{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,4]],"date-time":"2026-04-04T05:56:00Z","timestamp":1775282160816,"version":"3.50.1"},"publisher-location":"Cham","reference-count":39,"publisher":"Springer International Publishing","isbn-type":[{"value":"9783030022839","type":"print"},{"value":"9783030022846","type":"electronic"}],"license":[{"start":{"date-parts":[[2018,1,1]],"date-time":"2018-01-01T00:00:00Z","timestamp":1514764800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2018]]},"DOI":"10.1007\/978-3-030-02284-6_8","type":"book-chapter","created":{"date-parts":[[2018,11,22]],"date-time":"2018-11-22T11:19:15Z","timestamp":1542885555000},"page":"99-114","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":0,"title":["Extracting Information from Molecular Pathway Diagrams"],"prefix":"10.1007","author":[{"given":"Antonio","family":"Foncubierta-Rodr\u00edguez","sequence":"first","affiliation":[]},{"given":"Anca-Nicoleta","family":"Ciubotaru","sequence":"additional","affiliation":[]},{"given":"Costas","family":"Bekas","sequence":"additional","affiliation":[]},{"given":"Maria","family":"Gabrani","sequence":"additional","affiliation":[]}],"member":"297","published-online":{"date-parts":[[2018,11,23]]},"reference":[{"key":"8_CR1","unstructured":"Brocke, J.V., et al.: Reconstructing the giant: On the importance of rigour in documenting the literature search process. In: ECIS Proceedings (2009)"},{"key":"8_CR2","doi-asserted-by":"crossref","unstructured":"M\u00fcller, H., Foncubierta-Rodr\u00edguez, A., Lin, C., Eggel, I.: Determining the importance of figures in journal articles to find representative images. In: SPIE Proceedings, vol. 8674 (2013)","DOI":"10.1117\/12.2007843"},{"issue":"D1","key":"8_CR3","doi-asserted-by":"publisher","first-page":"D481","DOI":"10.1093\/nar\/gkv1351","volume":"44","author":"Antonio Fabregat","year":"2015","unstructured":"Fabregat, A., et al.: The reactome pathway knowledgebase. Nucleic Acids Res. 44(D1), D481\u2013D487 (2016)","journal-title":"Nucleic Acids Research"},{"key":"8_CR4","doi-asserted-by":"crossref","unstructured":"Petri, V., et al.: The pathway ontology - updates and applications. J. Biomed. Semant. 5(1), 7 (2014)","DOI":"10.1186\/2041-1480-5-7"},{"issue":"Database","key":"8_CR5","doi-asserted-by":"publisher","first-page":"D1067","DOI":"10.1093\/nar\/gkq813","volume":"39","author":"A. P. Davis","year":"2010","unstructured":"Davis, A.P., et al.: The comparative toxicogenomics database: update 2011. Nucleic Acids Res. 39(Database issue), D1067\u2013D1072 (2011)","journal-title":"Nucleic Acids Research"},{"issue":"1","key":"8_CR6","doi-asserted-by":"publisher","first-page":"4","DOI":"10.1186\/1479-7364-7-4","volume":"7","author":"G Thomas Hayman","year":"2013","unstructured":"Hayman, G.T., et al.: The updated RGD pathway portal utilizes increased curation efficiency and provides expanded pathway information. Hum. Genomics 7, 4 (2013)","journal-title":"Human Genomics"},{"key":"8_CR7","doi-asserted-by":"publisher","first-page":"243","DOI":"10.1186\/1471-2105-13-243","volume":"13","author":"SM Paley","year":"2012","unstructured":"Paley, S.M., Latendresse, M., Karp, P.D.: Regulatory network operations in the pathway tools software. BMC Bioinformatics 13, 243 (2012)","journal-title":"BMC Bioinformatics"},{"key":"8_CR8","doi-asserted-by":"crossref","unstructured":"Ravikumar, K.E., Wagholikar, K.B., Liu, H.: Challenges in adapting text mining for full text articles to assist pathway curation. In: Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2014, pp. 551\u2013558. ACM, New York (2014)","DOI":"10.1145\/2649387.2649444"},{"issue":"4","key":"8_CR9","doi-asserted-by":"publisher","first-page":"753","DOI":"10.1109\/TCBB.2014.2318730","volume":"11","author":"B Garc\u00eda-Jim\u00e9nez","year":"2014","unstructured":"Garc\u00eda-Jim\u00e9nez, B., Pons, T., Sanchis, A., Valencia, A.: Predicting protein relationships to human pathways through a relational learning approach based on simple sequence features. IEEE\/ACM Trans. Comput. Biol. Bioinform. 