{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,28]],"date-time":"2025-03-28T00:09:43Z","timestamp":1743120583977,"version":"3.40.3"},"publisher-location":"Cham","reference-count":17,"publisher":"Springer International Publishing","isbn-type":[{"type":"print","value":"9783030179342"},{"type":"electronic","value":"9783030179359"}],"license":[{"start":{"date-parts":[[2019,1,1]],"date-time":"2019-01-01T00:00:00Z","timestamp":1546300800000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/www.springer.com\/tdm"}],"content-domain":{"domain":["link.springer.com"],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2019]]},"DOI":"10.1007\/978-3-030-17935-9_15","type":"book-chapter","created":{"date-parts":[[2019,4,30]],"date-time":"2019-04-30T12:49:05Z","timestamp":1556628545000},"page":"155-164","update-policy":"https:\/\/doi.org\/10.1007\/springer_crossmark_policy","source":"Crossref","is-referenced-by-count":4,"title":["Associating Protein Domains with Biological Functions: A Tripartite Network Approach"],"prefix":"10.1007","author":[{"given":"Elena","family":"Rojano","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"James Richard","family":"Perkins","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ian","family":"Sillitoe","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Christine","family":"Orengo","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Juan Antonio","family":"Garc\u00eda Ranea","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Pedro","family":"Seoane","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"297","published-online":{"date-parts":[[2019,4,13]]},"reference":[{"issue":"1","key":"15_CR1","doi-asserted-by":"publisher","first-page":"45","DOI":"10.1146\/annurev.biophys.31.082901.134314","volume":"31","author":"CP Ponting","year":"2002","unstructured":"Ponting, C.P., Russell, R.R.: The natural history of protein domains. Ann. Rev. Biophys. Biomol. Struct. 31(1), 45\u201371 (2002)","journal-title":"Ann. Rev. Biophys. Biomol. Struct."},{"issue":"10","key":"15_CR2","doi-asserted-by":"publisher","first-page":"1148","DOI":"10.1107\/S1744309110001685","volume":"66","author":"A Bateman","year":"2010","unstructured":"Bateman, A., Coggill, P., Finn, R.D.: DUFs: families in search of function. Acta Crystallogr. Section F: Struct. Biol. Crystallization Commun. 66(10), 1148\u20131152 (2010)","journal-title":"Acta Crystallogr. Section F: Struct. Biol. Crystallization Commun."},{"key":"15_CR3","first-page":"137","volume-title":"Methods in Molecular Biology","author":"Natalie Dawson","year":"2016","unstructured":"Dawson, N., Sillitoe, I., Marsden, R.L., Orengo, C.A.: The classification of protein domains. In: Methods in Molecular Biology, pp. 137\u2013164 (2017)"},{"issue":"D1","key":"15_CR4","doi-asserted-by":"publisher","first-page":"D376","DOI":"10.1093\/nar\/gku947","volume":"43","author":"Ian Sillitoe","year":"2014","unstructured":"Sillitoe, I., et al.: CATH: comprehensive structural and functional annotations for genome sequences. Nucleic Acids Res. 43(Database issue), D376\u2013D381 (2015)","journal-title":"Nucleic Acids Research"},{"issue":"D1","key":"15_CR5","first-page":"D271","volume":"45","author":"PW Rose","year":"2017","unstructured":"Rose, P.W., et al.: The RCSB protein data bank: integrative view of protein, gene and 3D structural information. Nucleic Acids Res. 45(D1), D271\u2013D281 (2017)","journal-title":"Nucleic Acids Res."},{"issue":"D1","key":"15_CR6","doi-asserted-by":"publisher","first-page":"D289","DOI":"10.1093\/nar\/gkw1098","volume":"45","author":"NL Dawson","year":"2017","unstructured":"Dawson, N.L., et al.: CATH: an expanded resource to predict protein function through structure and sequence. Nucleic Acids Res. 45(D1), D289\u2013D295 (2017)","journal-title":"Nucleic Acids Res."},{"issue":"D1","key":"15_CR7","doi-asserted-by":"publisher","first-page":"D435","DOI":"10.1093\/nar\/gkx1069","volume":"46","author":"TE Lewis","year":"2018","unstructured":"Lewis, T.E., et al.: Gene3D: extensive prediction of globular domains in proteins. Nucleic Acids Res. 46(D1), D435\u2013D439 (2018)","journal-title":"Nucleic Acids Res."},{"issue":"Suppl. 3","key":"15_CR8","first-page":"1","volume":"14","author":"R Rentzsch","year":"2013","unstructured":"Rentzsch, R., Orengo, C.A.: Protein function prediction using domain families. BMC Bioinform. 14(Suppl. 3), 1\u201314 (2013)","journal-title":"BMC Bioinform."},{"key":"15_CR9","doi-asserted-by":"crossref","unstructured":"Carbon, S., et al.: Expansion of the gene ontology knowledgebase and resources: the gene ontology consortium. Nucleic Acids Res. 45(Database issue), D331\u2013D338 (2017)","DOI":"10.1093\/nar\/gkw1108"},{"key":"15_CR10","doi-asserted-by":"crossref","unstructured":"Ogata, H., Goto, S., Sato, K., Fujibuchi, W., Bono, H., Kanehisa, M.: KEGG: Kyoto encyclopedia of genes and genomes. 