 (2014)","journal-title":"Nucl. Acids Res."},{"issue":"Suppl. 1","key":"7_CR14","doi-asserted-by":"publisher","first-page":"D247","DOI":"10.1093\/nar\/gkj149","volume":"34","author":"RD Finn","year":"2006","unstructured":"Finn, R.D., Mistry, J., Schuster-B\u00f6ckler, B.: Pfam: clans, web tools and services. Nucl. Acids Res. 34(Suppl. 1), D247 (2006)","journal-title":"Nucl. Acids Res."},{"issue":"1","key":"7_CR15","doi-asserted-by":"publisher","first-page":"326","DOI":"10.1186\/1471-2105-12-326","volume":"12","author":"K Forslund","year":"2011","unstructured":"Forslund, K., Pekkari, I., Sonnhammer, E.L.: Domain architecture conservation in orthologs. BMC Bioinf. 12(1), 326 (2011)","journal-title":"BMC Bioinf."},{"issue":"D1","key":"7_CR16","doi-asserted-by":"publisher","first-page":"D865","DOI":"10.1093\/nar\/gkw1039","volume":"45","author":"S Khler","year":"2017","unstructured":"Khler, S., Vasilevsky, N.A., Engelstad, M., et al.: The human phenotype ontology in 2017. Nucl. Acids Res. 45(D1), D865 (2017)","journal-title":"Nucl. Acids Res."},{"key":"7_CR17","unstructured":"Kok, E.M.: Exploring the practical benefits of argumentation in multi-agent deliberation. Ph.D. thesis, Utrecht University (2013)"},{"key":"7_CR18","series-title":"Lecture Notes in Computer Science (Lecture Notes in Artificial Intelligence)","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1007\/978-3-540-75526-5_1","volume-title":"Argumentation in Multi-Agent Systems","author":"N Maudet","year":"2007","unstructured":"Maudet, N., Parsons, S., Rahwan, I.: Argumentation in multi-agent systems: context and recent developments. In: Maudet, N., Parsons, S., Rahwan, I. (eds.) ArgMAS 2006. LNCS (LNAI), vol. 4766, pp. 1\u201316. Springer, Heidelberg (2007). https:\/\/doi.org\/10.1007\/978-3-540-75526-5_1"},{"issue":"1","key":"7_CR19","doi-asserted-by":"publisher","first-page":"31","DOI":"10.1145\/375360.375365","volume":"33","author":"G Navarro","year":"2001","unstructured":"Navarro, G.: A guided tour to approximate string matching. ACM Comput. Surv. 33(1), 31\u201388 (2001)","journal-title":"ACM Comput. Surv."},{"issue":"1","key":"7_CR20","first-page":"1","volume":"1","author":"E Oishi","year":"2006","unstructured":"Oishi, E.: Austins speech act theory and the speech situation. Esercizi Filosofici 1(1), 1\u201314 (2006)","journal-title":"Esercizi Filosofici"},{"key":"7_CR21","unstructured":"Pandey, G., Kumar, V., Steinbach, M.: Computational approaches for protein function prediction: a survey. Technical report, Department of Computer Science and Engineering, University of Minnesota, Twin Cities (2006)"},{"key":"7_CR22","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1002\/0471250953.bi0412s51","volume":"51","author":"WR Pearson","year":"2015","unstructured":"Pearson, W.R.: Protein function prediction: problems and pitfalls. Curr. Protoc. Bioinf. 51, 4\u201312 (2015)","journal-title":"Curr. Protoc. Bioinf."},{"issue":"2","key":"7_CR23","doi-asserted-by":"publisher","first-page":"93","DOI":"10.1080\/19462160903564592","volume":"1","author":"H Prakken","year":"2010","unstructured":"Prakken, H.: An abstract framework for argumentation with structured arguments. Argum. Comput. 1(2), 93\u2013124 (2010)","journal-title":"Argum. Comput."},{"key":"7_CR24","unstructured":"Rao, A.S., George, M.P.: BDI agents: From theory to practice. In: First International Conference on Multi-Agent Systems (ICMAS-95) (1995)"},{"key":"7_CR25","doi-asserted-by":"publisher","first-page":"225","DOI":"10.1007\/978-3-319-41279-5_7","volume-title":"Big Data Analytics in Genomics","author":"A Shehu","year":"2016","unstructured":"Shehu, A., Barbar\u00e1, D., Molloy, K.: A survey of computational methods for protein function prediction. In: Wong, K.C. (ed.) Big Data Analytics in Genomics, pp. 225\u2013298. Springer, Cham (2016). https:\/\/doi.org\/10.1007\/978-3-319-41279-5_7"},{"issue":"15","key":"7_CR26","doi-asserted-by":"publisher","first-page":"1934","DOI":"10.1093\/bioinformatics\/btg277","volume":"19","author":"J Shrager","year":"2003","unstructured":"Shrager, J.: The fiction of function. Bioinformatics 19(15), 1934\u20131936 (2003)","journal-title":"Bioinformatics"},{"key":"7_CR27","series-title":"Prentice Hall Series in Artificial Intelligence","volume-title":"Artificial intelligence: a modern approach","author":"PN Stuart Russell","year":"2010","unstructured":"Stuart Russell, P.N.: Artificial intelligence: a modern approach. Prentice Hall Series in Artificial Intelligence, 3rd edn. Prentice Hall, Upper Saddle River (2010)","edition":"3"},{"key":"7_CR28","doi-asserted-by":"publisher","first-page":"1","DOI":"10.1155\/2014\/845479","volume":"2014","author":"Arvind Kumar Tiwari","year":"2014","unstructured":"Tiwari, A.K., Srivastava, R.: A survey of computational intelligence techniques in protein function prediction. Int. J. Proteomics 2014, 22 p. (2014). https:\/\/doi.org\/10.1155\/2014\/845479","journal-title":"International Journal of Proteomics"},{"key":"7_CR29","unstructured":"Webb, E.C.: Enzyme nomenclature. Recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the Nomenclature and Classification of Enzymes. Elsevier Inc., Academic Press, Cambridge (1992)"},{"key":"7_CR30","volume-title":"Multiagent Systems: A Modern Approach to Distributed Modern Approach to Artificial Intelligence","author":"G Weiss","year":"1999","unstructured":"Weiss, G.: Multiagent Systems: A Modern Approach to Distributed Modern Approach to Artificial Intelligence, 1st edn. The MIT Press, Cambridge (1999)","edition":"1"},{"key":"7_CR31","doi-asserted-by":"publisher","first-page":"115","DOI":"10.1017\/S0269888900008122","volume":"10","author":"M Wooldridge","year":"1995","unstructured":"Wooldridge, M., Jennings, N.R.: Intelligent agents: theory and practice. Knowl. Eng. Rev. 10, 115\u2013152 (1995)","journal-title":"Knowl. Eng. Rev."}],"container-title":["Lecture Notes in Computer Science","Advances in Bioinformatics and Computational Biology"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-030-01722-4_7","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,11,11]],"date-time":"2020-11-11T17:28:35Z","timestamp":1605115715000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-030-01722-4_7"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018]]},"ISBN":["9783030017217","9783030017224"],"references-count":31,"URL":"https:\/\/doi.org\/10.1007\/978-3-030-01722-4_7","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2018]]},"assertion":[{"value":"BSB","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Brazilian Symposium on Bioinformatics","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Niter\u00f3i","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Brazil","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2018","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"30 October 2018","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"1 November 2018","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"11","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"wob2018","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"http:\/\/bsb2018.ic.uff.br\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}