11(4), 753\u2013765 (2014)","journal-title":"IEEE\/ACM Trans. Comput. Biol. Bioinform."},{"key":"8_CR10","doi-asserted-by":"crossref","unstructured":"Yoon, S., et al.: Systematic identification of context-dependent conflicting information in biological pathways. In: Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, DTMBIO 2014, p. 9. ACM, New York (2014)","DOI":"10.1145\/2665970.2665973"},{"issue":"15","key":"8_CR11","doi-asserted-by":"publisher","first-page":"2165","DOI":"10.1093\/bioinformatics\/btr336","volume":"27","author":"A Luna","year":"2011","unstructured":"Luna, A., Sunshine, M.L., van Iersel, M.P., Aladjem, M.I., Kohn, K.W.: PathVisio-MIM: Pathvisio plugin for creating and editing molecular interaction maps (MIMs). Bioinformatics 27(15), 2165\u20132166 (2011)","journal-title":"Bioinformatics"},{"issue":"suppl_2","key":"8_CR12","doi-asserted-by":"publisher","first-page":"W124","DOI":"10.1093\/nar\/gkq499","volume":"38","author":"Y.-T. Wang","year":"2010","unstructured":"Wang, Y.T., Huang, Y.H., Chen, Y.C., Hsu, C.L., Yang, U.C.: PINT: pathways integration tool. Nucleic Acids Res. 38(Web Server issue), W124\u2013W131 (2010)","journal-title":"Nucleic Acids Research"},{"key":"8_CR13","unstructured":"Le Novere, N., et al.: The systems biology graphical notation, 27(8) 735\u2013741"},{"key":"8_CR14","unstructured":"Hucka, M., et al.: The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models, 19(4), 524\u2013531"},{"key":"8_CR15","unstructured":"Garcia Seco de Herrera, A., Kalpathy-Cramer, J., Demner-Fushman, D., Antani, S., M\u00fcller, H.: Overview of the ImageCLEF 2013 medical tasks. In: CLEF (Working Notes) (2013)"},{"key":"8_CR16","doi-asserted-by":"crossref","unstructured":"M\u00fcller, H., Kalpathy-Cramer, J., Demner-Fushman, D., Antani, S.: Creating a classification of image types in the medical literature for visual categorization. In: Proceedings SPIE 8319, Medical Imaging 2012: Advanced PACS-based Imaging Informatics and Therapeutic Applications, vol. 8319, pp. 83190P\u201383190P-12 (2012)","DOI":"10.1117\/12.911186"},{"key":"8_CR17","doi-asserted-by":"crossref","unstructured":"Foncubierta-Rodr\u00edguez, A., Garc\u00eda Seco de Herrerea, A. M\u00fcller, H.: Medical image retrieval using bag of meaningful visual words: unsupervised visual vocabulary pruning with PLSA. In: Proceedings of the 1st ACM International Workshop on Multimedia Indexing and Information Retrieval for Healthcare, MIIRH 2013, pp. 75\u201382. ACM (2013)","DOI":"10.1145\/2505323.2505336"},{"key":"8_CR18","doi-asserted-by":"crossref","unstructured":"Puddu, A., Mach, F., Nencioni, A., Viviani, G.L., Montecucco, F.: An Emerging Role of Glucagon-Like Peptide-1 in Preventing Advanced-Glycation-End-Product-Mediated Damages in Diabetes. Mediators of Inflammation 2013 (2013)","DOI":"10.1155\/2013\/591056"},{"key":"8_CR19","doi-asserted-by":"publisher","first-page":"12","DOI":"10.1186\/1747-1028-5-12","volume":"5","author":"GH Enders","year":"2010","unstructured":"Enders, G.H.: Gauchos and ochos: a Wee1-Cdk tango regulating mitotic entry. Cell Div. 5, 12 (2010)","journal-title":"Cell Div."},{"issue":"6","key":"8_CR20","doi-asserted-by":"publisher","first-page":"1959","DOI":"10.3892\/or.2012.2057","volume":"28","author":"HL Kim","year":"2012","unstructured":"Kim, H.L., Seo, Y.R.: Molecular and genomic approach for understanding the gene-environment interaction between Nrf2 deficiency and carcinogenic nickel-induced DNA damage. Oncol. Rep. 28(6), 1959\u20131967 (2012)","journal-title":"Oncol. Rep."