27(1), 29\u201334 (1999)","DOI":"10.1093\/nar\/27.1.29"},{"issue":"D1","key":"15_CR11","doi-asserted-by":"publisher","first-page":"D481","DOI":"10.1093\/nar\/gkv1351","volume":"44","author":"Antonio Fabregat","year":"2015","unstructured":"Fabregat, A., et al.: The Reactome pathway knowledgebase. Nucleic Acids Res. 44(Database issue), D481\u2013D487 (2018)","journal-title":"Nucleic Acids Research"},{"issue":"D1","key":"15_CR12","doi-asserted-by":"publisher","first-page":"D761","DOI":"10.1093\/nar\/gkr1023","volume":"40","author":"Anne Morgat","year":"2011","unstructured":"Morgat, A., et al.: UniPathway: a resource for the exploration and annotation of metabolic pathways. Nucleic Acids Res. 40(Database issue), D761\u2013D769 (2012)","journal-title":"Nucleic Acids Research"},{"key":"15_CR13","series-title":"Lecture Notes in Computer Science","doi-asserted-by":"publisher","first-page":"197","DOI":"10.1007\/978-3-319-56148-6_17","volume-title":"Bioinformatics and Biomedical Engineering","author":"E Rojano","year":"2017","unstructured":"Rojano, E., Seoane, P., Bueno-Amoros, A., Perkins, J.R., Garcia-Ranea, J.A.: Revealing the relationship between human genome regions and pathological phenotypes through network analysis. In: Rojas, I., Ortu\u00f1o, F. (eds.) IWBBIO 2017. LNCS, vol. 10208, pp. 197\u2013207. Springer, Cham (2017). https:\/\/doi.org\/10.1007\/978-3-319-56148-6_17"},{"issue":"21","key":"15_CR14","doi-asserted-by":"publisher","first-page":"3460","DOI":"10.1093\/bioinformatics\/btv398","volume":"31","author":"S Das","year":"2015","unstructured":"Das, S., Lee, D., Sillitoe, I., Dawson, N.L., Lees, J.G., Orengo, C.A.: Functional classification of CATH superfamilies: a domain-based approach for protein function annotation. Bioinformatics 31(21), 3460\u20133467 (2015)","journal-title":"Bioinformatics"},{"issue":"3","key":"15_CR15","doi-asserted-by":"publisher","first-page":"598","DOI":"10.1002\/prot.22373","volume":"76","author":"D Lopez","year":"2009","unstructured":"Lopez, D., Pazos, F.: Gene ontology functional annotations at the structural domain level. Proteins: Struct. Funct. Bioinform. 76(3), 598\u2013607 (2009)","journal-title":"Proteins: Struct. Funct. Bioinform."},{"issue":"12","key":"15_CR16","doi-asserted-by":"publisher","first-page":"1169","DOI":"10.1038\/nmeth.2728","volume":"10","author":"JI Bass","year":"2013","unstructured":"Bass, J.I., Diallo, A., Nelson, J., Soto, J.M., Myers, C.L., Walhout, A.J.: Using networks to measure similarity between genes: association index selection. Nat. Methods 10(12), 1169\u20131176 (2013)","journal-title":"Nat. Methods"},{"key":"15_CR17","doi-asserted-by":"publisher","first-page":"17071","DOI":"10.1038\/cddiscovery.2017.71","volume":"3","author":"M Cassandri","year":"2017","unstructured":"Cassandri, M., et al.: Zinc-finger proteins in health and disease. Cell Death Discov. 3, 17071 (2017)","journal-title":"Cell Death Discov."}],"container-title":["Lecture Notes in Computer Science","Bioinformatics and Biomedical Engineering"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/link.springer.com\/content\/pdf\/10.1007\/978-3-030-17935-9_15","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,3,13]],"date-time":"2024-03-13T13:09:48Z","timestamp":1710335388000},"score":1,"resource":{"primary":{"URL":"https:\/\/link.springer.com\/10.1007\/978-3-030-17935-9_15"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019]]},"ISBN":["9783030179342","9783030179359"],"references-count":17,"URL":"https:\/\/doi.org\/10.1007\/978-3-030-17935-9_15","relation":{},"ISSN":["0302-9743","1611-3349"],"issn-type":[{"type":"print","value":"0302-9743"},{"type":"electronic","value":"1611-3349"}],"subject":[],"published":{"date-parts":[[2019]]},"assertion":[{"value":"13 April 2019","order":1,"name":"first_online","label":"First Online","group":{"name":"ChapterHistory","label":"Chapter History"}},{"value":"IWBBIO","order":1,"name":"conference_acronym","label":"Conference Acronym","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"International Work-Conference on Bioinformatics and Biomedical Engineering","order":2,"name":"conference_name","label":"Conference Name","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Granada","order":3,"name":"conference_city","label":"Conference City","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"Spain","order":4,"name":"conference_country","label":"Conference Country","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"2019","order":5,"name":"conference_year","label":"Conference Year","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"8 May 2019","order":7,"name":"conference_start_date","label":"Conference Start Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"10 May 2019","order":8,"name":"conference_end_date","label":"Conference End Date","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"7","order":9,"name":"conference_number","label":"Conference Number","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"iwbbio2019","order":10,"name":"conference_id","label":"Conference ID","group":{"name":"ConferenceInfo","label":"Conference Information"}},{"value":"http:\/\/iwbbio.ugr.es\/","order":11,"name":"conference_url","label":"Conference URL","group":{"name":"ConferenceInfo","label":"Conference Information"}}]}}