},{"key":"8_CR21","doi-asserted-by":"crossref","unstructured":"Futrelle, R.P.: Strategies for diagram understanding: generalized equivalence, spatial\/object pyramids and animate vision. In: Proceedings of the Conference on 10th International Pattern Recognition, vol. 1, pp. 403\u2013408 (1990)","DOI":"10.1109\/ICPR.1990.118136"},{"issue":"7","key":"8_CR22","doi-asserted-by":"publisher","first-page":"75","DOI":"10.1109\/2.144445","volume":"25","author":"RP Futrelle","year":"1992","unstructured":"Futrelle, R.P., Kakadiaris, I.A., Alexander, J., Carriero, C.M., Nikolakis, N., Futrelle, J.M.: Understanding diagrams in technical documents. Computer 25(7), 75\u201378 (1992)","journal-title":"Computer"},{"key":"8_CR23","doi-asserted-by":"crossref","unstructured":"Lank, E., Thorley, J., Chen, S., Blostein, D.: On-line recognition of UML diagrams. In: Proceedings of Sixth International Conference on Document Analysis and Recognition, Institute of Electrical & Electronics Engineers (IEEE) (2001)","DOI":"10.1109\/ICDAR.2001.953813"},{"key":"8_CR24","doi-asserted-by":"crossref","unstructured":"Zheng, W.T., Sun, Z.X.: Knowledge-based hierarchical sketch understanding. In: Proceedings of International Conference Machine Learning and Cybernetics, vol. 5, pp. 2838\u20132843, August 2005","DOI":"10.1109\/ICMLC.2005.1527426"},{"key":"8_CR25","doi-asserted-by":"crossref","unstructured":"Hammond, T., Davis, R.: Tahuti: a geometrical sketch recognition system for UML class diagrams. In: ACM SIGGRAPH 2006 Courses, SIGGRAPH 2006. ACM, New York (2006)","DOI":"10.1145\/1185657.1185786"},{"key":"8_CR26","unstructured":"Thean, A., Deltorn, J.M., Lopez, P., Romary, L.: Textual summarisation of flowcharts in patent drawings for CLEF-IP 2012. In: CLEF 2012 (2012)"},{"key":"8_CR27","doi-asserted-by":"crossref","unstructured":"Lupu, M., Piroi, F., Hanbury, A.: Evaluating flowchart recognition for patent retrieval. In: EVIA@ NTCIR (2013)","DOI":"10.1561\/1500000027"},{"issue":"5-6","key":"8_CR28","doi-asserted-by":"publisher","first-page":"545","DOI":"10.1007\/s10791-013-9234-3","volume":"17","author":"Mar\u00e7al Rusi\u00f1ol","year":"2013","unstructured":"Rusi\u00f1ol, M., de las Heras, L.P., Terrades, O.R.: Flowchart recognition for non-textual information retrieval in patent search. Inf. Retrieval 17(5-6), 545\u2013562 (2014)","journal-title":"Information Retrieval"},{"key":"8_CR29","doi-asserted-by":"crossref","unstructured":"Forbus, K.D., Usher, J., Chapman, V.: Sketching for military courses of action diagrams. In: Proceedings of the 8th International Conference on Intelligent User Interfaces, IUI 2003, pp. 61\u201368. ACM, New York (2003)","DOI":"10.1145\/604045.604059"},{"key":"8_CR30","doi-asserted-by":"crossref","unstructured":"Mas, J., Sanchez, G., Llados, J., Lamiroy, B.: An incremental on-line parsing algorithm for recognizing sketching diagrams. In: Ninth International Conference on Document Analysis and Recognition (ICDAR 2007), Institute of Electrical & Electronics Engineers (IEEE), September 2007","DOI":"10.1109\/ICDAR.2007.4378750"},{"issue":"12","key":"8_CR31","doi-asserted-by":"publisher","first-page":"3215","DOI":"10.1016\/j.patcog.2009.01.031","volume":"42","author":"Guihuan Feng","year":"2009","unstructured":"Feng, G., Viard-Gaudin, C., Sun, Z.: On-line hand-drawn electric circuit diagram recognition using 2D dynamic programming. Pattern Recogn. 42(12), 3215\u20133223 (2009)","journal-title":"Pattern Recognition"},{"key":"8_CR32","doi-asserted-by":"crossref","unstructured":"Nakamura, Y., Furukawa, R., Nagao, M.: Diagram understanding utilizing natural language text. In: Proceedings of Second International Document Analysis and Recognition Conference, pp. 614\u2013618, October 1993","DOI":"10.1109\/ICDAR.1993.395661"},{"key":"8_CR33","doi-asserted-by":"crossref","unstructured":"Butler, G., Grogono, P., Shinghal, R., Tjandra, I.: Retrieving information from data flow diagrams. In: Proceedings of 2nd Working Conference Reverse Engineering, pp. 22\u201329, July 1995","DOI":"10.1109\/WCRE.1995.514690"},{"key":"8_CR34","doi-asserted-by":"crossref","unstructured":"Watanabe, Y., Nagao, M.: Diagram understanding using integration of layout information and textual information. In: Proceedings of the 17th International Conference on Computational Linguistics, COLING 1998, vol. 2, pp. 1374\u20131380. Association for Computational Linguistics, Stroudsburg (1998)","DOI":"10.3115\/980432.980793"},{"key":"8_CR35","unstructured":"M\u00f6rzinger, R., Schuster, R., Horti, A., Thallinger, G.: Visual structure analysis of flow charts in patent images. In: CLEF (Online Working Notes\/Labs\/Workshop) (2012)"},{"key":"8_CR36","unstructured":"Rusi\u00f1ol, M., et al.: CVC-UAB\u2019s participation in the flowchart recognition task of CLEF-IP 2012. In: CLEF (Online Working Notes\/Labs\/Workshop) (2012)"},{"key":"8_CR37","doi-asserted-by":"crossref","unstructured":"Smith, R.: An overview of the Tesseract OCR engine. In: Proceedings of the Ninth International Conference on Document Analysis and Recognition, ICDAR 2007, vol. 02, pp. 629\u2013633. IEEE Computer Society, Washington, DC (2007)","DOI":"10.1109\/ICDAR.2007.4376991"},{"key":"8_CR38","doi-asserted-by":"crossref","unstructured":"Harris, C., Stephens, M.: A combined corner and edge detector. In: Alvey Vision Conference, vol. 15, p. 50. Citeseer (1988)","DOI":"10.5244\/C.2.23"},{"issue":"11","key":"8_CR39","doi-asserted-by":"publisher","first-page":"8474","DOI":"10.18632\/oncotarget.3523","volume":"6","author":"Z Su","year":"2015","unstructured":"Su, Z., Yang, Z., Xu, Y., Chen, Y., Yu, Q.: MicroRNAs in apoptosis, autophagy and necroptosis. Oncotarget 6(11), 8474\u20138490 (2015)","journal-title":"Oncotarget"}],"container-title":["Lecture Notes in Computer Science","Graphics Recognition. Current Trends and Evolutions"],"original-title":[],"link":[{"URL":"http:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-030-02284-6_8","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2026,4,4]],"date-time":"2026-04-04T05:08:26Z","timestamp":1775279306000},"score":1,"resource":{"primary":{"URL":"http:\/\/link.springer.com\/10.1007\/978-3-030-02284-6_8"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018]]},"ISBN":["9783030022839","9783030022846"],"references-count":39,"URL":"https:\/\/doi.org\/10.1007\/978-3-030-02284-6_8","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"value":"0302-9743","type":"print"},{"value":"1611-3349","type":"electronic"}],"subject":[],"published":{"date-parts":[[2018]]},"assertion":[{"value":"GREC","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Workshop on Graphics Recognition","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Kyoto","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Japan","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2017","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"9 November 2017","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"10 November 2017","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"12","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"grec2017","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"https:\/\/grec2017.loria.fr\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}